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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
4.5
nTPM
FANTOM5:
1.5
Scaled Tags Per Million
Pig:
0.0
nTPM
Mouse:
0.4
nTPM
WHITE MATTER - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.5
Sample id
Sample description
nTPM
Angular gyrus (white matter) nTPM: 3.2
1920
Male, age 76, both hemispheres
3.2
Anterior funiculus (white matter) nTPM: 3.2
2819
Male, age 47, both hemispheres
3.5
2818
Female, age 79, both hemispheres
3.4
2734
Male, age 80, both hemispheres
3.0
2193
Male, age 75, both hemispheres
2.9
Area striata (white matter) nTPM: 2.7
2258
Female, age 91, left hemisphere
2.7
Cerebellar white matter nTPM: 4.0
1837
Male, age 76, left hemisphere
6.4
2174
Male, age 61, right hemisphere
5.9
2773
Female, age 85, right hemisphere
3.6
1864
Male, age 80, left hemisphere
3.4
1931
Female, age 91, left hemisphere
2.5
2105
Male, age 74, right hemisphere
2.3
Corpus callosum, genu (white matter) nTPM: 4.5
1885
Female, age 94, left hemisphere
7.0
1934
Male, age 61, right hemisphere
6.9
1887
Male, age 76, left hemisphere
6.2
1849
Female, age 91, right hemisphere
3.0
1886
Female, age 67, right hemisphere
1.8
2771
Male, age 75, left hemisphere
1.8
Corpus callosum, splenium (white matter) nTPM: 3.5
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
