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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEX11G is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEX11G is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.6
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
981
Tumor
1.4
742
Normal
1.2
954
Normal
1.1
648
Normal
1.1
911
Tumor
1.1
388
Normal
1.0
938
Normal
1.0
494
Normal
1.0
615
Tumor
1.0
232
Normal
1.0
666
Normal
0.9
356
Normal
0.9
868
Normal
0.9
616
Normal
0.9
1032
Normal
0.9
132
Normal
0.9
114
Normal
0.9
958
Normal
0.9
636
Normal
0.9
484
Normal
0.9
436
Normal
0.9
148
Normal
0.8
272
Normal
0.8
816
Normal
0.8
514
Normal
0.8
172
Normal
0.8
314
Normal
0.8
824
Normal
0.8
128
Normal
0.8
534
Normal
0.8
866
Normal
0.8
564
Normal
0.8
1041
Tumor
0.8
412
Normal
0.8
618
Normal
0.8
738
Normal
0.8
366
Normal
0.8
462
Normal
0.8
268
Normal
0.8
864
Normal
0.8
662
Normal
0.8
446
Normal
0.8
723
Tumor
0.7
572
Normal
0.7
466
Normal
0.7
136
Normal
0.7
428
Normal
0.7
354
Normal
0.7
818
Normal
0.7
423
Tumor
0.7
568
Normal
0.7
464
Normal
0.7
878
Normal
0.7
628
Normal
0.7
298
Normal
0.7
1016
Normal
0.7
196
Normal
0.7
913
Tumor
0.7
746
Normal
0.7
384
Normal
0.7
964
Normal
0.7
574
Normal
0.7
722
Normal
0.7
353
Tumor
0.7
858
Normal
0.7
432
Normal
0.7
422
Normal
0.7
1014
Normal
0.7
862
Normal
0.7
362
Normal
0.7
228
Normal
0.7
482
Normal
0.7
342
Normal
0.7
546
Normal
0.7
111
Normal
0.6
358
Normal
0.6
258
Normal
0.6
978
Normal
0.6
728
Normal
0.6
664
Normal
0.6
714
Normal
0.6
642
Normal
0.6
452
Normal
0.6
414
Normal
0.6
741
Tumor
0.6
396
Normal
0.6
538
Normal
0.6
162
Normal
0.6
914
Normal
0.6
224
Normal
0.6
262
Normal
0.6
627
Tumor
0.6
882
Normal
0.6
1028
Normal
0.6
1046
Normal
0.6
364
Normal
0.6
468
Normal
0.6
912
Normal
0.6
984
Normal
0.6
1042
Normal
0.6
424
Normal
0.6
186
Normal
0.6
465
Tumor
0.6
852
Normal
0.6
214
Normal
0.5
922
Normal
0.5
222
Normal
0.5
376
Normal
0.5
874
Normal
0.5
698
Normal
0.5
284
Normal
0.5
786
Normal
0.5
426
Normal
0.5
278
Normal
0.5
944
Normal
0.5
126
Normal
0.5
1026
Normal
0.5
554
Normal
0.5
352
Normal
0.5
526
Normal
0.5
474
Normal
0.5
124
Normal
0.5
756
Normal
0.5
955
Tumor
0.4
332
Normal
0.4
416
Normal
0.4
286
Normal
0.4
884
Normal
0.4
138
Normal
0.4
448
Normal
0.4
137
Tumor
0.4
926
Normal
0.4
344
Normal
0.4
976
Normal
0.4
365
Tumor
0.4
146
Normal
0.4
456
Normal
0.4
558
Normal
0.4
394
Normal
0.4
528
Normal
0.4
1044
Normal
0.4
1022
Normal
0.4
686
Normal
0.4
444
Normal
0.4
312
Normal
0.4
672
Normal
0.3
488
Normal
0.3
513
Tumor
0.3
188
Normal
0.3
867
Tumor
0.3
481
Tumor
0.3
744
Normal
0.3
516
Normal
0.3
1045
Tumor
0.3
261
Tumor
0.3
857
Tumor
0.3
696
Normal
0.3
982
