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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
231
Samples
Sample
Description
TPM
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.2
211
Tumor
1.0
283
Tumor
1.0
131
Tumor
0.9
1031
Tumor
0.9
943
Tumor
0.8
427
Tumor
0.8
727
Tumor
0.7
385
Tumor
0.7
647
Tumor
0.7
965
Tumor
0.6
1046
Normal
0.6
525
Tumor
0.6
471
Tumor
0.6
224
Normal
0.6
161
Tumor
0.6
363
Tumor
0.5
661
Tumor
0.5
737
Tumor
0.5
435
Tumor
0.5
271
Tumor
0.5
743
Tumor
0.5
975
Tumor
0.5
415
Tumor
0.5
1021
Tumor
0.5
277
Tumor
0.5
937
Tumor
0.5
857
Tumor
0.5
411
Tumor
0.5
221
Tumor
0.5
967
Tumor
0.4
447
Tumor
0.4
331
Tumor
0.4
497
Tumor
0.4
913
Tumor
0.4
916
Normal
0.4
881
Tumor
0.4
534
Normal
0.4
957
Tumor
0.4
227
Tumor
0.4
627
Tumor
0.4
977
Tumor
0.4
477
Tumor
0.4
383
Tumor
0.4
123
Tumor
0.4
461
Tumor
0.4
921
Tumor
0.4
425
Tumor
0.4
355
Tumor
0.4
498
Normal
0.3
524
Normal
0.3
445
Tumor
0.3
367
Tumor
0.3
1032
Normal
0.3
192
Normal
0.3
814
Normal
0.3
953
Tumor
0.3
567
Tumor
0.3
487
Tumor
0.3
981
Tumor
0.3
478
Normal
0.3
922
Normal
0.3
785
Tumor
0.3
357
Tumor
0.3
563
Tumor
0.3
963
Tumor
0.3
863
Tumor
0.3
284
Normal
0.3
958
Normal
0.3
513
Tumor
0.3
874
Normal
0.2
546
Normal
0.2
964
Normal
0.2
817
Tumor
0.2
954
Normal
0.2
492
Normal
0.2
926
Normal
0.2
1013
Tumor
0.2
915
Tumor
0.2
617
Tumor
0.2
818
Normal
0.2
483
Tumor
0.2
865
Tumor
0.2
924
Normal
0.2
515
Tumor
0.2
228
Normal
0.2
528
Normal
0.2
1043
Tumor
0.2
341
Tumor
0.2
375
Tumor
0.2
147
Tumor
0.2
1042
Normal
0.2
686
Normal
0.2
976
Normal
0.2
416
Normal
0.2
878
Normal
0.1
433
Tumor
0.1
1045
Tumor
0.1
536
Normal
0.1
918
Normal
0.1
868
Normal
0.1
615
Tumor
0.1
444
Normal
0.1
912
Normal
0.1
858
Normal
0.1
185
Tumor
0.1
823
Tumor
0.1
813
Tumor
0.1
212
Normal
0.1
873
Tumor
0.1
721
Tumor
0.1
641
Tumor
0.1
867
Tumor
0.1
884
Normal
0.1
434
Normal
0.1
493
Tumor
0.1
1025
Tumor
0.1
883
Tumor
0.1
744
Normal
0.1
482
Normal
0.1
446
Normal
0.1
533
Tumor
0.1
1022
Normal
0.1
231
Tumor
0.1
516
Normal
0.1
432
Normal
0.1
472
Normal
0.1
636
Normal
0.1
882
Normal
0.1
481
Tumor
0.1
488
Normal
0.1
861
Tumor
0.1
1044
Normal
0.1
431
Tumor
0.0
696
Normal
0.0
714
Normal
0.0
484
Normal
0.0
642
Normal
0.0
313
Tumor
0.0
545
Tumor
0.0
697
Tumor
0.0
923
Tumor
0.0
951
Tumor
0.0
146
Normal
0.0
297
Tumor
0.0
866
Normal
0.0
384
Normal
0.0
412
Normal
0.0
364
Normal
0.0
448
Normal
0.0
911
Tumor
0.0
852
Normal
0.0
571
Tumor
0.0
361
Tumor
0.0
356
Normal
0.0
423
Tumor
0.0
526
Normal
0.0
925
Tumor
0.0
213
Tumor
0.0
716
Normal
0.0
944
Normal
0.0
665
Tumor
0.0
917
Tumor
0.0
537
Tumor
0.0
352
Normal
0.0
491
Tumor
0.0
824
Normal
