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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF3J is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
89.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
65.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
62.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
61.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
56.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
55.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
55.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
54.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
50.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
50.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
49.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
48.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
48.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
43.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
41.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
40.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
37.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
37.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
34.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
33.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
29.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF3J is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.4
Number of samples
231
Samples
Sample
Description
TPM
DO48682
0 years, female, NA, stage:3, dead, 120 days
96.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
53.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
50.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
45.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
44.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
41.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
41.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
38.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
36.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
36.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
28.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
785
Tumor
0.8
1025
Tumor
0.7
951
Tumor
0.7
1021
Tumor
0.7
1027
Tumor
0.7
627
Tumor
0.6
537
Tumor
0.6
777
Tumor
0.6
387
Tumor
0.6
473
Tumor
0.6
535
Tumor
0.6
815
Tumor
0.6
331
Tumor
0.6
557
Tumor
0.5
1013
Tumor
0.5
227
Tumor
0.5
851
Tumor
0.5
523
Tumor
0.5
615
Tumor
0.5
553
Tumor
0.5
527
Tumor
0.5
965
Tumor
0.5
513
Tumor
0.5
327
Tumor
0.4
367
Tumor
0.4
567
Tumor
0.4
357
Tumor
0.4
983
Tumor
0.4
957
Tumor
0.4
483
Tumor
0.4
517
Tumor
0.4
697
Tumor
0.4
515
Tumor
0.4
443
Tumor
0.4
925
Tumor
0.4
431
Tumor
0.3
285
Tumor
0.3
445
Tumor
0.3
755
Tumor
0.3
571
Tumor
0.3
883
Tumor
0.3
195
Tumor
0.3
361
Tumor
0.3
953
Tumor
0.3
435
Tumor
0.3
915
Tumor
0.3
635
Tumor
0.3
413
Tumor
0.3
861
Tumor
0.3
391
Tumor
0.3
977
Tumor
0.2
471
Tumor
0.2
411
Tumor
0.2
171
Tumor
0.2
881
Tumor
0.2
867
Tumor
0.2
477
Tumor
0.2
923
Tumor
0.2
131
Tumor
0.2
955
Tumor
0.2
355
Tumor
0.2
393
Tumor
0.2
1015
Tumor
0.2
461
Tumor
0.2
1045
Tumor
0.2
493
Tumor
0.2
217
Tumor
0.2
421
Tumor
0.2
533
Tumor
0.2
563
Tumor
0.2
617
Tumor
0.2
981
Tumor
0.2
937
Tumor
0.2
123
Tumor
0.2
363
Tumor
0.2
385
Tumor
0.1
536
Normal
0.1
873
Tumor
0.1
375
Tumor
0.1
573
Tumor
0.1
231
Tumor
0.1
455
Tumor
0.1
685
Tumor
0.1
137
Tumor
0.1
365
Tumor
0.1
1031
Tumor
0.1
966
Normal
0.1
487
Tumor
0.1
451
Tumor
0.1
484
Normal
0.1
514
Normal
0.1
353
Tumor
0.1
743
Tumor
0.1
944
Normal
0.1
967
Tumor
0.1
963
Tumor
0.1
1014
Normal
0.1
665
Tumor
0.1
448
Normal
0.1
518
Normal
0.1
545
