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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.4
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
49.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.9
1013
Tumor
0.8
743
Tumor
0.8
951
Tumor
0.7
685
Tumor
0.7
957
Tumor
0.7
1031
Tumor
0.7
1025
Tumor
0.7
331
Tumor
0.7
965
Tumor
0.6
967
Tumor
0.6
943
Tumor
0.6
313
Tumor
0.6
937
Tumor
0.6
211
Tumor
0.6
877
Tumor
0.6
865
Tumor
0.5
545
Tumor
0.5
1021
Tumor
0.5
1015
Tumor
0.5
983
Tumor
0.4
113
Tumor
0.4
351
Tumor
0.4
411
Tumor
0.4
523
Tumor
0.4
813
Tumor
0.4
431
Tumor
0.4
483
Tumor
0.4
277
Tumor
0.4
917
Tumor
0.4
515
Tumor
0.4
881
Tumor
0.4
777
Tumor
0.3
271
Tumor
0.3
817
Tumor
0.3
963
Tumor
0.3
447
Tumor
0.3
527
Tumor
0.3
413
Tumor
0.3
921
Tumor
0.3
427
Tumor
0.3
721
Tumor
0.3
297
Tumor
0.3
663
Tumor
0.3
375
Tumor
0.3
815
Tumor
0.3
977
Tumor
0.3
497
Tumor
0.3
737
Tumor
0.3
671
Tumor
0.3
227
Tumor
0.3
975
Tumor
0.3
647
Tumor
0.3
123
Tumor
0.3
1027
Tumor
0.3
463
Tumor
0.3
535
Tumor
0.3
385
Tumor
0.3
923
Tumor
0.2
467
Tumor
0.2
461
Tumor
0.2
814
Normal
0.2
517
Tumor
0.2
267
Tumor
0.2
665
Tumor
0.2
395
Tumor
0.2
455
Tumor
0.2
147
Tumor
0.2
713
Tumor
0.2
727
Tumor
0.2
128
Normal
0.2
471
Tumor
0.2
473
Tumor
0.2
357
Tumor
0.2
114
Normal
0.2
425
Tumor
0.2
873
Tumor
0.2
491
Tumor
0.2
915
Tumor
0.2
697
Tumor
0.1
126
Normal
0.1
285
Tumor
0.1
573
Tumor
0.1
137
Tumor
0.1
1014
Normal
0.1
186
Normal
0.1
465
Tumor
0.1
1041
Tumor
0.1
1043
Tumor
0.1
953
Tumor
0.1
686
Normal
0.1
383
Tumor
0.1
851
Tumor
0.1
257
Tumor
0.1
661
Tumor
0.1
161
Tumor
0.1
536
Normal
0.1
435
Tumor
0.1
327
Tumor
0.1
391
Tumor
0.1
213
Tumor
0.1
755
Tumor
0.1
715
Tumor
0.1
343
Tumor
0.1
368
Normal
0.1
984
Normal
0.1
217
Tumor
0.1
533
Tumor
0.1
823
Tumor
0.1
938
Normal
0.1
493
Tumor
0.1
778
Normal
0.1
537
Tumor
0.1
111
Normal
0.1
223
Tumor
0.1
124
Normal
0.1
112
Tumor
0.1
283
Tumor
0.1
724
Normal
0.1
981
Tumor
0.1
367
Tumor
0.0
125
Tumor
0.0
188
Normal
0.0
785
Tumor
0.0
492
Normal
0.0
162
Normal
0.0
135
Tumor
0.0
722
Normal
0.0
445
Tumor
0.0
127
Tumor
0.0
1026
Normal
0.0
1028
Normal
0.0
925
Tumor
0.0
477
Tumor
0.0
498
Normal
0.0
858
Normal
0.0
696
Normal
0.0
648
Normal
0.0
314
Normal
0.0
142
Normal
0.0
716
Normal
0.0
185
Tumor
0.0
365
Tumor
0.0
627
Tumor
0.0
916
Normal
0.0
286
Normal
0.0
924
Normal
0.0
311
Tumor
0.0
488
Normal
0.0
978
Normal
0.0
187
Tumor
0.0
148
Normal
0.0
956
Normal
0.0
746
Normal
0.0
384
Normal
0.0
332
Normal
0.0
695
Tumor
0.0
966
Normal
0.0
376
Normal
0.0
443
Tumor
0.0
393
Tumor
0.0
363
Tumor
0.0
524
Normal
0.0
172
Normal
0.0
361
Tumor
0.0
824
Normal
0.0
212
Normal
0.0
