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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRNP70 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
281.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
152.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
139.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
111.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
108.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
108.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
107.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
96.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
96.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
94.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
91.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
91.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
91.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
90.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
90.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
90.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
90.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
88.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
87.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
86.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
84.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
83.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
83.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
82.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
82.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
81.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
79.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
79.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
78.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
78.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
77.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
77.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
77.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
77.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
76.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
75.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
75.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
73.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
72.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
72.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
70.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
70.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
69.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
69.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
69.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
69.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
69.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
68.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
68.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
68.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
68.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
67.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
66.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
66.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
65.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
64.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
63.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
62.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
62.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
62.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
61.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
61.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
61.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
60.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
59.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
59.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
58.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
58.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
57.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
57.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
57.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
57.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
56.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
56.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
56.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
56.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
55.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
55.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
55.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
55.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
55.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
54.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
54.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
54.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
53.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
53.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
53.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
53.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
53.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
52.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
52.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
52.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
52.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
52.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
52.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
51.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
51.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
51.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
51.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
50.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
50.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
50.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
50.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
50.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
49.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
49.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
48.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
48.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
48.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
47.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
47.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
47.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
47.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
46.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
46.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
45.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
45.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
45.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
45.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
44.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
44.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
43.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
43.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
43.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
43.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
42.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
42.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
42.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
42.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
42.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
42.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
42.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
42.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
42.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
42.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
42.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
42.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
42.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
41.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
41.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
41.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
41.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
41.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
41.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
40.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
40.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
39.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
38.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
38.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
38.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
38.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
38.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
37.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
37.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
37.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
36.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
36.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
36.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
35.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
35.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
