We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDRG1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1185.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1083.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
874.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
565.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
521.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
515.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
434.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
338.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
312.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
311.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
276.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
261.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
245.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
244.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
238.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
234.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
216.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
208.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
206.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
203.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
198.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
196.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
194.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
180.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
173.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
168.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
165.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
162.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
157.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
157.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
144.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
143.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
132.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
131.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
130.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
121.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
117.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
117.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
116.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
108.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
107.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
106.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
105.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
104.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
103.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
101.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
99.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
99.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
94.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
94.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
94.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
93.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
92.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
92.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
90.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
89.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
88.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
87.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
85.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
85.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
84.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
84.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
84.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
82.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
81.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
79.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
78.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
76.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
76.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
76.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
76.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
75.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
73.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
73.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
73.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
73.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
72.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
72.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
71.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
71.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
71.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
70.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
70.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
69.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
68.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
65.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
65.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
63.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
63.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
62.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
61.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
61.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
60.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
59.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
58.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
57.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
57.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
57.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
55.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
55.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
55.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
55.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
55.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
54.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
54.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
53.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
53.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
52.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
52.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
52.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
51.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
51.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
50.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
50.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
50.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
48.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
47.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
47.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
46.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
46.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
45.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
42.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
41.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
40.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
38.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
37.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
36.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
36.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
35.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
35.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
34.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
30.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
30.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDRG1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
90.8
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
1124.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
718.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
624.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
615.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
610.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
557.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
376.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
372.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
369.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
343.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
315.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
307.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
299.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
274.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
274.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
268.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
261.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
260.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
249.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
246.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
238.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
234.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
232.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
216.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
211.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
210.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
204.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
198.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
189.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
181.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
175.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
171.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
166.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
161.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
159.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
156.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
136.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
132.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
131.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
128.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
124.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
123.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
119.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
118.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
116.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
113.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
113.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
112.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
112.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
110.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
108.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
106.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
104.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
103.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
101.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
101.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
99.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
98.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
97.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
96.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
95.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
93.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
92.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
91.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
90.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
90.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
89.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
89.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
86.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
85.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
85.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
82.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
80.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
79.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
75.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
73.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
73.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
73.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
71.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
71.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
68.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
67.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
67.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
66.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
65.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
63.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
63.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
63.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
62.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
61.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
60.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
60.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
59.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
59.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
59.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
