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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH2D4A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
46.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
43.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
40.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
40.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
33.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
24.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH2D4A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
231
Samples
Sample
Description
TPM
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
724
Normal
1.9
451
Tumor
1.5
665
Tumor
1.5
915
Tumor
1.5
131
Tumor
1.3
635
Tumor
1.0
937
Tumor
0.9
975
Tumor
0.9
435
Tumor
0.8
425
Tumor
0.8
911
Tumor
0.8
123
Tumor
0.7
617
Tumor
0.7
977
Tumor
0.7
191
Tumor
0.7
221
Tumor
0.7
925
Tumor
0.6
861
Tumor
0.6
363
Tumor
0.6
951
Tumor
0.6
1031
Tumor
0.6
1027
Tumor
0.5
113
Tumor
0.5
147
Tumor
0.5
1043
Tumor
0.5
1013
Tumor
0.5
1021
Tumor
0.5
916
Normal
0.5
477
Tumor
0.5
745
Tumor
0.5
851
Tumor
0.5
465
Tumor
0.5
171
Tumor
0.5
685
Tumor
0.4
957
Tumor
0.4
746
Normal
0.4
955
Tumor
0.4
391
Tumor
0.4
341
Tumor
0.4
922
Normal
0.4
926
Normal
0.4
824
Normal
0.4
982
Normal
0.4
715
Tumor
0.4
938
Normal
0.4
755
Tumor
0.4
286
Normal
0.4
965
Tumor
0.4
452
Normal
0.3
878
Normal
0.3
666
Normal
0.3
1014
Normal
0.3
463
Tumor
0.3
723
Tumor
0.3
648
Normal
0.3
298
Normal
0.3
1028
Normal
0.3
884
Normal
0.3
912
Normal
0.3
393
Tumor
0.3
663
Tumor
0.3
422
Normal
0.3
786
Normal
0.3
924
Normal
0.3
777
Tumor
0.3
427
Tumor
0.3
1046
Normal
0.3
918
Normal
0.3
978
Normal
0.3
921
Tumor
0.3
616
Normal
0.3
714
Normal
0.3
954
Normal
0.3
222
Normal
0.3
628
Normal
0.3
518
Normal
0.3
956
Normal
0.3
727
Tumor
0.3
662
Normal
0.3
686
Normal
0.3
358
Normal
0.3
257
Tumor
0.3
572
Normal
0.2
664
Normal
0.2
448
Normal
0.2
128
Normal
0.2
981
Tumor
0.2
976
Normal
0.2
661
Tumor
0.2
852
Normal
0.2
472
Normal
0.2
488
Normal
0.2
1022
Normal
0.2
456
Normal
0.2
564
Normal
0.2
1016
Normal
0.2
618
Normal
0.2
738
Normal
0.2
958
Normal
0.2
538
Normal
0.2
966
Normal
0.2
528
Normal
0.2
558
Normal
0.2
462
Normal
0.2
716
Normal
0.2
114
Normal
0.2
484
Normal
0.2
414
Normal
0.2
1042
Normal
0.2
351
Tumor
0.2
313
Tumor
0.2
737
Tumor
0.2
858
Normal
0.2
514
Normal
0.2
862
Normal
0.2
436
Normal
0.2
696
Normal
0.2
778
Normal
0.2
968
Normal
0.2
493
Tumor
0.2
278
Normal
0.2
742
Normal
0.2
698
Normal
0.2
557
Tumor
0.2
478
Normal
0.2
482
Normal
0.2
142
Normal
0.2
362
Normal
0.2
642
Normal
0.2
964
Normal
0.2
426
Normal
0.2
428
Normal
0.2
728
Normal
0.2
497
Tumor
0.2
494
Normal
0.2
466
Normal
0.2
1026
Normal
0.1
186
Normal
0.1
816
Normal
0.1
468
Normal
0.1
445
Tumor
0.1
141
Tumor
0.1
513
Tumor
0.1
137
Tumor
0.1
332
Normal
0.1
914
Normal
0.1
124
