We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIH1D1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
155.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
155.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
139.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
135.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
127.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
106.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
106.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
105.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
104.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
103.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
102.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
100.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
97.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
96.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
94.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
90.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
86.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
86.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
86.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
85.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
85.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
82.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
82.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
82.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
82.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
81.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
81.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
81.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
81.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
80.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
78.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
77.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
77.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
77.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
76.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
76.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
73.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
73.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
73.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
72.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
72.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
71.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
70.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
70.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
70.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
69.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
69.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
69.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
69.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
69.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
69.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
69.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
69.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
68.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
68.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
67.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
67.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
67.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
67.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
67.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
66.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
66.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
66.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
66.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
66.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
66.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
65.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
65.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
65.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
65.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
64.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
64.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
64.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
64.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
62.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
62.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
62.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
62.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
62.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
62.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
62.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
62.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
62.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
61.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
61.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
60.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
60.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
60.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
60.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
59.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
59.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
59.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
59.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
59.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
59.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
59.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
59.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
59.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
59.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
58.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
58.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
57.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
57.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
57.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
57.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
57.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
56.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
56.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
56.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
56.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
56.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
56.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
56.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
55.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
55.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
55.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
54.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
54.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
53.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
53.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
53.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
53.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
53.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
53.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
53.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
53.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
52.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
52.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
52.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
52.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
52.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
52.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
52.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
51.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
51.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
51.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
51.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
51.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
50.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
50.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
50.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
50.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
50.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
50.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
50.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
50.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
49.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
49.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
49.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
49.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
49.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
48.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
48.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
47.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
47.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
47.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
47.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
46.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
46.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
46.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
46.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
46.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
46.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
45.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
45.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
45.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
45.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
44.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
44.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
44.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
44.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
43.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
43.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
43.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
43.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
43.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
43.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
42.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
42.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
42.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
42.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
41.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
41.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
41.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
41.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
40.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
40.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
39.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
39.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
39.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
39.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
38.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
38.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
38.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
37.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
37.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
36.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
36.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
36.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
35.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
34.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
34.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
33.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
28.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIH1D1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.7
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
140.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
126.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
105.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
81.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
77.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
72.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
69.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
69.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
69.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
68.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
68.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
63.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
63.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
62.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
62.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
62.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
61.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
59.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
58.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
57.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
56.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
56.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
55.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
55.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
55.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
54.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
53.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
53.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
53.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
52.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
52.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