35.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
34.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
31.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
30.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
30.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
28.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRNP70 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
116.7
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
706.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
383.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
365.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
343.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
320.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
312.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
311.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
310.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
292.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
274.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
265.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
235.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
235.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
222.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
220.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
216.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
213.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
212.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
207.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
204.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
196.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
196.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
195.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
194.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
194.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
188.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
185.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
182.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
175.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
173.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
167.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
167.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
164.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
161.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
160.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
158.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
157.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
153.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
152.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
150.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
150.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
147.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
147.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
146.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
145.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
143.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
143.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
143.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
140.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
140.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
139.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
139.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
139.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
137.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
136.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
136.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
134.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
133.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
133.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
130.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
129.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
129.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
127.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
127.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
123.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
121.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
121.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
119.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
118.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
117.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
117.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
117.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
116.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
115.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
115.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
115.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
114.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
113.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
112.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
111.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
111.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
110.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
110.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
110.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
109.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
109.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
109.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
105.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
105.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
105.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
105.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
105.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
105.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
104.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
104.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
103.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
103.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
103.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
103.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
103.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
102.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
102.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
100.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
100.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
100.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
99.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
99.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
99.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
98.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
97.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
96.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
96.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
96.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
96.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
96.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
95.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
95.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
95.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
95.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
95.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
95.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
95.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
95.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
94.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
94.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
93.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
93.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
93.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
93.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
92.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
92.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
92.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
91.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
90.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
89.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
89.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
89.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
88.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
88.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
87.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
87.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
87.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
87.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
86.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
86.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
86.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
86.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
86.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
85.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
85.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
84.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
84.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