516
Normal
0.0
258
Normal
0.0
195
Tumor
0.0
636
Normal
0.0
434
Normal
0.0
745
Tumor
0.0
262
Normal
0.0
1016
Normal
0.0
362
Normal
0.0
448
Normal
0.0
728
Normal
0.0
268
Normal
0.0
191
Tumor
0.0
664
Normal
0.0
436
Normal
0.0
298
Normal
-0.1
513
Tumor
-0.1
955
Tumor
-0.1
564
Normal
-0.1
481
Tumor
-0.1
714
Normal
-0.1
615
Tumor
-0.1
738
Normal
-0.1
641
Tumor
-0.1
341
Tumor
-0.1
756
Normal
-0.1
553
Tumor
-0.1
478
Normal
-0.1
952
Normal
-0.1
857
Tumor
-0.1
526
Normal
-0.1
874
Normal
-0.1
982
Normal
-0.1
568
Normal
-0.1
394
Normal
-0.1
396
Normal
-0.1
278
Normal
-0.1
563
Tumor
-0.1
355
Tumor
-0.1
145
Tumor
-0.1
366
Normal
-0.1
666
Normal
-0.1
412
Normal
-0.1
1046
Normal
-0.1
228
Normal
-0.1
571
Tumor
-0.1
518
Normal
-0.1
861
Tumor
-0.1
922
Normal
-0.1
433
Tumor
-0.1
867
Tumor
-0.1
913
Tumor
-0.1
554
Normal
-0.1
487
Tumor
-0.1
866
Normal
-0.1
261
Tumor
-0.1
572
Normal
-0.1
1045
Tumor
-0.1
141
Tumor
-0.1
514
Normal
-0.1
567
Tumor
-0.1
388
Normal
-0.1
818
Normal
-0.1
136
Normal
-0.1
863
Tumor
-0.1
386
Normal
-0.1
328
Normal
-0.1
224
Normal
-0.1
786
Normal
-0.1
635
Tumor
-0.1
423
Tumor
-0.1
1042
Normal
-0.1
1044
Normal
-0.1
672
Normal
-0.1
968
Normal
-0.1
816
Normal
-0.1
864
Normal
-0.1
883
Tumor
-0.1
132
Normal
-0.1
698
Normal
-0.1
1032
Normal
-0.1
534
Normal
-0.1
474
Normal
-0.1
525
Tumor
-0.1
538
Normal
-0.1
484
Normal
-0.1
557
Tumor
-0.1
392
Normal
-0.1
944
Normal
-0.1
878
Normal
-0.1
744
Normal
-0.1
284
Normal
-0.1
911
Tumor
-0.1
146
Normal
-0.2
462
Normal
-0.2
138
Normal
-0.2
912
Normal
-0.2
344
Normal
-0.2
742
Normal
-0.2
852
Normal
-0.2
356
Normal
-0.2
364
Normal
-0.2
662
Normal
-0.2
494
Normal
-0.2
272
Normal
-0.2
482
Normal
-0.2
884
Normal
-0.2
976
Normal
-0.2
882
Normal
-0.2
446
Normal
-0.2
444
Normal
-0.2
312
Normal
-0.2
387
Tumor
-0.2
416
Normal
-0.2
192
Normal
-0.2
918
Normal
-0.2
954
Normal
-0.2
432
Normal
-0.2
723
Tumor
-0.2
926
Normal
-0.2
218
Normal
-0.2
862
Normal
-0.2
618
Normal
-0.2
472
Normal
-0.2
958
Normal
-0.2
424
Normal
-0.2
528
Normal
-0.2
353
Tumor
-0.2
358
Normal
-0.2
558
Normal
-0.2
546
Normal
-0.2
196
Normal
-0.2
1022
Normal
-0.2
868
Normal
-0.2
214
Normal
-0.2
421
Tumor
-0.2
422
Normal
-0.2
964
Normal
-0.2
574
Normal
-0.2
451
Tumor
-0.2
221
Tumor
-0.2
171
Tumor
-0.2
914
Normal
-0.2
222
Normal
-0.3
415
Tumor
-0.3
414
Normal
-0.3
617
Tumor
-0.3
232
Normal
-0.3
642
Normal
-0.3
452
Normal
-0.3
628
Normal
-0.3
741
Tumor
-0.3
352
Normal
-0.3
231
Tumor
-0.3
466
Normal
-0.3
456
Normal
-0.3
616
Normal
-0.3
426
Normal
-0.3
428
Normal
-0.3
342
Normal
-0.4
468
Normal
-0.4
464
Normal
-0.4
354
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
