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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD276 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
85.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
76.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
61.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
52.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
47.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
45.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
42.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
39.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
38.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
26.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD276 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
75.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
60.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
59.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
57.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
56.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
45.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
42.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
36.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.2
517
Tumor
0.9
285
Tumor
0.8
283
Tumor
0.8
367
Tumor
0.7
331
Tumor
0.7
135
Tumor
0.7
868
Normal
0.6
877
Tumor
0.6
557
Tumor
0.6
424
Normal
0.6
413
Tumor
0.6
965
Tumor
0.6
387
Tumor
0.6
923
Tumor
0.5
363
Tumor
0.5
358
Normal
0.5
713
Tumor
0.5
851
Tumor
0.5
131
Tumor
0.5
447
Tumor
0.5
983
Tumor
0.5
132
Normal
0.5
297
Tumor
0.5
571
Tumor
0.5
343
Tumor
0.5
938
Normal
0.4
1031
Tumor
0.4
311
Tumor
0.4
558
Normal
0.4
535
Tumor
0.4
967
Tumor
0.4
227
Tumor
0.4
394
Normal
0.4
568
Normal
0.4
545
Tumor
0.4
874
Normal
0.4
617
Tumor
0.4
824
Normal
0.4
1042
Normal
0.3
385
Tumor
0.3
138
Normal
0.3
386
Normal
0.3
918
Normal
0.3
314
Normal
0.3
186
Normal
0.3
786
Normal
0.3
881
Tumor
0.3
391
Tumor
0.3
136
Normal
0.3
422
Normal
0.3
414
Normal
0.3
232
Normal
0.3
214
Normal
0.3
355
Tumor
0.3
128
Normal
0.3
393
Tumor
0.3
514
Normal
0.3
445
Tumor
0.3
277
Tumor
0.3
1046
Normal
0.3
715
Tumor
0.3
446
Normal
0.3
361
Tumor
0.2
572
Normal
0.2
963
Tumor
0.2
474
Normal
0.2
1044
Normal
0.2
1043
Tumor
0.2
332
Normal
0.2
864
Normal
0.2
696
Normal
0.2
146
Normal
0.2
142
Normal
0.2
817
Tumor
0.2
187
Tumor
0.2
463
Tumor
0.2
574
Normal
0.2
813
Tumor
0.2
412
Normal
0.2
671
Tumor
0.2
564
Normal
0.2
882
Normal
0.2
223
Tumor
0.2
162
Normal
0.2
111
Normal
0.2
258
Normal
0.2
698
Normal
0.2
388
Normal
0.2
697
Tumor
0.2
852
Normal
0.2
366
Normal
0.2
975
Tumor
0.1
956
Normal
0.1
746
Normal
0.1
351
Tumor
0.1
737
Tumor
0.1
392
Normal
0.1
212
Normal
0.1
648
Normal
0.1
344
Normal
0.1
1032
Normal
0.1
964
Normal
0.1
271
Tumor
0.1
867
Tumor
0.1
298
Normal
0.1
914
Normal
0.1
982
Normal
0.1
396
Normal
0.1
421
Tumor
0.1
228
Normal
0.1
257
Tumor
0.1
148
Normal
0.1
278
Normal
0.1
863
Tumor
0.1
878
Normal
0.1
268
Normal
0.1
968
Normal
0.1
376
Normal
0.1
1026
Normal
0.1
778
Normal
0.1
814
Normal
0.1
433
Tumor
0.1
546
Normal
0.1
492
Normal
0.1
818
Normal
0.1
815
Tumor
0.1
727
Tumor
0.1
125
Tumor
