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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCM4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
65.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
62.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
61.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
59.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
57.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
52.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
51.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
47.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
47.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
43.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
42.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
42.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
38.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCM4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
68.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
47.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
37.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
37.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
35.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.9
497
Tumor
1.9
313
Tumor
1.8
463
Tumor
1.8
411
Tumor
1.7
161
Tumor
1.7
957
Tumor
1.7
865
Tumor
1.6
523
Tumor
1.5
1013
Tumor
1.5
285
Tumor
1.4
357
Tumor
1.4
355
Tumor
1.4
391
Tumor
1.4
413
Tumor
1.4
211
Tumor
1.3
951
Tumor
1.3
953
Tumor
1.3
663
Tumor
1.3
277
Tumor
1.3
427
Tumor
1.2
983
Tumor
1.2
487
Tumor
1.2
351
Tumor
1.2
724
Normal
1.1
387
Tumor
1.1
331
Tumor
1.1
465
Tumor
1.0
367
Tumor
1.0
815
Tumor
1.0
743
Tumor
1.0
923
Tumor
1.0
943
Tumor
0.9
375
Tumor
0.9
473
Tumor
0.8
525
Tumor
0.8
385
Tumor
0.8
661
Tumor
0.8
537
Tumor
0.8
491
Tumor
0.8
647
Tumor
0.8
283
Tumor
0.7
343
Tumor
0.7
814
Normal
0.7
131
Tumor
0.7
695
Tumor
0.7
493
Tumor
0.7
567
Tumor
0.7
813
Tumor
0.6
533
Tumor
0.6
883
Tumor
0.6
341
Tumor
0.6
671
Tumor
0.6
665
Tumor
0.6
213
Tumor
0.6
425
Tumor
0.6
1031
Tumor
0.5
727
Tumor
0.5
125
Tumor
0.5
517
Tumor
0.5
737
Tumor
0.5
873
Tumor
0.5
921
Tumor
0.5
535
Tumor
0.4
141
Tumor
0.4
423
Tumor
0.4
977
Tumor
0.4
431
Tumor
0.4
571
Tumor
0.4
127
Tumor
0.4
435
Tumor
0.4
383
Tumor
0.4
967
Tumor
0.4
231
Tumor
0.4
112
Tumor
0.4
267
Tumor
0.3
573
Tumor
0.3
123
Tumor
0.3
447
Tumor
0.3
877
Tumor
0.3
445
Tumor
0.3
545
Tumor
0.2
171
Tumor
0.2
393
Tumor
0.2
1021
Tumor
0.2
467
Tumor
0.2
361
Tumor
0.1
443
Tumor
0.1
311
Tumor
0.0
527
Tumor
0.0
685
Tumor
0.0
861
Tumor
0.0
297
Tumor
0.0
433
Tumor
0.0
925
Tumor
0.0
975
Tumor
-0.1
715
Tumor
-0.1
817
Tumor
-0.1
483
Tumor
-0.1
966
Normal
-0.1
755
Tumor
-0.1
434
Normal
-0.2
451
Tumor
-0.2
963
Tumor
-0.2
741
Tumor
-0.2
978
Normal
-0.3
937
Tumor
-0.3
1015
Tumor
-0.3
314
Normal
-0.3
217
Tumor
-0.3
557
Tumor
-0.3
563
Tumor
-0.3
1045
Tumor
-0.3
917
Tumor
-0.3
257
Tumor
-0.3
271
Tumor
-0.3
227
Tumor
-0.3
553
Tumor
-0.3
221
Tumor
-0.3
185
Tumor
-0.3
697
Tumor
-0.3
415
Tumor
-0.3
187
Tumor
-0.3
147
Tumor
-0.3
1043
Tumor
-0.4
471
Tumor
-0.4
641
Tumor
-0.4
278
Normal
-0.4
851
Tumor
-0.4
312
Normal
-0.4
498
Normal
-0.4
455
Tumor
-0.4
421
Tumor
-0.4
713
Tumor
