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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCALD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
40.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCALD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.9
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
617
Tumor
1.4
285
Tumor
1.1
865
Tumor
1.1
983
Tumor
1.1
967
Tumor
1.0
813
Tumor
0.8
192
Normal
0.7
277
Tumor
0.6
571
Tumor
0.5
743
Tumor
0.5
463
Tumor
0.5
147
Tumor
0.5
267
Tumor
0.5
351
Tumor
0.4
343
Tumor
0.4
344
Normal
0.4
545
Tumor
0.4
135
Tumor
0.4
516
Normal
0.4
126
Normal
0.4
697
Tumor
0.4
196
Normal
0.4
426
Normal
0.4
124
Normal
0.4
814
Normal
0.4
517
Tumor
0.4
568
Normal
0.4
574
Normal
0.4
332
Normal
0.4
666
Normal
0.4
195
Tumor
0.4
662
Normal
0.3
342
Normal
0.3
636
Normal
0.3
664
Normal
0.3
361
Tumor
0.3
818
Normal
0.3
186
Normal
0.3
642
Normal
0.3
111
Normal
0.3
713
Tumor
0.3
1044
Normal
0.3
778
Normal
0.3
497
Tumor
0.3
527
Tumor
0.3
278
Normal
0.3
618
Normal
0.3
672
Normal
0.3
628
Normal
0.3
127
Tumor
0.3
298
Normal
0.3
816
Normal
0.3
866
Normal
0.3
616
Normal
0.3
698
Normal
0.3
227
Tumor
0.3
984
Normal
0.3
384
Normal
0.3
146
Normal
0.3
218
Normal
0.3
367
Tumor
0.3
514
Normal
0.3
924
Normal
0.3
824
Normal
0.3
414
Normal
0.3
376
Normal
0.3
188
Normal
0.3
722
Normal
0.2
148
Normal
0.2
232
Normal
0.2
944
Normal
0.2
131
Tumor
0.2
386
Normal
0.2
756
Normal
0.2
314
Normal
0.2
352
Normal
0.2
528
Normal
0.2
436
Normal
0.2
564
Normal
0.2
852
Normal
0.2
518
Normal
0.2
554
Normal
0.2
114
Normal
0.2
952
Normal
0.2
341
Tumor
0.2
214
Normal
0.2
648
Normal
0.2
523
Tumor
0.2
297
Tumor
0.2
448
Normal
0.2
1014
Normal
0.2
958
Normal
0.2
412
Normal
0.2
421
Tumor
0.2
362
Normal
0.2
744
Normal
0.2
912
Normal
0.2
484
Normal
0.2
272
Normal
0.2
1046
Normal
0.2
786
Normal
0.2
742
Normal
0.2
723
Tumor
0.2
737
Tumor
0.2
444
Normal
0.2
456
Normal
0.2
268
Normal
0.2
1025
Tumor
0.2
136
Normal
0.2
223
Tumor
0.2
162
Normal
0.2
917
Tumor
0.2
172
Normal
0.2
185
Tumor
0.2
161
Tumor
0.2
222
Normal
0.2
882
Normal
0.2
714
Normal
0.2
721
Tumor
0.2
364
Normal
0.2
258
Normal
0.2
982
Normal
0.2
864
Normal
0.2
873
Tumor
0.2
356
Normal
0.2
262
Normal
0.2
466
Normal
0.1
976
Normal
0.1
572
Normal
0.1
534
Normal
0.1
132
Normal
0.1
368
Normal
0.1
878
Normal
0.1
432
Normal
0.1
354
Normal
0.1
113
Tumor
0.1
366
Normal
0.1
494
Normal
0.1
431
Tumor
0.1
393
Tumor
0.1
392
Normal
0.1
488
Normal
0.1
1032
Normal
0.1
443
Tumor
0.1
858
Normal
0.1
874
Normal
0.1
1022
Normal
0.1
446
Normal
0.1
138
Normal
0.1
546
Normal
0.1
415
Tumor
0.1
128
Normal
0.1
968
Normal
0.1
738
Normal
0.1
862
Normal
0.1
716
Normal
0.1
526
Normal
0.1