0.0
171
Tumor
0.0
468
Normal
0.0
514
Normal
0.0
494
Normal
0.0
1014
Normal
-0.1
368
Normal
-0.1
538
Normal
-0.1
672
Normal
-0.1
554
Normal
-0.1
413
Tumor
-0.1
984
Normal
-0.1
864
Normal
-0.1
474
Normal
-0.1
616
Normal
-0.1
722
Normal
-0.1
713
Tumor
-0.1
465
Tumor
-0.1
351
Tumor
-0.1
523
Tumor
-0.1
698
Normal
-0.1
968
Normal
-0.1
517
Tumor
-0.1
777
Tumor
-0.1
138
Normal
-0.1
618
Normal
-0.1
628
Normal
-0.1
463
Tumor
-0.1
914
Normal
-0.1
573
Tumor
-0.1
467
Tumor
-0.1
938
Normal
-0.1
755
Tumor
-0.1
877
Tumor
-0.1
952
Normal
-0.1
671
Tumor
-0.1
141
Tumor
-0.1
741
Tumor
-0.1
455
Tumor
-0.1
267
Tumor
-0.1
142
Normal
-0.1
816
Normal
-0.1
354
Normal
-0.2
462
Normal
-0.2
344
Normal
-0.2
466
Normal
-0.2
1028
Normal
-0.2
286
Normal
-0.2
851
Tumor
-0.2
862
Normal
-0.2
443
Tumor
-0.2
162
Normal
-0.2
1015
Tumor
-0.2
451
Tumor
-0.2
327
Tumor
-0.2
572
Normal
-0.2
285
Tumor
-0.2
268
Normal
-0.2
715
Tumor
-0.2
1041
Tumor
-0.2
724
Normal
-0.2
223
Tumor
-0.2
553
Tumor
-0.2
188
Normal
-0.2
125
Tumor
-0.2
518
Normal
-0.2
436
Normal
-0.2
342
Normal
-0.2
172
Normal
-0.2
464
Normal
-0.2
635
Tumor
-0.2
728
Normal
-0.2
1026
Normal
-0.2
456
Normal
-0.2
362
Normal
-0.2
365
Tumor
-0.2
956
Normal
-0.3
421
Tumor
-0.3
452
Normal
-0.3
786
Normal
-0.3
376
Normal
-0.3
148
Normal
-0.3
343
Tumor
-0.3
966
Normal
-0.3
186
Normal
-0.3
217
Tumor
-0.3
558
Normal
-0.3
132
Normal
-0.3
778
Normal
-0.3
746
Normal
-0.3
136
Normal
-0.3
663
Tumor
-0.3
257
Tumor
-0.3
328
Normal
-0.3
685
Tumor
-0.3
112
Tumor
-0.3
145
Tumor
-0.3
111
Normal
-0.3
386
Normal
-0.4
664
Normal
-0.4
311
Tumor
-0.4
742
Normal
-0.4
358
Normal
-0.4
126
Normal
-0.4
187
Tumor
-0.4
314
Normal
-0.4
982
Normal
-0.4
261
Tumor
-0.4
738
Normal
-0.4
366
Normal
-0.4
422
Normal
-0.4
527
Tumor
-0.4
332
Normal
-0.4
1027
Tumor
-0.4
353
Tumor
-0.4
428
Normal
-0.4
723
Tumor
-0.4
426
Normal
-0.4
574
Normal
-0.4
262
Normal
-0.4
666
Normal
-0.4
745
Tumor
-0.4
1016
Normal
-0.4
391
Tumor
-0.5
662
Normal
-0.5
388
Normal
-0.5
978
Normal
-0.5
535
Tumor
-0.5
414
Normal
-0.5
278
Normal
-0.5
387
Tumor
-0.5
424
Normal
-0.5
312
Normal
-0.5
124
Normal
-0.5
392
Normal
-0.5
114
Normal
-0.5
648
Normal
-0.5
815
Tumor
-0.5
232
Normal
-0.5
214
Normal
-0.5
955
Tumor
-0.5
137
Tumor
-0.5
272
Normal
-0.5
128
Normal
-0.6
258
Normal
-0.6
756
Normal
-0.6
196
Normal
-0.6
564
Normal
-0.6
568
Normal
-0.6
695
Tumor
-0.6
218
Normal
-0.6
298
Normal
-0.6
396
Normal
-0.7
135
Tumor
-0.7
394
Normal
-0.7
983
Tumor
-0.7
191
Tumor
-0.8
113
Tumor
-0.8
195
Tumor
-0.9
557
Tumor
-0.9
222
Normal
-1.0
127
Tumor
-1.0
395
Tumor
-1.7
393
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