-0.4
162
Normal
-0.4
135
Tumor
-0.4
513
Tumor
-0.4
195
Tumor
-0.4
284
Normal
-0.4
662
Normal
-0.5
881
Tumor
-0.5
332
Normal
-0.5
913
Tumor
-0.5
857
Tumor
-0.5
358
Normal
-0.5
261
Tumor
-0.5
113
Tumor
-0.5
863
Tumor
-0.5
664
Normal
-0.5
477
Tumor
-0.5
191
Tumor
-0.6
258
Normal
-0.6
468
Normal
-0.6
494
Normal
-0.6
914
Normal
-0.6
955
Tumor
-0.6
137
Tumor
-0.6
365
Tumor
-0.6
956
Normal
-0.6
515
Tumor
-0.6
916
Normal
-0.6
286
Normal
-0.6
648
Normal
-0.6
428
Normal
-0.6
422
Normal
-0.6
976
Normal
-0.6
188
Normal
-0.6
666
Normal
-0.6
745
Tumor
-0.6
444
Normal
-0.6
464
Normal
-0.6
461
Tumor
-0.6
981
Tumor
-0.6
362
Normal
-0.6
785
Tumor
-0.6
223
Tumor
-0.7
958
Normal
-0.7
867
Tumor
-0.7
964
Normal
-0.7
823
Tumor
-0.7
386
Normal
-0.7
262
Normal
-0.7
416
Normal
-0.7
212
Normal
-0.7
716
Normal
-0.7
268
Normal
-0.7
1016
Normal
-0.7
722
Normal
-0.7
488
Normal
-0.7
1014
Normal
-0.7
172
Normal
-0.7
944
Normal
-0.7
534
Normal
-0.7
672
Normal
-0.7
353
Tumor
-0.7
466
Normal
-0.7
615
Tumor
-0.7
356
Normal
-0.7
224
Normal
-0.7
1027
Tumor
-0.7
272
Normal
-0.7
452
Normal
-0.7
366
Normal
-0.7
481
Tumor
-0.7
911
Tumor
-0.7
777
Tumor
-0.7
384
Normal
-0.7
388
Normal
-0.7
298
Normal
-0.7
492
Normal
-0.7
363
Tumor
-0.7
114
Normal
-0.7
524
Normal
-0.7
738
Normal
-0.7
232
Normal
-0.8
526
Normal
-0.8
138
Normal
-0.8
352
Normal
-0.8
128
Normal
-0.8
954
Normal
-0.8
484
Normal
-0.8
714
Normal
-0.8
968
Normal
-0.8
424
Normal
-0.8
514
Normal
-0.8
456
Normal
-0.8
696
Normal
-0.8
516
Normal
-0.8
635
Tumor
-0.8
866
Normal
-0.8
518
Normal
-0.8
952
Normal
-0.8
884
Normal
-0.8
214
Normal
-0.8
564
Normal
-0.8
528
Normal
-0.8
126
Normal
-0.8
426
Normal
-0.8
744
Normal
-0.8
414
Normal
-0.8
364
Normal
-0.8
412
Normal
-0.8
915
Tumor
-0.8
728
Normal
-0.8
1044
Normal
-0.8
574
Normal
-0.9
432
Normal
-0.9
723
Tumor
-0.9
721
Tumor
-0.9
145
Tumor
-0.9
228
Normal
-0.9
546
Normal
-0.9
448
Normal
-0.9
742
Normal
-0.9
918
Normal
-0.9
124
Normal
-0.9
354
Normal
-0.9
984
Normal
-0.9
376
Normal
-0.9
148
Normal
-0.9
396
Normal
-0.9
368
Normal
-0.9
938
Normal
-0.9
136
Normal
-0.9
446
Normal
-0.9
982
Normal
-1.0
568
Normal
-1.0
474
Normal
-1.0
186
Normal
-1.0
1046
Normal
-1.0
558
Normal
-1.0
344
Normal
-1.0
192
Normal
-1.0
392
Normal
-1.0
852
Normal
-1.0
1042
Normal
-1.0
686
Normal
-1.0
698
Normal
-1.0
196
Normal
-1.0
394
Normal
-1.0
328
Normal
-1.0
864
Normal
-1.0
874
Normal
-1.0
538
Normal
-1.0
132
Normal
-1.0
536
Normal
-1.0
572
Normal
-1.0
342
Normal
-1.0
395
Tumor
-1.1
878
Normal
-1.1
436
Normal
-1.1
617
Tumor
-1.1
222
Normal
-1.1
482
Normal
-1.1
1041
Tumor
-1.1
111
Normal
-1.1
142
Normal
-1.1
756
Normal
-1.2
554
Normal
-1.2
926
Normal
-1.2
922
Normal
-1.2
146
Normal
-1.2
868
Normal
-1.2
478
Normal
-1.2
858
Normal
-1.2
862
Normal
-1.2
627
Tumor
-1.3
1032
Normal
-1.3
924
Normal
-1.3
1025
Tumor
-1.3
786
Normal
-1.3
472
Normal
-1.3
327
Tumor
-1.3
746
Normal
-1.3
218
Normal
-1.3
912
Normal
-1.3
1028
Normal
-1.3
882
Normal
-1.4
462
Normal
-1.4
628
Normal
-1.4
1026
Normal
-1.4
778
Normal
-1.4
1022
Normal
-1.4
816
Normal
-1.5
616
Normal
-1.5
818
Normal
-1.6
824
Normal
-1.6
642
Normal
-1.8
618
Normal
-1.8
636
Normal
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