0.1
976
Normal
0.1
554
Normal
0.1
728
Normal
0.1
145
Tumor
0.1
364
Normal
0.0
428
Normal
0.0
917
Tumor
0.0
354
Normal
0.0
924
Normal
0.0
188
Normal
0.0
342
Normal
0.0
722
Normal
0.0
785
Tumor
0.0
114
Normal
0.0
312
Normal
0.0
966
Normal
0.0
448
Normal
0.0
464
Normal
0.0
862
Normal
0.0
466
Normal
0.0
411
Tumor
0.0
468
Normal
0.0
384
Normal
0.0
662
Normal
0.0
884
Normal
0.0
284
Normal
0.0
137
Tumor
0.0
661
Tumor
0.0
952
Normal
0.0
113
Tumor
0.0
185
Tumor
0.0
455
Tumor
0.0
467
Tumor
0.0
426
Normal
0.0
1022
Normal
0.0
471
Tumor
0.0
922
Normal
0.0
494
Normal
0.0
618
Normal
0.0
357
Tumor
0.0
432
Normal
0.0
224
Normal
0.0
444
Normal
0.0
738
Normal
0.0
196
Normal
0.0
352
Normal
0.0
365
Tumor
0.0
415
Tumor
0.0
912
Normal
0.0
488
Normal
0.0
272
Normal
0.0
222
Normal
0.0
534
Normal
0.0
944
Normal
0.0
362
Normal
0.0
743
Tumor
0.0
416
Normal
0.0
525
Tumor
-0.1
518
Normal
-0.1
462
Normal
-0.1
756
Normal
-0.1
1014
Normal
-0.1
286
Normal
-0.1
461
Tumor
-0.1
563
Tumor
-0.1
191
Tumor
-0.1
124
Normal
-0.1
742
Normal
-0.1
943
Tumor
-0.1
958
Normal
-0.1
744
Normal
-0.1
141
Tumor
-0.1
368
Normal
-0.1
573
Tumor
-0.1
567
Tumor
-0.1
435
Tumor
-0.1
955
Tumor
-0.1
434
Normal
-0.1
195
Tumor
-0.1
537
Tumor
-0.1
425
Tumor
-0.1
218
Normal
-0.1
745
Tumor
-0.1
436
Normal
-0.1
431
Tumor
-0.1
452
Normal
-0.1
1025
Tumor
-0.1
695
Tumor
-0.1
714
Normal
-0.1
491
Tumor
-0.1
147
Tumor
-0.1
112
Tumor
-0.1
478
Normal
-0.1
1016
Normal
-0.1
375
Tumor
-0.1
516
Normal
-0.1
192
Normal
-0.1
984
Normal
-0.2
978
Normal
-0.2
451
Tumor
-0.2
472
Normal
-0.2
536
Normal
-0.2
171
Tumor
-0.2
921
Tumor
-0.2
553
Tumor
-0.2
395
Tumor
-0.2
723
Tumor
-0.2
217
Tumor
-0.2
716
Normal
-0.2
267
Tumor
-0.2
161
Tumor
-0.2
262
Normal
-0.2
873
Tumor
-0.2
672
Normal
-0.2
356
Normal
-0.2
493
Tumor
-0.2
213
Tumor
-0.2
341
Tumor
-0.2
498
Normal
-0.2
957
Tumor
-0.2
1028
Normal
-0.2
954
Normal
-0.2
926
Normal
-0.2
647
Tumor
-0.2
482
Normal
-0.2
456
Normal
-0.2
172
Normal
-0.2
211
Tumor
-0.2
383
Tumor
-0.2
883
Tumor
-0.2
497
Tumor
-0.2
527
Tumor
-0.2
857
Tumor
-0.2
443
Tumor
-0.2
858
Normal
-0.2
261
Tumor
-0.2
328
Normal
-0.2
481
Tumor
-0.3
816
Normal
-0.3
861
Tumor
-0.3
538
Normal
-0.3
427
Tumor
-0.3
937
Tumor
-0.3
665
Tumor
-0.3
664
Normal
-0.3
981
Tumor
-0.3
523
Tumor
-0.3
484
Normal
-0.3
866
Normal
-0.3
721
Tumor
-0.3
666
Normal
-0.3
477
Tumor
-0.3
823
Tumor
-0.3
636
Normal
-0.3
526
Normal
-0.3
686
Normal
-0.3
1013
Tumor
-0.3
127
Tumor
-0.3
483
Tumor
-0.3
231
Tumor
-0.3
221
Tumor
-0.3
353
Tumor
-0.3
916
Normal
-0.3
1045
Tumor
-0.3
524
Normal
-0.3
533
Tumor
-0.3
915
Tumor
-0.4
123
Tumor
-0.4
628
Normal
-0.4
515
Tumor
-0.4
1015
Tumor
-0.4
953
Tumor
-0.4
642
Normal
-0.4
616
Normal
-0.4
528
Normal
-0.4
423
Tumor
-0.5
313
Tumor
-0.5
951
Tumor
-0.5
1027
Tumor
-0.5
1041
Tumor
-0.5
911
Tumor
-0.5
913
Tumor
-0.5
663
Tumor
-0.5
724
Normal
-0.5
1021
Tumor
-0.5
977
Tumor
-0.5
755
Tumor
-0.5
627
Tumor
-0.6
487
Tumor
-0.6
777
Tumor
-0.6
925
Tumor
-0.6
641
Tumor
-0.6
513
Tumor
-0.7
327
Tumor
-0.7
685
Tumor
-0.7
741
Tumor
-0.8
615
Tumor
-0.8
465
Tumor
-0.9
635
Tumor
-0.9
865
Tumor
-1.0
126
Normal
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
