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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.1
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
713
Tumor
3.3
472
Normal
2.3
858
Normal
2.3
227
Tumor
2.1
572
Normal
2.0
516
Normal
2.0
958
Normal
1.9
363
Tumor
1.8
857
Tumor
1.7
464
Normal
1.7
385
Tumor
1.6
186
Normal
1.6
368
Normal
1.6
884
Normal
1.6
162
Normal
1.5
331
Tumor
1.4
327
Tumor
1.4
967
Tumor
1.4
192
Normal
1.3
878
Normal
1.2
114
Normal
1.2
434
Normal
1.1
982
Normal
1.1
922
Normal
1.1
546
Normal
1.1
672
Normal
1.0
534
Normal
1.0
491
Tumor
1.0
268
Normal
1.0
571
Tumor
1.0
697
Tumor
1.0
882
Normal
0.9
285
Tumor
0.9
538
Normal
0.9
671
Tumor
0.9
138
Normal
0.8
328
Normal
0.8
478
Normal
0.8
366
Normal
0.8
196
Normal
0.8
1032
Normal
0.7
386
Normal
0.7
526
Normal
0.7
917
Tumor
0.7
727
Tumor
0.7
312
Normal
0.6
218
Normal
0.6
662
Normal
0.6
314
Normal
0.6
332
Normal
0.6
384
Normal
0.6
146
Normal
0.6
816
Normal
0.6
1042
Normal
0.5
877
Tumor
0.5
818
Normal
0.5
864
Normal
0.5
984
Normal
0.5
824
Normal
0.5
916
Normal
0.5
514
Normal
0.5
422
Normal
0.5
394
Normal
0.5
642
Normal
0.5
222
Normal
0.5
814
Normal
0.5
574
Normal
0.5
444
Normal
0.4
278
Normal
0.4
918
Normal
0.4
956
Normal
0.4
297
Tumor
0.4
446
Normal
0.4
172
Normal
0.4
452
Normal
0.4
286
Normal
0.4
921
Tumor
0.4
716
Normal
0.4
298
Normal
0.4
224
Normal
0.4
484
Normal
0.3
536
Normal
0.3
744
Normal
0.3
1046
Normal
0.3
396
Normal
0.3
664
Normal
0.3
666
Normal
0.3
124
Normal
0.3
414
Normal
0.3
132
Normal
0.3
912
Normal
0.3
126
Normal
0.3
272
Normal
0.3
976
Normal
0.2
214
Normal
0.2
416
Normal
0.2
412
Normal
0.2
665
Tumor
0.2
492
Normal
0.2
874
Normal
0.2
498
Normal
0.2
128
Normal
0.2
554
Normal
0.2
376
Normal
0.2
284
Normal
0.2
217
Tumor
0.1
852
Normal
0.1
714
Normal
0.1
968
Normal
0.1
488
Normal
0.1
448
Normal
0.1
786
Normal
0.1
952
Normal
0.1
311
Tumor
0.1
738
Normal
0.1
914
Normal
0.1
866
Normal
0.1
924
Normal
0.0
191
Tumor
0.0
468
Normal
0.0
428
Normal
0.0
148
Normal
0.0
142
Normal
0.0
474
Normal
0.0
568
Normal
0.0
136
Normal
0.0
228
Normal
0.0
558
Normal
0.0
862
Normal
0.0
392
Normal
0.0
618
Normal
0.0
778
Normal
-0.1
195
Tumor
-0.1
742
Normal
-0.1
232
Normal
-0.1
388
Normal
-0.1
723
Tumor
-0.1
462
Normal
-0.1
722
Normal
-0.1
494
Normal
-0.1
482
Normal
-0.1
641
Tumor
-0.1
915
Tumor
-0.1
636
Normal
-0.2
364
Normal
-0.2
868
Normal
-0.2
258
Normal
-0.2
628
Normal
-0.2
715
Tumor
-0.2
686
Normal
-0.2
954
Normal
-0.2
466
Normal
-0.2
938
Normal
-0.2
283
Tumor
-0.2
944
Normal
-0.2
564
Normal
-0.2
966
Normal
-0.2
563
Tumor
-0.2
