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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZFAND1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
45.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
39.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
38.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZFAND1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
81.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
59.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
58.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
58.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
55.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
54.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
51.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
50.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
49.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
48.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
46.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
41.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
41.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
32.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
715
Tumor
1.2
185
Tumor
1.0
285
Tumor
0.9
231
Tumor
0.9
967
Tumor
0.9
865
Tumor
0.9
483
Tumor
0.9
965
Tumor
0.8
697
Tumor
0.8
365
Tumor
0.8
497
Tumor
0.8
917
Tumor
0.8
957
Tumor
0.8
745
Tumor
0.8
685
Tumor
0.8
123
Tumor
0.8
937
Tumor
0.8
223
Tumor
0.7
353
Tumor
0.7
473
Tumor
0.6
983
Tumor
0.6
553
Tumor
0.6
267
Tumor
0.6
395
Tumor
0.6
113
Tumor
0.6
545
Tumor
0.6
915
Tumor
0.5
375
Tumor
0.5
963
Tumor
0.5
1041
Tumor
0.5
493
Tumor
0.5
557
Tumor
0.5
517
Tumor
0.5
331
Tumor
0.5
147
Tumor
0.4
112
Tumor
0.4
257
Tumor
0.4
641
Tumor
0.4
443
Tumor
0.4
327
Tumor
0.4
1025
Tumor
0.4
211
Tumor
0.4
925
Tumor
0.4
467
Tumor
0.4
311
Tumor
0.4
785
Tumor
0.3
525
Tumor
0.3
1021
Tumor
0.3
743
Tumor
0.3
445
Tumor
0.3
277
Tumor
0.3
385
Tumor
0.3
351
Tumor
0.3
527
Tumor
0.3
746
Normal
0.3
536
Normal
0.3
1031
Tumor
0.3
127
Tumor
0.2
451
Tumor
0.2
516
Normal
0.2
877
Tumor
0.2
823
Tumor
0.2
465
Tumor
0.2
975
Tumor
0.2
383
Tumor
0.2
461
Tumor
0.2
1042
Normal
0.2
537
Tumor
0.2
881
Tumor
0.2
755
Tumor
0.2
535
Tumor
0.2
187
Tumor
0.2
355
Tumor
0.2
393
Tumor
0.2
851
Tumor
0.2
367
Tumor
0.1
737
Tumor
0.1
498
Normal
0.1
514
Normal
0.1
462
Normal
0.1
916
Normal
0.1
271
Tumor
0.1
1022
Normal
0.1
384
Normal
0.1
477
Tumor
0.1
526
Normal
0.1
538
Normal
0.1
951
Tumor
0.1
472
Normal
0.1
361
Tumor
0.1
481
Tumor
0.1
415
Tumor
0.1
471
Tumor
0.1
861
Tumor
0.1
524
Normal
0.1
635
Tumor
0.1
786
Normal
0.1
913
Tumor
0.1
125
Tumor
0.1
135
Tumor
0.1
124
Normal
0.0
815
Tumor
0.0
463
Tumor
0.0
131
Tumor
0.0
431
Tumor
0.0
362
Normal
0.0
413
Tumor
0.0
363
Tumor
0.0
433
Tumor
0.0
742
Normal
0.0
357
Tumor
0.0
883
Tumor
0.0
533
Tumor
0.0
341
Tumor
0.0
491
Tumor
0.0
482
Normal
0.0
232
Normal
0.0
258
Normal
0.0
952
Normal
0.0
478
Normal
0.0
918
Normal
0.0
546
Normal
0.0
1026
Normal
0.0
366
Normal
0.0
262
Normal
0.0
982
Normal
0.0
126
Normal
0.0
283
Tumor
0.0
387
Tumor
0.0
474
Normal
0.0
446
Normal
0.0
343
Tumor
0.0
423
Tumor
0.0
744
Normal
-0.1
571
Tumor
