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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HOMER2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
138.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
132.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
105.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
105.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
90.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
88.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
86.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
82.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
79.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
77.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
73.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
72.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
64.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
63.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
63.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
59.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
59.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
58.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
58.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
57.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
57.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
55.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
55.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
54.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
53.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
53.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
52.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
51.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
51.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
49.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
48.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
44.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
44.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
43.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
42.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
42.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
42.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
41.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
40.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
40.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
39.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
39.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
37.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
35.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
35.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
34.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
32.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
27.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HOMER2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.4
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
120.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
90.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
87.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
82.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
67.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
64.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
55.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
54.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
49.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
48.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
46.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
45.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
44.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
44.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
41.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
39.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
35.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
34.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
34.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.0
863
Tumor
0.9
431
Tumor
0.9
954
Normal
0.7
635
Tumor
0.7
487
Tumor
0.7
471
Tumor
0.7
867
Tumor
0.7
1027
Tumor
0.7
818
Normal
0.6
1046
Normal
0.6
938
Normal
0.6
484
Normal
0.6
1041
Tumor
0.6
944
Normal
0.6
742
Normal
0.6
924
Normal
0.5
824
Normal
0.5
461
Tumor
0.5
636
Normal
0.5
483
Tumor
0.5
723
Tumor
0.5
482
Normal
0.5
137
Tumor
0.5
964
Normal
0.5
481
Tumor
0.5
445
Tumor
0.5
953
Tumor
0.5
744
Normal
0.5
488