926
Normal
-0.2
648
Normal
-0.2
212
Normal
-0.2
188
Normal
-0.2
728
Normal
-0.3
223
Tumor
-0.3
313
Tumor
-0.3
424
Normal
-0.3
955
Tumor
-0.3
456
Normal
-0.3
696
Normal
-0.3
698
Normal
-0.3
746
Normal
-0.3
964
Normal
-0.3
978
Normal
-0.3
1044
Normal
-0.3
1014
Normal
-0.4
1022
Normal
-0.4
415
Tumor
-0.4
262
Normal
-0.4
721
Tumor
-0.4
213
Tumor
-0.4
616
Normal
-0.4
221
Tumor
-0.4
756
Normal
-0.4
426
Normal
-0.4
362
Normal
-0.4
463
Tumor
-0.4
553
Tumor
-0.4
851
Tumor
-0.4
421
Tumor
-0.4
137
Tumor
-0.4
451
Tumor
-0.5
277
Tumor
-0.5
518
Normal
-0.5
375
Tumor
-0.5
135
Tumor
-0.5
1043
Tumor
-0.5
413
Tumor
-0.5
963
Tumor
-0.5
111
Normal
-0.6
432
Normal
-0.6
185
Tumor
-0.6
187
Tumor
-0.6
383
Tumor
-0.6
481
Tumor
-0.7
528
Normal
-0.7
356
Normal
-0.7
461
Tumor
-0.7
145
Tumor
-0.7
433
Tumor
-0.7
1026
Normal
-0.8
1041
Tumor
-0.8
823
Tumor
-0.8
467
Tumor
-0.8
785
Tumor
-0.8
161
Tumor
-0.8
813
Tumor
-0.8
627
Tumor
-0.8
743
Tumor
-0.9
483
Tumor
-0.9
487
Tumor
-0.9
525
Tumor
-0.9
545
Tumor
-0.9
535
Tumor
-0.9
361
Tumor
-0.9
1016
Normal
-0.9
391
Tumor
-0.9
211
Tumor
-0.9
513
Tumor
-0.9
395
Tumor
-0.9
436
Normal
-0.9
141
Tumor
-1.0
455
Tumor
-1.0
965
Tumor
-1.0
447
Tumor
-1.0
477
Tumor
-1.0
943
Tumor
-1.0
515
Tumor
-1.0
523
Tumor
-1.0
737
Tumor
-1.0
524
Normal
-1.0
257
Tumor
-1.0
387
Tumor
-1.0
443
Tumor
-1.1
1045
Tumor
-1.1
471
Tumor
-1.1
573
Tumor
-1.1
724
Normal
-1.1
1028
Normal
-1.1
231
Tumor
-1.1
171
Tumor
-1.1
557
Tumor
-1.1
817
Tumor
-1.1
425
Tumor
-1.2
881
Tumor
-1.2
365
Tumor
-1.2
112
Tumor
-1.2
975
Tumor
-1.2
367
Tumor
-1.2
537
Tumor
-1.2
393
Tumor
-1.2
815
Tumor
-1.2
423
Tumor
-1.2
741
Tumor
-1.3
517
Tumor
-1.3
865
Tumor
-1.3
497
Tumor
-1.3
695
Tumor
-1.3
617
Tumor
-1.3
1025
Tumor
-1.3
913
Tumor
-1.4
527
Tumor
-1.4
127
Tumor
-1.4
473
Tumor
-1.4
271
Tumor
-1.4
777
Tumor
-1.4
267
Tumor
-1.5
883
Tumor
-1.5
355
Tumor
-1.5
533
Tumor
-1.5
1021
Tumor
-1.5
647
Tumor
-1.5
431
Tumor
-1.5
863
Tumor
-1.5
867
Tumor
-1.5
615
Tumor
-1.5
957
Tumor
-1.6
493
Tumor
-1.6
923
Tumor
-1.6
427
Tumor
-1.6
1015
Tumor
-1.6
113
Tumor
-1.6
445
Tumor
-1.6
465
Tumor
-1.6
567
Tumor
-1.6
953
Tumor
-1.6
1031
Tumor
-1.6
131
Tumor
-1.6
755
Tumor
-1.7
147
Tumor
-1.7
125
Tumor
-1.7
663
Tumor
-1.7
635
Tumor
-1.7
261
Tumor
-1.7
873
Tumor
-1.7
937
Tumor
-1.8
661
Tumor
-1.8
861
Tumor
-1.8
911
Tumor
-1.9
951
Tumor
-1.9
123
Tumor
-1.9
435
Tumor
-1.9
745
Tumor
-2.0
983
Tumor
-2.0
1027
Tumor
-2.1
411
Tumor
-2.2
925
Tumor
-2.3
981
Tumor
-2.4
1013
Tumor
-2.7
977
Tumor
-2.7
685
Tumor
-2.9
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