746
Normal
0.1
536
Normal
0.1
641
Tumor
0.1
394
Normal
0.1
468
Normal
0.1
558
Normal
0.1
963
Tumor
0.1
1028
Normal
0.1
434
Normal
0.1
695
Tumor
0.1
525
Tumor
0.1
914
Normal
0.1
884
Normal
0.1
635
Tumor
0.1
728
Normal
0.1
956
Normal
0.1
727
Tumor
0.1
312
Normal
0.0
422
Normal
0.0
978
Normal
0.0
396
Normal
0.0
358
Normal
0.0
284
Normal
0.0
228
Normal
0.0
286
Normal
0.0
966
Normal
0.0
686
Normal
0.0
328
Normal
0.0
696
Normal
0.0
922
Normal
0.0
965
Tumor
0.0
327
Tumor
0.0
661
Tumor
0.0
141
Tumor
0.0
212
Normal
0.0
462
Normal
0.0
224
Normal
0.0
1016
Normal
0.0
424
Normal
0.0
142
Normal
0.0
563
Tumor
0.0
918
Normal
0.0
447
Tumor
0.0
452
Normal
0.0
863
Tumor
0.0
331
Tumor
0.0
964
Normal
0.0
868
Normal
0.0
311
Tumor
0.0
472
Normal
0.0
1026
Normal
0.0
423
Tumor
0.0
413
Tumor
0.0
1042
Normal
0.0
257
Tumor
0.0
482
Normal
-0.1
388
Normal
-0.1
395
Tumor
-0.1
943
Tumor
-0.1
357
Tumor
-0.1
777
Tumor
-0.1
1013
Tumor
-0.1
464
Normal
-0.1
857
Tumor
-0.1
483
Tumor
-0.1
217
Tumor
-0.1
363
Tumor
-0.1
428
Normal
-0.1
925
Tumor
-0.1
538
Normal
-0.1
191
Tumor
-0.1
823
Tumor
-0.1
473
Tumor
-0.1
923
Tumor
-0.1
498
Normal
-0.1
445
Tumor
-0.1
745
Tumor
-0.1
137
Tumor
-0.1
877
Tumor
-0.1
1043
Tumor
-0.1
383
Tumor
-0.1
916
Normal
-0.1
474
Normal
-0.1
926
Normal
-0.1
416
Normal
-0.1
515
Tumor
-0.1
938
Normal
-0.1
663
Tumor
-0.1
955
Tumor
-0.1
954
Normal
-0.1
125
Tumor
-0.1
487
Tumor
-0.1
724
Normal
-0.1
353
Tumor
-0.2
478
Normal
-0.2
365
Tumor
-0.2
524
Normal
-0.2
533
Tumor
-0.2
537
Tumor
-0.2
435
Tumor
-0.2
513
Tumor
-0.2
715
Tumor
-0.2
213
Tumor
-0.2
921
Tumor
-0.2
493
Tumor
-0.2
211
Tumor
-0.2
553
Tumor
-0.2
785
Tumor
-0.2
271
Tumor
-0.2
535
Tumor
-0.2
355
Tumor
-0.2
145
Tumor
-0.2
427
Tumor
-0.2
665
Tumor
-0.3
1031
Tumor
-0.3
433
Tumor
-0.3
461
Tumor
-0.3
815
Tumor
-0.3
615
Tumor
-0.3
465
Tumor
-0.3
187
Tumor
-0.3
492
Normal
-0.3
467
Tumor
-0.3
957
Tumor
-0.3
387
Tumor
-0.3
221
Tumor
-0.3
411
Tumor
-0.4
313
Tumor
-0.4
851
Tumor
-0.4
283
Tumor
-0.4
112
Tumor
-0.4
567
Tumor
-0.4
881
Tumor
-0.4
755
Tumor
-0.5
671
Tumor
-0.5
231
Tumor
-0.5
491
Tumor
-0.5
627
Tumor
-0.5
451
Tumor
-0.5
977
Tumor
-0.5
455
Tumor
-0.5
913
Tumor
-0.5
1045
Tumor
-0.6
261
Tumor
-0.6
981
Tumor
-0.6
481
Tumor
-0.6
975
Tumor
-0.6
425
Tumor
-0.6
471
Tumor
-0.6
1015
Tumor
-0.6
883
Tumor
-0.6
375
Tumor
-0.6
647
Tumor
-0.6
573
Tumor
-0.7
915
Tumor
-0.7
817
Tumor
-0.7
123
Tumor
-0.7
557
Tumor
-0.7
477
Tumor
-0.7
171
Tumor
-0.7
385
Tumor
-0.7
741
Tumor
-0.7
1021
Tumor
-0.7
391
Tumor
-0.8
861
Tumor
-0.8
867
Tumor
-0.8
911
Tumor
-0.8
953
Tumor
-0.9
951
Tumor
-0.9
937
Tumor
-1.0
685
Tumor
-1.1
1027
Tumor
-1.2
1041
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
