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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2CB is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
99.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
85.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
84.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
77.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
76.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
76.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
67.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
65.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
64.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
63.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
63.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
62.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
62.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
62.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
58.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
58.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
57.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
57.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
57.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
55.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
55.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
54.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
54.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
53.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
52.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
51.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
50.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
50.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
48.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
47.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
46.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
46.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
46.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
45.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
44.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
43.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
43.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
42.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
42.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
41.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
40.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
39.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
39.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
38.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
38.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
36.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
35.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
34.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
33.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
31.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
30.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
26.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
23.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2CB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.2
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
110.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
90.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
84.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
77.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
76.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
74.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
73.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
72.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
70.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
68.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
63.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
63.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
57.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
57.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
56.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
54.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
54.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
54.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
54.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
53.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
53.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
52.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
52.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
51.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
50.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
49.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
49.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
49.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
48.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
48.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
47.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
47.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
46.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
46.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
46.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
45.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
44.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
43.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
43.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
42.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
41.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
41.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
40.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
40.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
39.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
38.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
37.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
37.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
34.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
34.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
33.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
32.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
30.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
28.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.7
285
Tumor
0.6
1027
Tumor
0.6
745
Tumor
0.5
147
Tumor
0.5
533
Tumor
0.5
921
Tumor
0.4
425
Tumor
0.4
977
Tumor
0.4
851
Tumor
0.4
911
Tumor
0.3
663
Tumor
0.3
221
Tumor
0.3
877
Tumor
0.3
375
Tumor
0.3
451
Tumor
0.3
491
Tumor
0.3
685
Tumor
0.3
635
Tumor
0.3
1043
Tumor
0.3
1013
Tumor
0.3
463
Tumor
0.3
493
Tumor
0.3
746
Normal
0.2
975
Tumor
0.2
497
Tumor
0.2
411
Tumor
0.2
557
Tumor
0.2
277
Tumor
0.2
467
Tumor
0.2
271
Tumor
0.2
112
Tumor
0.2
553
Tumor
0.2
817
Tumor
0.2
1031
Tumor
0.2
1025
Tumor
0.2
257
Tumor
0.2
452
Normal
0.2
777
Tumor
0.2
113
Tumor
0.2
313
Tumor
0.2
515
Tumor
0.2
952
Normal
0.2
213
Tumor
0.2
957
Tumor
0.2
862
Normal
0.2
915
Tumor
0.1
455
Tumor
0.1
617
Tumor
0.1
865
Tumor
0.1
938
Normal
0.1
737
Tumor
0.1
343
Tumor
0.1
111
Normal
0.1
815
Tumor
0.1
342
Normal
0.1
743
Tumor
0.1
192
Normal
0.1
863
Tumor
0.1
738
Normal
0.1
363
Tumor
0.1
715
Tumor
0.1
723
Tumor
0.1
755
Tumor
0.1
968
Normal
0.1
966
Normal
0.1
128
Normal
0.1
456
Normal
0.1
124
Normal
0.1
778
Normal
0.1
816
Normal
0.1
744
Normal
0.1
813
Tumor
0.1
955
Tumor
0.1
1026
Normal
0.1
513
Tumor
0.1
823
Tumor
0.1
385
Tumor
0.1
357
Tumor
0.1
187
Tumor
0.1
283
Tumor
0.1
427
Tumor
0.1
742
Normal
0.1
523
Tumor
0.1
866
Normal
0.1
261
Tumor
0.1
223
Tumor
0.1
191
Tumor
0.1
874
Normal
0.1
852
Normal
0.1
123
Tumor
0.1
661
Tumor
0.1
976
Normal
0.1
881
Tumor
0.1
914
Normal
0.1
917
Tumor
0.1
1021
Tumor
0.1
1015
Tumor
0.1
943
Tumor
0.1
416
Normal
0.1
554
Normal
0.0
466
Normal
0.0
716
Normal
0.0
217
Tumor
0.0
331
Tumor
0.0
431
Tumor
0.0
864
Normal
0.0
534
Normal
0.0
393
Tumor
0.0
1032
Normal
0.0
857
Tumor
0.0
472
Normal
0.0
981
Tumor
0.0
924
Normal
0.0
516
Normal
0.0
464
Normal
0.0
114
Normal
0.0
214
Normal
0.0
647
Tumor
0.0
878
Normal
0.0
135
Tumor
0.0
125
Tumor
0.0
478
Normal
0.0
696
Normal
0.0
358
Normal
0.0
222
Normal
0.0
218
Normal
0.0
146
Normal
0.0
272
Normal
0.0
421
Tumor
0.0
868
Normal
0.0
186
Normal
0.0
433
Tumor
0.0
142
Normal
0.0
525
Tumor
0.0
517
Tumor
0.0
492
Normal
0.0
964
Normal
0.0
958
Normal
0.0
956
Normal
0.0
211
Tumor
0.0
937
Tumor
0.0
824
Normal
0.0
573
Tumor
0.0
913
Tumor
0.0
538
Normal
0.0
686
Normal
0.0
916
Normal
0.0
1028
Normal
0.0
873
Tumor
0.0
311
Tumor
0.0
814
Normal
0.0
954
Normal
0.0
526
Normal
0.0
127
Tumor
0.0
944
Normal
0.0
138
Normal
0.0
258
Normal
0.0
965
Tumor
0.0
1022
Normal
0.0
386
Normal
0.0
327
Tumor
0.0
922
Normal
0.0
196
Normal
0.0
284
Normal
0.0
228
Normal
0.0
728
Normal
0.0
963
Tumor
0.0
882
Normal
0.0
141
Tumor
0.0
786
Normal
0.0
951
Tumor
0.0
1042
Normal
0.0
785
Tumor
0.0
232
Normal
0.0
713
Tumor
0.0
545
Tumor
0.0
477
Tumor
0.0
468
Normal
0.0
195
Tumor
0.0
527
Tumor
0.0
312
Normal
0.0
461
Tumor
0.0
231
Tumor
0.0
536
Normal
0.0
698
Normal
0.0
982
Normal
0.0
756
Normal
0.0
136
Normal
0.0
462
Normal
0.0
983
Tumor
0.0
714
Normal
0.0
861
Tumor
0.0
278
Normal
0.0
262
Normal
0.0
546
Normal
0.0
434
Normal
0.0
422
Normal
0.0
224
Normal
0.0
364
Normal
0.0
132
Normal
0.0
465
Tumor
0.0
671
Tumor
0.0
448
Normal
0.0
445
Tumor
0.0
471
Tumor
0.0
741
Tumor
-0.1
695
Tumor
-0.1
332
Normal
-0.1
722
Normal
-0.1
344
Normal
-0.1
474
Normal
-0.1
884
Normal
-0.1
188
Normal
-0.1
355
Tumor
-0.1
858
Normal
-0.1
518
Normal
-0.1
267
Tumor
-0.1
926
Normal
-0.1
666
Normal
-0.1
426
Normal
-0.1
483
Tumor
-0.1
912
Normal
-0.1
867
Tumor
-0.1
481
Tumor
-0.1
227
Tumor
-0.1
1016
Normal
-0.1
392
Normal
-0.1
1041
Tumor
-0.1
298
Normal
-0.1
528
Normal
-0.1
161
Tumor
-0.1
394
Normal
-0.1
498
Normal
-0.1
396
Normal
-0.1
524
Normal
-0.1
697
Tumor
-0.1
648
Normal
-0.1
148
Normal
-0.1
482
Normal
-0.1
436
Normal
-0.1
488
Normal
-0.1
162
Normal
-0.1
665
Tumor
-0.1
918
Normal
-0.1
494
Normal
-0.1
925
Tumor
-0.1
424
Normal
-0.1
883
Tumor
-0.1
362
Normal
-0.1
414
Normal
-0.1
514
Normal
-0.1
185
Tumor
-0.1
428
Normal
-0.1
415
Tumor
-0.1
328
Normal
-0.1
627
Tumor
-0.1
145
Tumor
-0.1
568
Normal
-0.1
447
Tumor
-0.1
1044
Normal
-0.1
126
Normal
-0.1
923
Tumor
-0.1
268
Normal
-0.1
388
Normal
-0.1
297
Tumor
-0.1
571
Tumor
-0.1
662
Normal
-0.1
413
Tumor
-0.1
473
Tumor
-0.1
171
Tumor
-0.1
641
Tumor
-0.1
484
Normal
-0.1
286
Normal
-0.1
618
Normal
-0.1
356
Normal
-0.1
727
Tumor
-0.1
567
Tumor
-0.1
212
Normal
-0.1
721
Tumor
-0.1
172
Normal
-0.1
435
Tumor
-0.1
487
Tumor
-0.1
574
Normal
-0.2
724
Normal
-0.2
376
Normal
-0.2
1014
Normal
-0.2
314
Normal
-0.2
412
Normal
-0.2
366
Normal
-0.2
446
Normal
-0.2
818
Normal
-0.2
341
Tumor
-0.2
137
Tumor
-0.2
391
Tumor
-0.2
432
Normal
-0.2
664
Normal
-0.2
352
Normal
-0.2
535
Tumor
-0.2
365
Tumor
-0.2
383
Tumor
-0.2
967
Tumor
-0.2
368
Normal
-0.2
444
Normal
-0.2
423
Tumor
-0.2
351
Tumor
-0.2
615
Tumor
-0.2
354
Normal
-0.2
558
Normal
-0.2
984
Normal
-0.3
564
Normal
-0.3
395
Tumor
-0.3
443
Tumor
-0.3
353
Tumor
-0.3
953
Tumor
-0.3
642
Normal
-0.3
537
Tumor
-0.3
1045
Tumor
-0.3
672
Normal
-0.3
628
Normal
-0.3
361
Tumor
-0.3
1046
Normal
-0.3
384
Normal
-0.3
572
Normal
-0.3
563
Tumor
-0.4
616
Normal
-0.4
367
Tumor
-0.4
387
Tumor
-0.4
978
Normal
-0.4
636
Normal
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