84.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
84.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
84.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
84.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
84.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
84.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
83.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
83.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
82.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
82.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
81.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
81.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
80.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
80.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
80.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
79.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
79.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
78.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
78.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
78.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
78.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
78.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
78.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
77.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
77.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
77.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
76.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
76.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
76.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
76.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
76.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
76.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
75.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
75.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
74.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
74.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
74.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
72.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
72.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
71.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
71.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
71.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
71.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
71.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
70.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
69.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
69.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
69.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
68.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
66.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
66.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
66.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
66.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
65.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
65.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
64.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
64.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
64.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
63.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
63.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
62.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
60.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
59.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
59.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
59.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
58.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
57.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
56.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
56.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
54.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
53.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
53.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
53.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
49.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
49.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
39.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.9
661
Tumor
0.8
983
Tumor
0.8
285
Tumor
0.8
957
Tumor
0.7
497
Tumor
0.7
951
Tumor
0.7
131
Tumor
0.7
967
Tumor
0.7
473
Tumor
0.7
523
Tumor
0.7
355
Tumor
0.6
865
Tumor
0.6
545
Tumor
0.6
211
Tumor
0.6
535
Tumor
0.6
1031
Tumor
0.5
647
Tumor
0.5
977
Tumor
0.5
411
Tumor
0.5
937
Tumor
0.5
367
Tumor
0.5
351
Tumor
0.5
533
Tumor
0.5
975
Tumor
0.5
943
Tumor
0.5
331
Tumor
0.5
537
Tumor
0.5
527
Tumor
0.5
1013
Tumor
0.4
413
Tumor
0.4
463
Tumor
0.4
921
Tumor
0.4
1041
Tumor
0.4
743
Tumor
0.4
815
Tumor
0.4
695
Tumor
0.4
737
Tumor
0.4
727
Tumor
0.4
1021
Tumor
0.4
443
Tumor
0.4
517
Tumor
0.4
493
Tumor
0.4
277
Tumor
0.4
917
Tumor
0.4
487
Tumor
0.4
697
Tumor
0.4
923
Tumor
0.4
431
Tumor
0.4
483
Tumor
0.4
663
Tumor
0.3
267
Tumor
0.3
963
Tumor
0.3
881
Tumor
0.3
1025
Tumor
0.3
877
Tumor
0.3
715
Tumor
0.3
427
Tumor
0.3
135
Tumor
0.3
161
Tumor
0.3
685
Tumor
0.3
467
Tumor
0.3
447
Tumor
0.3
385
Tumor
0.3
567
Tumor
0.3
861
Tumor
0.3
524
Normal
0.3
415
Tumor
0.3
553
Tumor
0.3
283
Tumor
0.3
112
Tumor
0.3
777
Tumor
0.3
724
Normal
0.3
433
Tumor
0.3
227
Tumor
0.3
363
Tumor
0.3
513
Tumor
0.3
425
Tumor
0.3
297
Tumor
0.3
817
Tumor
0.2
525
Tumor
0.2
141
Tumor
0.2
471
Tumor
0.2
665
Tumor
0.2
123
Tumor
0.2
1015
Tumor
0.2
571
Tumor
0.2
515
Tumor
0.2
635
Tumor
0.2
873
Tumor
0.2
536
Normal
0.2
357
Tumor
0.2
785
Tumor
0.2
925
Tumor
0.2
913
Tumor
0.2
557
Tumor
0.2
477
Tumor
0.2
491
Tumor
0.2
492
Normal
0.2
391
Tumor
0.2
641
Tumor
0.2
671
Tumor
0.2
883
Tumor
0.2
383
Tumor
0.2
814
Normal
0.2
455
Tumor
0.2
563
Tumor
0.2
721
Tumor
0.2
271
Tumor
0.2
911
Tumor
0.2
481
Tumor
0.1
554
Normal
0.1
534
Normal
0.1
185
Tumor
0.1
953
Tumor
0.1
313
Tumor
0.1
375
Tumor
0.1
538
Normal
0.1
955
Tumor
0.1
341
Tumor
0.1
451
Tumor
0.1
617
Tumor
0.1
755
Tumor
0.1
478
Normal
0.1
867
Tumor
0.1
981
Tumor
0.1
461
Tumor
0.1
916
Normal
0.1
1014
Normal
0.1
423
Tumor
0.1
221
Tumor
0.1
1045
Tumor
0.1
938
Normal
0.1
261
Tumor
0.1
741
Tumor
0.1
984
Normal
0.1
857
Tumor
0.1
572
Normal
0.1
113
Tumor
0.1
465
Tumor
0.1
484
Normal
0.1
915
Tumor
0.1
445
Tumor
0.1
851
Tumor
0.1
187
Tumor
0.1
435
Tumor
0.1
412
Normal
0.1
231
Tumor
0.1
498
Normal
0.1
686
Normal
0.1
958
Normal
0.1
361
Tumor
0.1
823
Tumor
0.1
311
Tumor
0.0
966
Normal
0.0
125
Tumor
0.0
1032
Normal
0.0
223
Tumor
0.0
964
Normal
0.0
924
Normal
0.0
488
Normal
0.0
191
Tumor
0.0
978
Normal
0.0
516
Normal
0.0
922
Normal
0.0
365
Tumor
0.0
444
Normal
0.0
212
Normal
0.0
878
Normal
0.0
213
Tumor
0.0
393
Tumor
0.0
863
Tumor
0.0
387
Tumor
0.0
756
Normal
0.0
327
Tumor
0.0
882
Normal
0.0
395
Tumor
0.0
1026
Normal
0.0
344
Normal
0.0
147
Tumor
0.0
353
Tumor
0.0
328
Normal
0.0
918
Normal
0.0
1028
Normal
0.0
1022
Normal
0.0
343
Tumor
0.0
714
Normal
0.0
573
Tumor
0.0
954
Normal
0.0
546
Normal
0.0
858
Normal
0.0
1043
Tumor
0.0
944
Normal
0.0
778
Normal
0.0
494
Normal
0.0
518
Normal
0.0
744
Normal
0.0
926
Normal
0.0
448
Normal
0.0
514
Normal
0.0
813
Tumor
0.0
558
Normal
0.0
884
Normal
0.0
145
Tumor
0.0
332
Normal
0.0
1044
Normal
0.0
968
Normal
0.0
434
Normal
0.0
1046
Normal
0.0
526
Normal
0.0
142
Normal
-0.1
713
Tumor
-0.1
127
Tumor
-0.1
1042
Normal
-0.1
195
Tumor
-0.1
472
Normal
-0.1
284
Normal
-0.1
616
Normal
-0.1
224
Normal
-0.1
421
Tumor
-0.1
716
Normal
-0.1
698
Normal
-0.1
376
Normal
-0.1
568
Normal
-0.1
268
Normal
-0.1
137
Tumor
-0.1
528
Normal
-0.1
428
Normal
-0.1
824
Normal
-0.1
171
Tumor
-0.1
384
Normal
-0.1
636
Normal
-0.1
352
Normal
-0.1
574
Normal
-0.1
952
Normal
-0.1
746
Normal
-0.1
482
Normal
-0.1
217
Tumor
-0.1
356
Normal
-0.1
738
Normal
-0.1
866
Normal
-0.1
364
Normal
-0.1
446
Normal
-0.1
696
Normal
-0.1
628
Normal
-0.1
786
Normal
-0.1
982
Normal
-0.1
474
Normal
-0.1
1027
Tumor
-0.1
298
Normal
-0.1
874
Normal
-0.1
228
Normal
-0.1
124
Normal
-0.1
162
Normal
-0.1
912
Normal
-0.1
648
Normal
-0.1
627
Tumor
-0.1
615
Tumor
-0.1
196
Normal
-0.1
818
Normal
-0.1
564
Normal
-0.1
728
Normal
-0.1
416
Normal
-0.1
432
Normal
-0.1
366
Normal
-0.1
126
Normal
-0.1
976
Normal
-0.1
662
Normal
-0.1
864
Normal
-0.1
342
Normal
-0.1
852
Normal
-0.1
314
Normal
-0.1
386
Normal
-0.1
462
Normal
-0.1
257
Tumor
-0.2
1016
Normal
-0.2
426
Normal
-0.2
862
Normal
-0.2
664
Normal
-0.2
148
Normal
-0.2
723
Tumor
-0.2
956
Normal
-0.2
396
Normal
-0.2
128
Normal
-0.2
188
Normal
-0.2
466
Normal
-0.2
362
Normal
-0.2
286
Normal
-0.2
232
Normal
-0.2
368
Normal
-0.2
146
Normal
-0.2
114
Normal
-0.2
172
Normal
-0.2
278
Normal
-0.2
742
Normal
-0.2
722
Normal
-0.2
414
Normal
-0.2
392
Normal
-0.2
394
Normal
-0.2
312
Normal
-0.2
436
Normal
-0.2
132
Normal
-0.2
666
Normal
-0.2
672
Normal
-0.2
222
Normal
-0.2
218
Normal
-0.2
456
Normal
-0.2
618
Normal
-0.2
422
Normal
-0.2
214
Normal
-0.2
111
Normal
-0.2
464
Normal
-0.2
136
Normal
-0.2
424
Normal
-0.2
262
Normal
-0.2
258
Normal
-0.2
186
Normal
-0.2
138
Normal
-0.2
272
Normal
-0.2
816
Normal
-0.2
192
Normal
-0.2
468
Normal
-0.3
642
Normal
-0.3
452
Normal
-0.3
358
Normal
-0.3
868
Normal
-0.3
388
Normal
-0.3
354
Normal
-0.3
914
Normal
-0.3
745
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