Normal
0.3
142
Normal
0.3
518
Normal
0.3
478
Normal
0.3
328
Normal
0.3
498
Normal
0.3
472
Normal
0.3
392
Normal
0.3
968
Normal
0.3
386
Normal
0.3
716
Normal
0.3
778
Normal
0.2
918
Normal
0.2
212
Normal
0.2
192
Normal
0.2
952
Normal
0.2
492
Normal
0.1
195
Tumor
0.1
368
Normal
0.1
956
Normal
0.1
524
Normal
0.1
755
Tumor
0.1
785
Tumor
0.1
916
Normal
0.1
145
Tumor
0.1
641
Tumor
0.1
218
Normal
0.0
924
Normal
0.0
966
Normal
0.0
873
Tumor
-0.1
695
Tumor
-0.1
447
Tumor
-0.1
463
Tumor
-0.1
863
Tumor
-0.1
113
Tumor
-0.1
434
Normal
-0.1
357
Tumor
-0.1
112
Tumor
-0.1
861
Tumor
-0.2
536
Normal
-0.2
515
Tumor
-0.2
187
Tumor
-0.2
415
Tumor
-0.2
341
Tumor
-0.3
685
Tumor
-0.3
411
Tumor
-0.3
445
Tumor
-0.3
421
Tumor
-0.3
435
Tumor
-0.4
881
Tumor
-0.4
361
Tumor
-0.4
563
Tumor
-0.4
191
Tumor
-0.4
1031
Tumor
-0.4
915
Tumor
-0.4
461
Tumor
-0.4
141
Tumor
-0.4
721
Tumor
-0.4
1015
Tumor
-0.4
217
Tumor
-0.4
943
Tumor
-0.4
127
Tumor
-0.4
665
Tumor
-0.4
185
Tumor
-0.5
383
Tumor
-0.5
823
Tumor
-0.5
663
Tumor
-0.5
471
Tumor
-0.5
433
Tumor
-0.5
283
Tumor
-0.5
223
Tumor
-0.5
267
Tumor
-0.5
393
Tumor
-0.5
451
Tumor
-0.5
635
Tumor
-0.5
431
Tumor
-0.6
617
Tumor
-0.6
977
Tumor
-0.6
227
Tumor
-0.6
413
Tumor
-0.6
697
Tumor
-0.6
535
Tumor
-0.6
391
Tumor
-0.6
1043
Tumor
-0.6
455
Tumor
-0.6
527
Tumor
-0.6
343
Tumor
-0.6
467
Tumor
-0.6
877
Tumor
-0.6
727
Tumor
-0.6
815
Tumor
-0.6
487
Tumor
-0.6
713
Tumor
-0.6
313
Tumor
-0.6
477
Tumor
-0.7
777
Tumor
-0.7
571
Tumor
-0.7
883
Tumor
-0.7
925
Tumor
-0.7
745
Tumor
-0.7
953
Tumor
-0.7
395
Tumor
-0.7
553
Tumor
-0.7
171
Tumor
-0.7
917
Tumor
-0.7
671
Tumor
-0.7
443
Tumor
-0.7
647
Tumor
-0.8
523
Tumor
-0.8
271
Tumor
-0.8
533
Tumor
-0.8
557
Tumor
-0.8
351
Tumor
-0.8
814
Normal
-0.8
355
Tumor
-0.8
387
Tumor
-0.9
661
Tumor
-0.9
517
Tumor
-0.9
573
Tumor
-0.9
491
Tumor
-0.9
1027
Tumor
-0.9
715
Tumor
-0.9
161
Tumor
-0.9
367
Tumor
-0.9
211
Tumor
-1.0
135
Tumor
-1.0
425
Tumor
-1.0
375
Tumor
-1.0
221
Tumor
-1.0
865
Tumor
-1.0
525
Tumor
-1.0
963
Tumor
-1.0
427
Tumor
-1.0
545
Tumor
-1.0
257
Tumor
-1.0
331
Tumor
-1.0
493
Tumor
-1.1
297
Tumor
-1.1
567
Tumor
-1.1
311
Tumor
-1.1
737
Tumor
-1.1
125
Tumor
-1.2
231
Tumor
-1.2
1025
Tumor
-1.2
817
Tumor
-1.2
147
Tumor
-1.2
385
Tumor
-1.2
327
Tumor
-1.2
975
Tumor
-1.2
851
Tumor
-1.2
983
Tumor
-1.2
951
Tumor
-1.3
285
Tumor
-1.3
497
Tumor
-1.3
923
Tumor
-1.3
277
Tumor
-1.4
363
Tumor
-1.4
123
Tumor
-1.4
131
Tumor
-1.4
724
Normal
-1.4
213
Tumor
-1.4
813
Tumor
-1.4
743
Tumor
-1.5
1013
Tumor
-1.5
473
Tumor
-1.5
1021
Tumor
-1.6
921
Tumor
-1.6
937
Tumor
-1.7
537
Tumor
-1.7
967
Tumor
-1.7
483
Tumor
-1.7
957
Tumor
-2.0
965
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