Normal
0.1
258
Normal
0.1
136
Normal
0.1
423
Tumor
0.1
392
Normal
0.1
873
Tumor
0.1
534
Normal
0.1
132
Normal
0.1
138
Normal
0.1
874
Normal
0.1
636
Normal
0.1
277
Tumor
0.1
1015
Tumor
0.1
868
Normal
0.1
722
Normal
0.1
574
Normal
0.1
882
Normal
0.1
111
Normal
0.1
756
Normal
0.1
376
Normal
0.1
546
Normal
0.1
356
Normal
0.1
866
Normal
0.1
877
Tumor
0.1
818
Normal
0.1
864
Normal
0.1
232
Normal
0.1
148
Normal
0.1
342
Normal
0.1
526
Normal
0.1
672
Normal
0.1
352
Normal
0.1
126
Normal
0.1
212
Normal
0.1
415
Tumor
0.1
464
Normal
0.0
647
Tumor
0.0
272
Normal
0.0
268
Normal
0.0
1041
Tumor
0.0
394
Normal
0.0
1045
Tumor
0.0
285
Tumor
0.0
228
Normal
0.0
432
Normal
0.0
533
Tumor
0.0
284
Normal
0.0
913
Tumor
0.0
271
Tumor
0.0
444
Normal
0.0
214
Normal
0.0
744
Normal
0.0
1032
Normal
0.0
172
Normal
0.0
952
Normal
0.0
388
Normal
0.0
386
Normal
0.0
364
Normal
0.0
314
Normal
0.0
187
Tumor
0.0
498
Normal
0.0
881
Tumor
0.0
474
Normal
0.0
411
Tumor
0.0
196
Normal
0.0
447
Tumor
0.0
328
Normal
0.0
412
Normal
0.0
424
Normal
0.0
984
Normal
0.0
218
Normal
0.0
554
Normal
0.0
195
Tumor
0.0
433
Tumor
0.0
553
Tumor
0.0
944
Normal
0.0
641
Tumor
0.0
1044
Normal
-0.1
615
Tumor
-0.1
354
Normal
-0.1
517
Tumor
-0.1
368
Normal
-0.1
943
Tumor
-0.1
963
Tumor
-0.1
416
Normal
-0.1
312
Normal
-0.1
446
Normal
-0.1
162
Normal
-0.1
516
Normal
-0.1
384
Normal
-0.1
231
Tumor
-0.1
523
Tumor
-0.1
146
Normal
-0.1
434
Normal
-0.1
563
Tumor
-0.1
524
Normal
-0.1
262
Normal
-0.1
125
Tumor
-0.1
224
Normal
-0.1
366
Normal
-0.1
461
Tumor
-0.1
383
Tumor
-0.1
112
Tumor
-0.1
467
Tumor
-0.1
515
Tumor
-0.1
983
Tumor
-0.2
127
Tumor
-0.2
396
Normal
-0.2
817
Tumor
-0.2
741
Tumor
-0.2
487
Tumor
-0.2
492
Normal
-0.2
344
Normal
-0.2
923
Tumor
-0.2
627
Tumor
-0.2
863
Tumor
-0.2
671
Tumor
-0.2
188
Normal
-0.2
185
Tumor
-0.2
267
Tumor
-0.2
568
Normal
-0.2
814
Normal
-0.2
527
Tumor
-0.2
357
Tumor
-0.2
571
Tumor
-0.3
857
Tumor
-0.3
421
Tumor
-0.3
865
Tumor
-0.3
785
Tumor
-0.3
481
Tumor
-0.3
743
Tumor
-0.3
297
Tumor
-0.3
223
Tumor
-0.3
443
Tumor
-0.3
1025
Tumor
-0.3
431
Tumor
-0.4
545
Tumor
-0.4
455
Tumor
-0.4
331
Tumor
-0.4
917
Tumor
-0.4
161
Tumor
-0.4
537
Tumor
-0.4
473
Tumor
-0.4
217
Tumor
-0.4
192
Normal
-0.5
227
Tumor
-0.5
953
Tumor
-0.5
867
Tumor
-0.5
395
Tumor
-0.5
813
Tumor
-0.5
213
Tumor
-0.5
361
Tumor
-0.5
261
Tumor
-0.5
883
Tumor
-0.5
365
Tumor
-0.5
311
Tumor
-0.5
367
Tumor
-0.6
471
Tumor
-0.6
721
Tumor
-0.6
536
Normal
-0.6
135
Tumor
-0.6
327
Tumor
-0.6
483
Tumor
-0.6
823
Tumor
-0.6
375
Tumor
-0.6
353
Tumor
-0.7
413
Tumor
-0.7
535
Tumor
-0.7
525
Tumor
-0.7
387
Tumor
-0.7
343
Tumor
-0.7
491
Tumor
-0.7
713
Tumor
-0.8
145
Tumor
-0.8
967
Tumor
-0.8
695
Tumor
-0.8
697
Tumor
-0.8
283
Tumor
-0.9
573
Tumor
-0.9
355
Tumor
-0.9
385
Tumor
-1.2
815
Tumor
-1.2
211
Tumor
-1.4
567
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
