HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		184.058
RNA expressioni
Consensus:10.4 nTPM
HPA Brain:47.5 nTPM
GTEx:10.4 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:28.9 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040134
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079014
Hippocampal formation mean intensity 184.058
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 101.412
Molecular layer of the dentate gyrus 102.975
Granular dentate gyrus 84.549
CA1 - oriens layer 139.764
CA1 - pyramidal layer 81.850
CA1 - radiatum layer 143.691
CA2 - oriens layer 134.377
CA2 - pyramidal layer 73.105
CA2 - radiatum layer 121.778
CA3 - oriens layer 75.653
CA3 - pyramidal layer 59.149
CA3 - radiatum layer 82.810
Stratum lucidum 57.713
Lacunosum moleculare 86.245
Subiculum 82.789

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 47.5
Sample id Sample description nTPM
Hippocampus
nTPM: 39.4
2621 Female, age 67, right hemisphere 44.9
1911 Female, age 85, right hemisphere 44.0
2148 Female, age 91, left hemisphere 41.0
1898 Male, age 80, left hemisphere 37.5
2529 Female, age 94, left hemisphere 35.1
1855 Male, age 76, left hemisphere 33.8
Dentate gyrus
nTPM: 36.4
1927 Female, age 91, both hemispheres 55.3
2530 Female, age 94, left hemisphere 39.5
2010 Male, age 76, both hemispheres 38.4
2528 Male, age 74, both hemispheres 30.4
2531 Female, age 67, both hemispheres 27.5
2246 Female, age 85, both hemispheres 27.1
Entorhinal gyrus
nTPM: 31.7
2613 Female, age 94, left hemisphere 41.5
1938 Female, age 85, left hemisphere 39.0
2686 Male, age 75, right hemisphere 28.7
1787 Male, age 76, left hemisphere 27.9
2764 Male, age 80, right hemisphere 27.7
2117 Female, age 91, right hemisphere 25.0
Hippocampus, CA1
nTPM: 42.2
2749 Male, age 80, left hemisphere 83.0
1873 Female, age 85, both hemispheres 41.4
2527 Male, age 74, both hemispheres 38.4
2082 Female, age 91, right hemisphere 28.2
2045 Male, age 76, both hemispheres 20.0
Hippocampus, CA2
nTPM: 42.8
1963 Male, age 80, left hemisphere 82.5
1892 Male, age 76, both hemispheres 42.8
2249 Male, age 74, both hemispheres 38.6
2437 Female, age 94, left hemisphere 33.8
2113 Female, age 91, right hemisphere 31.2
1940 Female, age 85, left hemisphere 27.8
Hippocampus, CA3
nTPM: 47.5
2137 Male, age 80, left hemisphere 79.0
2436 Male, age 74, both hemispheres 76.2
2861 Female, age 67, both hemispheres 39.3
1867 Male, age 76, both hemispheres 32.0
2620 Female, age 94, left hemisphere 30.8
1891 Female, age 85, both hemispheres 27.6
Parahippocampal cortex
nTPM: 31.4
2245 Female, age 91, both hemispheres 41.7
2622 Female, age 67, right hemisphere 35.4
1990 Female, age 91, right hemisphere 32.2
2692 Male, age 74, both hemispheres 31.8
2250 Female, age 67, right hemisphere 31.4
2693 Female, age 94, both hemispheres 29.2
1850 Male, age 80, both hemispheres 28.7
2018 Male, age 76, both hemispheres 28.3
2532 Female, age 72, left hemisphere 27.7
1933 Female, age 85, both hemispheres 27.2
Perirhinal gyrus
nTPM: 28.0
1847 Female, age 91, left hemisphere 32.5
1841 Female, age 85, right hemisphere 29.4
2848 Male, age 76, right hemisphere 27.4
2521 Female, age 94, right hemisphere 25.7
1794 Male, age 80, right hemisphere 25.2
Subiculum
nTPM: 29.4
1901 Male, age 80, both hemispheres 40.8
2619 Male, age 74, both hemispheres 28.9
1977 Female, age 85, both hemispheres 28.5
2042 Male, age 76, both hemispheres 27.3
2729 Female, age 91, right hemisphere 26.7
2438 Female, age 94, left hemisphere 24.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 10.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.4
Samples: 197

Max nTPM: 24.8
Min nTPM: 1.9
Std nTPM: 4.9
Median nTPM: 9.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 24.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 24.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 23.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 23.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 23.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 23.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 23.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 21.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 21.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 21.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 21.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.0
FF:10169-103B7 60 years, female 24.9
FF:10153-102I9 76 years, female 23.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 20.7
Pig sample Sample description nTPM
Subiculum
nTPM: 16.8
Samples: 4

Max nTPM: 20.0
Min nTPM: 13.7
Sample A Female 20.0
Sample B Female 16.7
Sample C Male 16.7
Sample D Male 13.7
Dorsal hippocampus
nTPM: 10.6
Samples: 4

Max nTPM: 14.9
Min nTPM: 4.8
Sample A Female 12.7
Sample B Female 9.9
Sample C Male 14.9
Sample D Male 4.8
Entorhinal cortex
nTPM: 20.7
Samples: 4

Max nTPM: 23.0
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 23.0
Sample C Male 21.8
Sample D Male 20.1
Ventral hippocampus
nTPM: 10.8
Samples: 4

Max nTPM: 13.1
Min nTPM: 8.0
Sample A Female 9.0
Sample B Female 8.0
Sample C Male 13.1
Sample D Male 12.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 28.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.9
Samples: 4

Max nTPM: 33.1
Min nTPM: 25.5
Sample A Male 28.1
Sample B Male 25.5
Sample C Female 29.0
Sample D Female 33.1
Hippocampal formation
nTPM: 26.4
Samples: 4

Max nTPM: 30.9
Min nTPM: 23.7
Sample A Male 30.9
Sample B Male 23.7
Sample C Female 25.2
Sample D Female 25.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
68546167 Antisense, RP_050120_02_B02, Mouse strain C57BL/6J (56 days, male) 7.4
71015814 Antisense, RP_050725_02_H10, Mouse strain C57BL/6J (56 days, male) 4.0
74822584 Antisense, RP_051206_02_B04, Mouse strain C57BL/6J (56 days, male) 0.5

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