59.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
58.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
58.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
57.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
55.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
54.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
54.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
53.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
53.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
52.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
52.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
52.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
50.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
47.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
47.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
47.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
46.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
45.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
44.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
43.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
43.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
42.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
42.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
42.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
41.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
39.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
34.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
663
Tumor
2.4
375
Tumor
1.9
313
Tumor
1.6
567
Tumor
1.6
951
Tumor
1.6
125
Tumor
1.4
257
Tumor
1.4
367
Tumor
1.2
537
Tumor
1.2
877
Tumor
1.1
641
Tumor
1.1
331
Tumor
1.0
967
Tumor
1.0
161
Tumor
0.9
865
Tumor
0.9
171
Tumor
0.8
341
Tumor
0.8
393
Tumor
0.8
571
Tumor
0.8
493
Tumor
0.8
1013
Tumor
0.7
387
Tumor
0.7
435
Tumor
0.7
385
Tumor
0.6
285
Tumor
0.6
363
Tumor
0.6
851
Tumor
0.6
573
Tumor
0.6
227
Tumor
0.6
817
Tumor
0.5
483
Tumor
0.5
715
Tumor
0.5
685
Tumor
0.5
147
Tumor
0.5
411
Tumor
0.5
135
Tumor
0.5
185
Tumor
0.5
1027
Tumor
0.5
921
Tumor
0.4
671
Tumor
0.4
463
Tumor
0.4
413
Tumor
0.4
1025
Tumor
0.4
231
Tumor
0.3
745
Tumor
0.3
727
Tumor
0.3
953
Tumor
0.3
461
Tumor
0.3
277
Tumor
0.3
427
Tumor
0.3
517
Tumor
0.2
983
Tumor
0.2
357
Tumor
0.2
283
Tumor
0.2
113
Tumor
0.2
963
Tumor
0.2
391
Tumor
0.1
617
Tumor
0.1
957
Tumor
0.1
314
Normal
0.1
221
Tumor
0.1
1031
Tumor
0.1
195
Tumor
0.1
883
Tumor
0.1
873
Tumor
0.1
361
Tumor
0.1
217
Tumor
0.1
187
Tumor
0.1
743
Tumor
0.0
311
Tumor
0.0
525
Tumor
0.0
332
Normal
0.0
267
Tumor
0.0
192
Normal
0.0
376
Normal
0.0
186
Normal
0.0
223
Tumor
0.0
491
Tumor
0.0
672
Normal
0.0
664
Normal
0.0
515
Tumor
0.0
557
Tumor
0.0
863
Tumor
-0.1
298
Normal
-0.1
127
Tumor
-0.1
368
Normal
-0.1
917
Tumor
-0.1
362
Normal
-0.1
131
Tumor
-0.1
342
Normal
-0.1
112
Tumor
-0.1
666
Normal
-0.1
191
Tumor
-0.2
162
Normal
-0.2
344
Normal
-0.2
258
Normal
-0.2
278
Normal
-0.2
923
Tumor
-0.2
172
Normal
-0.2
443
Tumor
-0.2
648
Normal
-0.2
1021
Tumor
-0.2
977
Tumor
-0.2
965
Tumor
-0.2
354
Normal
-0.2
662
Normal
-0.2
1045
Tumor
-0.2
384
Normal
-0.2
436
Normal
-0.2
394
Normal
-0.2
366
Normal
-0.2
533
Tumor
-0.2
396
Normal
-0.2
343
Tumor
-0.2
312
Normal
-0.2
423
Tumor
-0.2
428
Normal
-0.2
446
Normal
-0.3
148
Normal
-0.3
568
Normal
-0.3
433
Tumor
-0.3
695
Tumor
-0.3
141
Tumor
-0.3
1026
Normal
-0.3
618
Normal
-0.3
523
Tumor
-0.3
1015
Tumor
-0.3
388
Normal
-0.3
222
Normal
-0.3
616
Normal
-0.3
635
Tumor
-0.3
383
Tumor
-0.3
642
Normal
-0.3
465
Tumor
-0.3
636
Normal
-0.3
196
Normal
-0.3
467
Tumor
-0.3
574
Normal
-0.3
232
Normal
-0.3
445
Tumor
-0.3
355
Tumor
-0.3
358
Normal
-0.3
386
Normal
-0.3
884
Normal
-0.3
415
Tumor
-0.3
425
Tumor
-0.3
392
Normal
-0.3
426
Normal
-0.3
126
Normal
-0.3
188
Normal
-0.3
451
Tumor
-0.3
858
Normal
-0.3
497
Tumor
-0.3
535
Tumor
-0.4
123
Tumor
-0.4
484
Normal
-0.4
975
Tumor
-0.4
628
Normal
-0.4
414
Normal
-0.4
464
Normal
-0.4
1043
Tumor
-0.4
424
Normal
-0.4
563
Tumor
-0.4
488
Normal
-0.4
145
Tumor
-0.4
214
Normal
-0.4
818
Normal
-0.4
111
Normal
-0.4
553
Tumor
-0.4
824
Normal
-0.4
452
Normal
-0.4
218
Normal
-0.4
1046
Normal
-0.4
128
Normal
-0.4
124
Normal
-0.4
881
Tumor
-0.4
395
Tumor
-0.4
471
Tumor
-0.4
615
Tumor
-0.4
1016
Normal
-0.4
944
Normal
-0.4
297
Tumor
-0.4
146
Normal
-0.4
271
Tumor
-0.4
572
Normal
-0.4
365
Tumor
-0.4
422
Normal
-0.4
912
Normal
-0.4
534
Normal
-0.4
982
Normal
-0.4
456
Normal
-0.5
813
Tumor
-0.5
462
Normal
-0.5
742
Normal
-0.5
353
Tumor
-0.5
952
Normal
-0.5
1032
Normal
-0.5
466
Normal
-0.5
352
Normal
-0.5
938
Normal
-0.5
262
Normal
-0.5
661
Tumor
-0.5
716
Normal
-0.5
922
Normal
-0.5
964
Normal
-0.5
915
Tumor
-0.5
914
Normal
-0.5
434
Normal
-0.5
364
Normal
-0.5
527
Tumor
-0.5
786
Normal
-0.5
714
Normal
-0.5
564
Normal
-0.5
432
Normal
-0.5
868
Normal
-0.5
272
Normal
-0.5
114
Normal
-0.5
627
Tumor
-0.5
494
Normal
-0.5
546
Normal
-0.5
513
Tumor
-0.5
823
Tumor
-0.6
665
Tumor
-0.6
132
Normal
-0.6
744
Normal
-0.6
444
Normal
-0.6
421
Tumor
-0.6
746
Normal
-0.6
722
Normal
-0.6
472
Normal
-0.6
882
Normal
-0.6
696
Normal
-0.6
498
Normal
-0.6
286
Normal
-0.6
1014
Normal
-0.6
558
Normal
-0.6
926
Normal
-0.6
351
Tumor
-0.6
713
Tumor
-0.6
815
Tumor
-0.6
514
Normal
-0.6
697
Tumor
-0.6
328
Normal
-0.6
862
Normal
-0.6
723
Tumor
-0.6
356
Normal
-0.6
516
Normal
-0.6
261
Tumor
-0.6
918
Normal
-0.6
867
Tumor
-0.6
468
Normal
-0.6
686
Normal
-0.6
943
Tumor
-0.6
956
Normal
-0.6
416
Normal
-0.6
142
Normal
-0.6
857
Tumor
-0.6
741
Tumor
-0.6
698
Normal
-0.6
924
Normal
-0.6
268
Normal
-0.6
874
Normal
-0.6
228
Normal
-0.6
412
Normal
-0.6
224
Normal
-0.6
737
Tumor
-0.6
487
Tumor
-0.6
138
Normal
-0.6
482
Normal
-0.6
756
Normal
-0.7
481
Tumor
-0.7
554
Normal
-0.7
538
Normal
-0.7
1042
Normal
-0.7
213
Tumor
-0.7
524
Normal
-0.7
866
Normal
-0.7
852
Normal
-0.7
1022
Normal
-0.7
528
Normal
-0.7
911
Tumor
-0.7
492
Normal
-0.7
431
Tumor
-0.7
212
Normal
-0.7
526
Normal
-0.7
647
Tumor
-0.7
474
Normal
-0.7
976
Normal
-0.7
137
Tumor
-0.7
878
Normal
-0.7
284
Normal
-0.7
448
Normal
-0.7
958
Normal
-0.7
1044
Normal
-0.8
518
Normal
-0.8
136
Normal
-0.8
864
Normal
-0.8
968
Normal
-0.8
1028
Normal
-0.8
954
Normal
-0.8
738
Normal
-0.8
984
Normal
-0.8
966
Normal
-0.8
785
Tumor
-0.8
327
Tumor
-0.8
861
Tumor
-0.8
816
Normal
-0.8
473
Tumor
-0.8
981
Tumor
-0.8
916
Normal
-0.8
455
Tumor
-0.9
536
Normal
-0.9
978
Normal
-0.9
478
Normal
-0.9
728
Normal
-0.9
721
Tumor
-0.9
755
Tumor
-0.9
545
Tumor
-1.0
211
Tumor
-1.0
778
Normal
-1.0
724
Normal
-1.0
814
Normal
-1.1
937
Tumor
-1.1
477
Tumor
-1.1
955
Tumor
-1.1
777
Tumor
-1.2
1041
Tumor
-1.2
913
Tumor
-1.2
925
Tumor
-1.3
447
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