-0.1
981
Tumor
-0.1
448
Normal
-0.1
824
Normal
-0.1
434
Normal
-0.1
728
Normal
-0.1
1016
Normal
-0.1
224
Normal
-0.1
268
Normal
-0.1
574
Normal
-0.1
1028
Normal
-0.1
938
Normal
-0.1
867
Tumor
-0.1
976
Normal
-0.1
261
Tumor
-0.1
1032
Normal
-0.1
513
Tumor
-0.1
923
Tumor
-0.1
272
Normal
-0.1
617
Tumor
-0.1
978
Normal
-0.1
312
Normal
-0.1
518
Normal
-0.1
954
Normal
-0.1
756
Normal
-0.1
436
Normal
-0.1
964
Normal
-0.1
968
Normal
-0.1
922
Normal
-0.1
984
Normal
-0.1
427
Tumor
-0.1
873
Tumor
-0.1
447
Tumor
-0.1
642
Normal
-0.1
724
Normal
-0.1
356
Normal
-0.1
816
Normal
-0.1
142
Normal
-0.1
412
Normal
-0.1
411
Tumor
-0.1
966
Normal
-0.1
698
Normal
-0.1
492
Normal
-0.1
297
Tumor
-0.1
145
Tumor
-0.1
464
Normal
-0.1
432
Normal
-0.1
188
Normal
-0.1
148
Normal
-0.2
882
Normal
-0.2
738
Normal
-0.2
858
Normal
-0.2
857
Tumor
-0.2
364
Normal
-0.2
554
Normal
-0.2
528
Normal
-0.2
818
Normal
-0.2
468
Normal
-0.2
195
Tumor
-0.2
884
Normal
-0.2
921
Tumor
-0.2
494
Normal
-0.2
111
Normal
-0.2
455
Tumor
-0.2
958
Normal
-0.2
421
Tumor
-0.2
874
Normal
-0.2
141
Tumor
-0.2
568
Normal
-0.2
564
Normal
-0.2
695
Tumor
-0.2
777
Tumor
-0.2
696
Normal
-0.2
944
Normal
-0.2
1046
Normal
-0.2
186
Normal
-0.2
716
Normal
-0.2
665
Tumor
-0.2
1027
Tumor
-0.2
1045
Tumor
-0.2
864
Normal
-0.2
741
Tumor
-0.2
953
Tumor
-0.2
328
Normal
-0.2
435
Tumor
-0.2
114
Normal
-0.2
926
Normal
-0.2
416
Normal
-0.2
278
Normal
-0.2
444
Normal
-0.2
778
Normal
-0.2
376
Normal
-0.2
618
Normal
-0.2
852
Normal
-0.2
722
Normal
-0.2
1014
Normal
-0.3
428
Normal
-0.3
558
Normal
-0.3
912
Normal
-0.3
452
Normal
-0.3
714
Normal
-0.3
572
Normal
-0.3
615
Tumor
-0.3
914
Normal
-0.3
723
Tumor
-0.3
924
Normal
-0.3
191
Tumor
-0.3
523
Tumor
-0.3
212
Normal
-0.3
414
Normal
-0.3
484
Normal
-0.3
228
Normal
-0.3
132
Normal
-0.3
146
Normal
-0.3
298
Normal
-0.3
713
Tumor
-0.3
466
Normal
-0.3
663
Tumor
-0.3
332
Normal
-0.3
172
Normal
-0.3
128
Normal
-0.3
386
Normal
-0.3
977
Tumor
-0.3
627
Tumor
-0.3
456
Normal
-0.3
426
Normal
-0.3
171
Tumor
-0.3
352
Normal
-0.4
424
Normal
-0.4
394
Normal
-0.4
358
Normal
-0.4
284
Normal
-0.4
1044
Normal
-0.4
354
Normal
-0.4
286
Normal
-0.4
192
Normal
-0.4
943
Tumor
-0.4
422
Normal
-0.4
534
Normal
-0.4
956
Normal
-0.4
425
Tumor
-0.4
137
Tumor
-0.4
1013
Tumor
-0.4
866
Normal
-0.4
515
Tumor
-0.4
487
Tumor
-0.4
817
Tumor
-0.4
911
Tumor
-0.4
955
Tumor
-0.4
813
Tumor
-0.4
161
Tumor
-0.4
368
Normal
-0.4
686
Normal
-0.4
628
Normal
-0.4
488
Normal
-0.4
136
Normal
-0.4
313
Tumor
-0.4
162
Normal
-0.4
878
Normal
-0.4
862
Normal
-0.5
1015
Tumor
-0.5
721
Tumor
-0.5
344
Normal
-0.5
221
Tumor
-0.5
392
Normal
-0.5
868
Normal
-0.5
138
Normal
-0.5
616
Normal
-0.5
672
Normal
-0.5
671
Tumor
-0.5
222
Normal
-0.5
196
Normal
-0.5
636
Normal
-0.5
1043
Tumor
-0.6
342
Normal
-0.6
396
Normal
-0.6
727
Tumor
-0.6
388
Normal
-0.6
214
Normal
-0.6
814
Normal
-0.6
217
Tumor
-0.7
391
Tumor
-0.7
662
Normal
-0.7
661
Tumor
-0.7
314
Normal
-0.7
567
Tumor
-0.8
647
Tumor
-0.8
648
Normal
-0.8
664
Normal
-0.8
666
Normal
-0.8
218
Normal
-0.8
213
Tumor
-0.8
863
Tumor
-0.9
227
Tumor
-1.0
563
Tumor
-1.2
573
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
