MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.5 nTPM
HPA Brain:125.0 nTPM
GTEx:78.5 nTPM
FANTOM5:134.3 Scaled Tags Per Million
Pig:103.5 nTPM
Mouse:46.0 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 125.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.3
2586 Male, age 75, left hemisphere 126.0
2411 Female, age 72, unknown 113.5
2828 Female, age 72, unknown 113.3
1870 Female, age 42, unknown 110.7
2219 Male, age 76, both hemispheres 98.1
1827 Male, age 72, unknown 97.3
1833 Male, age 53, unknown 93.8
2019 Male, age 18, unknown 93.6
1830 Male, age 51, unknown 90.2
2666 Male, age 74, left hemisphere 76.7
Dorsal raphe nucleus
nTPM: 117.5
2750 Male, age 76, both hemispheres 131.3
2298 Female, age 72, unknown 129.3
2047 Male, age 72, unknown 122.9
2016 Female, age 72, unknown 109.5
1828 Male, age 53, unknown 94.6
Inferior colliculus
nTPM: 98.6
2097 Female, age 72, unknown 112.4
1890 Male, age 53, unknown 98.1
1848 Female, age 42, unknown 93.2
2849 Male, age 72, unknown 90.6
Median raphe nucleus
nTPM: 112.3
2220 Male, age 76, midline 112.3
Periaquaductal grey, anterior
nTPM: 125.0
1947 Male, age 18, unknown 129.5
1795 Male, age 51, unknown 124.7
2502 Female, age 75, unknown 120.7
Periaquaductal grey, dorsal
nTPM: 93.5
1840 Male, age 53, unknown 104.1
2850 Male, age 76, both hemispheres 92.8
2464 Female, age 72, unknown 90.5
1831 Male, age 72, unknown 86.7
Periaquaductal grey, lateral
nTPM: 117.8
2272 Male, age 74, both hemispheres 133.9
2140 Male, age 76, both hemispheres 118.3
2053 Male, age 18, unknown 101.0
Pretectal area
nTPM: 106.9
2273 Male, age 74, both hemispheres 141.6
2224 Female, age 72, unknown 119.3
2667 Female, age 75, unknown 111.1
2007 Male, age 72, unknown 108.2
2316 Male, age 76, right hemisphere 107.9
2825 Male, age 18, unknown 106.9
1816 Male, age 51, unknown 98.7
1944 Female, age 72, unknown 98.5
2407 Male, age 75, both hemispheres 96.2
1817 Female, age 42, unknown 95.2
1815 Male, age 53, unknown 92.1
Red nucleus
nTPM: 96.4
2227 Male, age 72, unknown 111.5
2503 Female, age 72, unknown 110.0
2769 Male, age 72, unknown 108.9
2785 Male, age 18, unknown 107.5
1904 Male, age 53, unknown 101.8
2588 Male, age 74, left hemisphere 96.1
1954 Female, age 42, unknown 92.0
2584 Male, age 75, left hemisphere 91.2
2725 Female, age 75, unknown 87.6
1865 Male, age 51, unknown 85.4
1821 Female, age 72, unknown 83.7
2823 Male, age 76, right hemisphere 81.1
Substantia nigra
nTPM: 98.0
1916 Female, age 42, unknown 126.1
1851 Male, age 51, unknown 120.1
1941 Male, age 53, unknown 110.0
1889 Female, age 72, unknown 100.2
2590 Female, age 75, unknown 96.9
2583 Male, age 75, right hemisphere 96.2
2241 Male, age 72, unknown 92.0
2699 Male, age 18, unknown 88.2
2665 Male, age 74, both hemispheres 79.9
2409 Female, age 72, unknown 70.9
Superior colliculus
nTPM: 99.7
1796 Male, age 53, unknown 118.9
2261 Male, age 18, unknown 115.2
2668 Female, age 75, unknown 106.9
2587 Male, age 74, left hemisphere 105.5
1913 Female, age 42, unknown 101.9
1839 Male, age 51, unknown 96.5
2664 Male, age 75, both hemispheres 92.9
1895 Male, age 76, right hemisphere 88.6
1995 Male, age 72, unknown 88.3
2087 Female, age 72, unknown 82.5
Ventral tegmental area
nTPM: 112.2
1942 Male, age 51, unknown 124.4
1915 Female, age 42, unknown 118.2
2410 Female, age 72, unknown 112.6
2218 Male, age 76, both hemispheres 109.8
2021 Male, age 53, unknown 105.4
2223 Female, age 72, unknown 102.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 78.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.5
Samples: 139

Max nTPM: 151.0
Min nTPM: 41.0
Std nTPM: 19.9
Median nTPM: 75.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 151.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 140.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 135.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 134.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 127.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 122.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 122.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 120.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 113.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 108.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 106.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 134.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 134.3
FF:10158-103A5 76 years, female 134.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 103.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 90.7
Samples: 4

Max nTPM: 109.5
Min nTPM: 73.6
Sample A Female 109.5
Sample B Female 73.6
Sample C Male 101.6
Sample D Male 78.1
Midbrain
nTPM: 103.5
Samples: 4

Max nTPM: 129.0
Min nTPM: 83.4
Sample A Female 129.0
Sample B Female 83.4
Sample C Male 100.9
Sample D Male 100.6
Periaqueductal gray
nTPM: 83.8
Samples: 3

Max nTPM: 94.4
Min nTPM: 77.1
Sample B Female 77.1
Sample C Male 94.4
Sample D Male 80.0
Superior colliculi
nTPM: 101.4
Samples: 4

Max nTPM: 112.3
Min nTPM: 89.7
Sample A Female 112.3
Sample B Female 106.7
Sample C Male 89.7
Sample D Male 97.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 46.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 52.4
Min nTPM: 41.0
Sample A Male 52.4
Sample B Male 41.2
Sample C Female 41.0
Sample D Female 49.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
74581086 Antisense, RP_060215_02_E06, Mouse strain C57BL/6J (56 days, male) 0.5

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