Normal
0.5
698
Normal
0.5
616
Normal
0.5
462
Normal
0.5
858
Normal
0.5
515
Tumor
0.5
415
Tumor
0.5
186
Normal
0.4
955
Tumor
0.4
878
Normal
0.4
915
Tumor
0.4
952
Normal
0.4
618
Normal
0.4
112
Tumor
0.4
428
Normal
0.4
464
Normal
0.4
142
Normal
0.4
1016
Normal
0.4
852
Normal
0.4
982
Normal
0.4
862
Normal
0.4
1014
Normal
0.4
617
Tumor
0.4
882
Normal
0.4
958
Normal
0.4
228
Normal
0.4
984
Normal
0.3
714
Normal
0.3
356
Normal
0.3
564
Normal
0.3
728
Normal
0.3
722
Normal
0.3
472
Normal
0.3
448
Normal
0.3
647
Tumor
0.3
518
Normal
0.3
912
Normal
0.3
926
Normal
0.3
478
Normal
0.3
447
Tumor
0.3
1022
Normal
0.3
132
Normal
0.3
128
Normal
0.3
466
Normal
0.3
696
Normal
0.3
956
Normal
0.3
162
Normal
0.3
918
Normal
0.3
268
Normal
0.3
1026
Normal
0.3
376
Normal
0.3
672
Normal
0.3
738
Normal
0.3
538
Normal
0.3
396
Normal
0.3
148
Normal
0.3
568
Normal
0.3
284
Normal
0.3
298
Normal
0.3
746
Normal
0.3
777
Tumor
0.3
191
Tumor
0.3
196
Normal
0.3
868
Normal
0.3
864
Normal
0.3
517
Tumor
0.3
925
Tumor
0.3
494
Normal
0.3
648
Normal
0.3
366
Normal
0.3
922
Normal
0.3
785
Tumor
0.3
756
Normal
0.3
1032
Normal
0.3
412
Normal
0.3
1042
Normal
0.3
361
Tumor
0.3
976
Normal
0.3
388
Normal
0.3
368
Normal
0.3
716
Normal
0.3
574
Normal
0.3
422
Normal
0.2
572
Normal
0.2
546
Normal
0.2
786
Normal
0.2
451
Tumor
0.2
498
Normal
0.2
664
Normal
0.2
131
Tumor
0.2
916
Normal
0.2
816
Normal
0.2
392
Normal
0.2
416
Normal
0.2
423
Tumor
0.2
857
Tumor
0.2
866
Normal
0.2
534
Normal
0.2
978
Normal
0.2
686
Normal
0.2
642
Normal
0.2
195
Tumor
0.2
558
Normal
0.2
516
Normal
0.2
328
Normal
0.2
884
Normal
0.2
224
Normal
0.2
443
Tumor
0.2
666
Normal
0.2
111
Normal
0.2
394
Normal
0.2
873
Tumor
0.2
172
Normal
0.2
456
Normal
0.2
136
Normal
0.2
514
Normal
0.2
147
Tumor
0.2
968
Normal
0.2
492
Normal
0.2
161
Tumor
0.2
755
Tumor
0.2
737
Tumor
0.2
297
Tumor
0.2
364
Normal
0.2
286
Normal
0.2
473
Tumor
0.2
424
Normal
0.2
474
Normal
0.2
628
Normal
0.2
778
Normal
0.2
436
Normal
0.1
662
Normal
0.1
426
Normal
0.1
432
Normal
0.1
745
Tumor
0.1
523
Tumor
0.1
557
Tumor
0.1
384
Normal
0.1
874
Normal
0.1
1044
Normal
0.1
357
Tumor
0.1
414
Normal
0.1
127
Tumor
0.1
433
Tumor
0.1
528
Normal
0.1
966
Normal
0.1
921
Tumor
0.1
342
Normal
0.1
446
Normal
0.1
362
Normal
0.1
393
Tumor
0.1
468
Normal
0.1
452
Normal
0.1
232
Normal
0.1
222
Normal
0.1
332
Normal
0.1
386
Normal
0.1
272
Normal
0.1
563
Tumor
0.1
911
Tumor
0.1
341
Tumor
0.1
963
Tumor
0.0
695
Tumor
0.0
146
Normal
0.0
981
Tumor
0.0
914
Normal
0.0
554
Normal
0.0
314
Normal
0.0
513
Tumor
0.0
526
Normal
0.0
267
Tumor
0.0
524
Normal
0.0
188
Normal
0.0
327
Tumor
0.0
427
Tumor
0.0
138
Normal
0.0
477
Tumor
0.0
861
Tumor
0.0
214
Normal
0.0
271
Tumor
0.0
354
Normal
0.0
365
Tumor
0.0
881
Tumor
0.0
212
Normal
0.0
1015
Tumor
0.0
258
Normal
0.0
352
Normal
0.0
114
Normal
0.0
465
Tumor
0.0
192
Normal
0.0
1013
Tumor
0.0
627
Tumor
0.0
126
Normal
0.0
124
Normal
0.0
141
Tumor
0.0
1043
Tumor
0.0
1028
Normal
0.0
344
Normal
0.0
185
Tumor
0.0
135
Tumor
-0.1
615
Tumor
-0.1
385
Tumor
-0.1
278
Normal
-0.1
1045
Tumor
-0.1
218
Normal
-0.1
444
Normal
-0.1
262
Normal
-0.1
421
Tumor
-0.1
375
Tumor
-0.1
358
Normal
-0.1
536
Normal
-0.1
227
Tumor
-0.1
665
Tumor
-0.1
823
Tumor
-0.1
977
Tumor
-0.1
721
Tumor
-0.1
1025
Tumor
-0.1
434
Normal
-0.1
741
Tumor
-0.1
217
Tumor
-0.2
261
Tumor
-0.2
545
Tumor
-0.2
383
Tumor
-0.2
663
Tumor
-0.2
425
Tumor
-0.2
312
Normal
-0.2
353
Tumor
-0.2
571
Tumor
-0.2
493
Tumor
-0.2
957
Tumor
-0.2
813
Tumor
-0.2
355
Tumor
-0.2
814
Normal
-0.2
913
Tumor
-0.2
221
Tumor
-0.2
187
Tumor
-0.3
1031
Tumor
-0.3
975
Tumor
-0.3
851
Tumor
-0.3
527
Tumor
-0.3
877
Tumor
-0.3
283
Tumor
-0.3
671
Tumor
-0.3
311
Tumor
-0.4
917
Tumor
-0.4
715
Tumor
-0.4
411
Tumor
-0.4
1021
Tumor
-0.4
641
Tumor
-0.4
213
Tumor
-0.4
313
Tumor
-0.4
257
Tumor
-0.4
727
Tumor
-0.4
713
Tumor
-0.4
367
Tumor
-0.4
661
Tumor
-0.4
937
Tumor
-0.4
685
Tumor
-0.5
145
Tumor
-0.5
491
Tumor
-0.5
943
Tumor
-0.5
231
Tumor
-0.5
525
Tumor
-0.5
391
Tumor
-0.5
573
Tumor
-0.5
467
Tumor
-0.5
817
Tumor
-0.5
567
Tumor
-0.5
455
Tumor
-0.5
435
Tumor
-0.5
171
Tumor
-0.5
923
Tumor
-0.5
553
Tumor
-0.6
223
Tumor
-0.6
343
Tumor
-0.6
125
Tumor
-0.6
883
Tumor
-0.7
395
Tumor
-0.7
697
Tumor
-0.7
113
Tumor
-0.7
123
Tumor
-0.8
983
Tumor
-0.8
363
Tumor
-0.8
865
Tumor
-0.8
965
Tumor
-0.8
331
Tumor
-0.8
387
Tumor
-0.9
815
Tumor
-0.9
743
Tumor
-1.0
285
Tumor
-1.0
277
Tumor
-1.1
211
Tumor
-1.1
413
Tumor
-1.1
537
Tumor
-1.1
497
Tumor
-1.2
463
Tumor
-1.3
351
Tumor
-1.3
535
Tumor
-1.4
724
Normal
-1.4
967
Tumor
-1.7
951
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