51.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
51.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
51.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
51.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
50.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
50.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
49.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
46.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
46.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
46.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
45.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
45.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
44.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
44.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
44.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
44.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
43.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
42.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
42.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
41.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
41.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
41.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
39.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
39.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
38.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
38.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
38.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
38.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
35.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
35.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
34.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
34.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
29.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.0
473
Tumor
0.8
351
Tumor
0.8
123
Tumor
0.7
661
Tumor
0.7
567
Tumor
0.6
147
Tumor
0.6
635
Tumor
0.6
865
Tumor
0.6
1021
Tumor
0.6
391
Tumor
0.6
967
Tumor
0.6
425
Tumor
0.5
341
Tumor
0.5
745
Tumor
0.5
375
Tumor
0.5
943
Tumor
0.5
431
Tumor
0.5
1013
Tumor
0.5
671
Tumor
0.5
131
Tumor
0.5
367
Tumor
0.5
331
Tumor
0.4
724
Normal
0.4
463
Tumor
0.4
983
Tumor
0.4
387
Tumor
0.4
125
Tumor
0.4
647
Tumor
0.4
777
Tumor
0.4
665
Tumor
0.4
353
Tumor
0.4
213
Tumor
0.4
663
Tumor
0.4
487
Tumor
0.4
517
Tumor
0.4
277
Tumor
0.4
112
Tumor
0.4
737
Tumor
0.4
513
Tumor
0.4
211
Tumor
0.3
497
Tumor
0.3
393
Tumor
0.3
171
Tumor
0.3
427
Tumor
0.3
483
Tumor
0.3
523
Tumor
0.3
515
Tumor
0.3
388
Normal
0.3
863
Tumor
0.3
395
Tumor
0.3
365
Tumor
0.3
267
Tumor
0.3
327
Tumor
0.3
443
Tumor
0.3
481
Tumor
0.3
285
Tumor
0.3
525
Tumor
0.3
785
Tumor
0.3
433
Tumor
0.2
257
Tumor
0.2
187
Tumor
0.2
162
Normal
0.2
141
Tumor
0.2
573
Tumor
0.2
435
Tumor
0.2
627
Tumor
0.2
755
Tumor
0.2
743
Tumor
0.2
413
Tumor
0.2
955
Tumor
0.2
221
Tumor
0.2
695
Tumor
0.2
148
Normal
0.2
217
Tumor
0.2
127
Tumor
0.2
313
Tumor
0.2
383
Tumor
0.2
921
Tumor
0.2
161
Tumor
0.2
617
Tumor
0.2
385
Tumor
0.2
188
Normal
0.2
355
Tumor
0.2
361
Tumor
0.2
823
Tumor
0.2
416
Normal
0.2
191
Tumor
0.2
951
Tumor
0.2
493
Tumor
0.2
451
Tumor
0.2
311
Tumor
0.2
492
Normal
0.2
937
Tumor
0.2
953
Tumor
0.2
815
Tumor
0.2
881
Tumor
0.2
727
Tumor
0.2
722
Normal
0.2
557
Tumor
0.1
357
Tumor
0.1
861
Tumor
0.1
186
Normal
0.1
851
Tumor
0.1
137
Tumor
0.1
873
Tumor
0.1
524
Normal
0.1
498
Normal
0.1
113
Tumor
0.1
386
Normal
0.1
957
Tumor
0.1
615
Tumor
0.1
396
Normal
0.1
818
Normal
0.1
526
Normal
0.1
482
Normal
0.1
672
Normal
0.1
648
Normal
0.1
461
Tumor
0.1
447
Tumor
0.1
394
Normal
0.1
685
Tumor
0.1
343
Tumor
0.1
868
Normal
0.1
423
Tumor
0.1
114
Normal
0.1
415
Tumor
0.1
363
Tumor
0.1
362
Normal
0.1
465
Tumor
0.1
231
Tumor
0.1
641
Tumor
0.1
297
Tumor
0.1
913
Tumor
0.1
877
Tumor
0.1
527
Tumor
0.1
428
Normal
0.1
422
Normal
0.1
721
Tumor
0.1
124
Normal
0.1
813
Tumor
0.1
514
Normal
0.1
571
Tumor
0.1
444
Normal
0.1
446
Normal
0.1
462
Normal
0.0
312
Normal
0.0
1043
Tumor
0.0
977
Tumor
0.0
664
Normal
0.0
867
Tumor
0.0
814
Normal
0.0
662
Normal
0.0
455
Tumor
0.0
864
Normal
0.0
963
Tumor
0.0
414
Normal
0.0
884
Normal
0.0
857
Tumor
0.0
714
Normal
0.0
1031
Tumor
0.0
364
Normal
0.0
926
Normal
0.0
964
Normal
0.0
817
Tumor
0.0
852
Normal
0.0
966
Normal
0.0
472
Normal
0.0
568
Normal
0.0
516
Normal
0.0
286
Normal
0.0
491
Tumor
0.0
912
Normal
0.0
392
Normal
0.0
756
Normal
0.0
421
Tumor
0.0
533
Tumor
0.0
145
Tumor
0.0
484
Normal
0.0
283
Tumor
N/A
128
Normal
0.0
424
Normal
0.0
535
Tumor
0.0
356
Normal
0.0
172
Normal
0.0
467
Tumor
0.0
271
Tumor
0.0
958
Normal
0.0
368
Normal
0.0
384
Normal
0.0
185
Tumor
0.0
474
Normal
0.0
564
Normal
0.0
911
Tumor
0.0
858
Normal
0.0
261
Tumor
0.0
642
Normal
0.0
494
Normal
0.0
716
Normal
0.0
558
Normal
0.0
978
Normal
0.0
411
Tumor
0.0
434
Normal
0.0
574
Normal
0.0
228
Normal
0.0
1042
Normal
0.0
352
Normal
0.0
915
Tumor
0.0
218
Normal
0.0
537
Tumor
0.0
976
Normal
0.0
412
Normal
0.0
1041
Tumor
0.0
824
Normal
0.0
686
Normal
0.0
696
Normal
0.0
195
Tumor
-0.1
975
Tumor
-0.1
918
Normal
-0.1
1026
Normal
-0.1
456
Normal
-0.1
314
Normal
-0.1
376
Normal
-0.1
126
Normal
-0.1
786
Normal
-0.1
968
Normal
-0.1
268
Normal
-0.1
925
Tumor
-0.1
258
Normal
-0.1
874
Normal
-0.1
741
Tumor
-0.1
1027
Tumor
-0.1
358
Normal
-0.1
917
Tumor
-0.1
366
Normal
-0.1
956
Normal
-0.1
563
Tumor
-0.1
214
Normal
-0.1
426
Normal
-0.1
1032
Normal
-0.1
111
Normal
-0.1
284
Normal
-0.1
298
Normal
-0.1
138
Normal
-0.1
135
Tumor
-0.1
432
Normal
-0.1
342
Normal
-0.1
478
Normal
-0.1
136
Normal
-0.1
534
Normal
-0.1
354
Normal
-0.1
816
Normal
-0.1
488
Normal
-0.1
883
Tumor
-0.1
132
Normal
-0.1
332
Normal
-0.1
723
Tumor
-0.1
952
Normal
-0.1
192
Normal
-0.1
728
Normal
-0.1
142
Normal
-0.1
866
Normal
-0.1
227
Tumor
-0.1
738
Normal
-0.1
778
Normal
-0.1
1045
Tumor
-0.1
262
Normal
-0.1
666
Normal
-0.1
715
Tumor
-0.1
914
Normal
-0.1
224
Normal
-0.1
954
Normal
-0.1
328
Normal
-0.1
882
Normal
-0.1
862
Normal
-0.1
272
Normal
-0.1
572
Normal
-0.1
278
Normal
-0.1
713
Tumor
-0.1
445
Tumor
-0.1
1044
Normal
-0.1
452
Normal
-0.1
528
Normal
-0.1
922
Normal
-0.1
546
Normal
-0.1
222
Normal
-0.2
1016
Normal
-0.2
436
Normal
-0.2
518
Normal
-0.2
1028
Normal
-0.2
938
Normal
-0.2
477
Tumor
-0.2
618
Normal
-0.2
1022
Normal
-0.2
468
Normal
-0.2
466
Normal
-0.2
1015
Tumor
-0.2
464
Normal
-0.2
223
Tumor
-0.2
636
Normal
-0.2
1046
Normal
-0.2
212
Normal
-0.2
697
Tumor
-0.2
628
Normal
-0.2
344
Normal
-0.2
538
Normal
-0.2
923
Tumor
-0.2
146
Normal
-0.2
554
Normal
-0.2
746
Normal
-0.2
916
Normal
-0.2
232
Normal
-0.2
196
Normal
-0.2
1025
Tumor
-0.2
536
Normal
-0.3
553
Tumor
-0.3
944
Normal
-0.3
982
Normal
-0.3
471
Tumor
-0.3
984
Normal
-0.3
924
Normal
-0.3
448
Normal
-0.3
742
Normal
-0.3
981
Tumor
-0.3
878
Normal
-0.3
1014
Normal
-0.3
698
Normal
-0.3
545
Tumor
-0.3
616
Normal
-0.4
744
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