Tumor
0.1
914
Normal
0.1
223
Tumor
0.1
415
Tumor
0.1
715
Tumor
0.1
113
Tumor
0.1
823
Tumor
0.1
1043
Tumor
0.1
526
Normal
0.1
975
Tumor
0.1
952
Normal
0.1
912
Normal
0.1
911
Tumor
0.1
978
Normal
0.0
492
Normal
0.0
554
Normal
0.0
661
Tumor
0.0
727
Tumor
0.0
286
Normal
0.0
436
Normal
0.0
366
Normal
0.0
481
Tumor
0.0
1028
Normal
0.0
641
Tumor
0.0
713
Tumor
0.0
817
Tumor
0.0
746
Normal
0.0
741
Tumor
0.0
135
Tumor
0.0
161
Tumor
0.0
516
Normal
0.0
864
Normal
0.0
211
Tumor
0.0
1041
Tumor
0.0
958
Normal
0.0
446
Normal
0.0
696
Normal
0.0
721
Tumor
0.0
283
Tumor
0.0
416
Normal
0.0
386
Normal
0.0
228
Normal
0.0
524
Normal
0.0
964
Normal
0.0
714
Normal
0.0
528
Normal
0.0
745
Tumor
0.0
452
Normal
0.0
525
Tumor
0.0
737
Tumor
0.0
284
Normal
0.0
362
Normal
0.0
857
Tumor
0.0
913
Tumor
0.0
968
Normal
0.0
922
Normal
0.0
628
Normal
0.0
474
Normal
0.0
212
Normal
0.0
127
Tumor
0.0
277
Tumor
0.0
534
Normal
0.0
467
Tumor
0.0
368
Normal
0.0
1026
Normal
0.0
564
Normal
0.0
916
Normal
0.0
982
Normal
0.0
447
Tumor
0.0
1016
Normal
0.0
568
Normal
0.0
938
Normal
0.0
351
Tumor
0.0
728
Normal
0.0
444
Normal
0.0
432
Normal
0.0
394
Normal
0.0
433
Tumor
0.0
546
Normal
-0.1
1022
Normal
-0.1
412
Normal
-0.1
376
Normal
-0.1
1044
Normal
-0.1
148
Normal
-0.1
313
Tumor
-0.1
695
Tumor
-0.1
388
Normal
-0.1
172
Normal
-0.1
642
Normal
-0.1
778
Normal
-0.1
364
Normal
-0.1
868
Normal
-0.1
423
Tumor
-0.1
918
Normal
-0.1
686
Normal
-0.1
924
Normal
-0.1
956
Normal
-0.1
926
Normal
-0.1
647
Tumor
-0.1
341
Tumor
-0.1
866
Normal
-0.1
213
Tumor
-0.1
884
Normal
-0.1
738
Normal
-0.1
723
Tumor
-0.1
456
Normal
-0.1
261
Tumor
-0.1
187
Tumor
-0.1
257
Tumor
-0.1
328
Normal
-0.1
422
Normal
-0.1
865
Tumor
-0.1
742
Normal
-0.1
488
Normal
-0.1
1046
Normal
-0.1
191
Tumor
-0.1
921
Tumor
-0.1
862
Normal
-0.1
824
Normal
-0.1
271
Tumor
-0.1
648
Normal
-0.1
196
Normal
-0.1
497
Tumor
-0.1
426
Normal
-0.1
395
Tumor
-0.1
943
Tumor
-0.1
816
Normal
-0.1
162
Normal
-0.1
498
Normal
-0.1
221
Tumor
-0.1
356
Normal
-0.1
636
Normal
-0.1
1042
Normal
-0.1
671
Tumor
-0.1
383
Tumor
-0.1
222
Normal
-0.1
538
Normal
-0.1
663
Tumor
-0.1
616
Normal
-0.1
618
Normal
-0.1
954
Normal
-0.1
218
Normal
-0.2
434
Normal
-0.2
722
Normal
-0.2
852
Normal
-0.2
185
Tumor
-0.2
558
Normal
-0.2
494
Normal
-0.2
396
Normal
-0.2
874
Normal
-0.2
472
Normal
-0.2
666
Normal
-0.2
141
Tumor
-0.2
976
Normal
-0.2
572
Normal
-0.2
878
Normal
-0.2
1032
Normal
-0.2
813
Tumor
-0.2
278
Normal
-0.2
984
Normal
-0.2
882
Normal
-0.2
192
Normal
-0.2
466
Normal
-0.2
384
Normal
-0.2
786
Normal
-0.2
214
Normal
-0.2
312
Normal
-0.2
858
Normal
-0.2
414
Normal
-0.2
128
Normal
-0.2
716
Normal
-0.2
468
Normal
-0.2
756
Normal
-0.2
698
Normal
-0.2
424
Normal
-0.2
724
Normal
-0.2
311
Tumor
-0.2
224
Normal
-0.2
392
Normal
-0.2
462
Normal
-0.2
814
Normal
-0.2
132
Normal
-0.2
111
Normal
-0.2
465
Tumor
-0.2
574
Normal
-0.2
464
Normal
-0.2
267
Tumor
-0.2
482
Normal
-0.2
664
Normal
-0.3
298
Normal
-0.3
478
Normal
-0.3
662
Normal
-0.3
427
Tumor
-0.3
258
Normal
-0.3
232
Normal
-0.3
428
Normal
-0.3
142
Normal
-0.3
136
Normal
-0.3
114
Normal
-0.3
186
Normal
-0.3
124
Normal
-0.3
314
Normal
-0.3
917
Tumor
-0.3
262
Normal
-0.3
863
Tumor
-0.3
297
Tumor
-0.3
138
Normal
-0.3
332
Normal
-0.3
188
Normal
-0.3
877
Tumor
-0.4
344
Normal
-0.4
818
Normal
-0.4
744
Normal
-0.4
147
Tumor
-0.4
112
Tumor
-0.4
425
Tumor
-0.4
342
Normal
-0.4
268
Normal
-0.4
463
Tumor
-0.4
126
Normal
-0.4
491
Tumor
-0.4
272
Normal
-0.5
672
Normal
-0.5
146
Normal
-0.5
358
Normal
-0.5
145
Tumor
-0.6
343
Tumor
-0.6
352
Normal
-0.6
354
Normal
-0.6
125
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
