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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDIPT is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.057
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
42%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
59%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
69.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
288.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
189.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
155.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
153.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
151.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
151.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
144.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
143.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
142.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
142.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
139.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
138.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
136.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
134.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
132.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
131.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
131.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
128.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
126.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
125.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
124.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
124.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
123.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
118.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
118.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
116.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
116.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
116.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
115.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
114.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
112.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
112.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
112.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
110.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
109.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
108.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
106.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
105.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
105.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
104.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
104.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
104.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
103.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
103.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
103.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
101.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
101.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
100.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
99.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
97.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
97.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
97.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
97.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
96.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
95.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
95.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
94.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
93.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
93.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
92.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
92.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
92.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
91.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
91.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
91.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
91.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
91.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
91.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
90.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
90.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
90.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
90.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
90.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
89.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
89.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
88.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
88.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
86.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
86.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
86.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
85.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
85.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
85.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
84.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
84.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
84.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
84.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
83.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
83.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
83.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
83.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
83.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
82.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
82.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
82.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
81.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
80.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
80.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
80.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
80.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
80.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
79.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
79.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
78.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
78.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
78.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
78.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
77.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
77.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
76.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
76.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
75.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
75.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
75.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
75.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
75.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
75.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
75.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
75.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
74.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
74.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
74.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
74.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
74.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
73.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
73.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
73.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
73.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
73.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
73.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
73.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
73.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
73.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
72.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
72.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
72.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
72.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
72.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
72.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
71.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
71.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
71.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
71.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
71.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
70.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
70.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
69.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
69.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
69.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
69.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
69.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
69.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
69.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
68.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
68.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
68.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
68.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
68.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
68.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
67.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
67.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
67.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
67.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
67.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
67.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
67.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
67.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
67.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
67.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
66.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
66.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
66.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
66.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
66.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
65.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
65.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
65.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
65.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
65.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
65.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
64.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
64.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
64.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
64.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
64.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
64.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
63.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
63.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
62.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
62.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
62.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
62.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
62.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
62.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
61.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
61.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
61.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
61.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
60.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
60.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
60.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
59.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
59.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
58.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
58.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
58.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
58.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
58.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
58.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
58.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
58.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
57.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
57.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
57.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
57.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
57.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
57.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
57.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
56.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
56.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
56.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
56.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
56.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
55.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
55.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
55.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
55.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
55.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
54.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
54.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
54.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
54.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
54.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
53.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
53.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
53.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
53.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
53.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
52.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
52.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
52.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
52.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
52.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
52.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
52.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
51.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
51.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
51.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
50.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
50.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
50.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
50.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
50.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
50.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
49.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
48.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
48.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
48.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
48.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
47.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
47.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
47.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
47.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
46.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
46.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
46.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
45.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
44.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
44.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
44.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
44.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
43.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
42.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
41.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
41.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
40.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
40.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
40.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
40.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
39.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
39.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
39.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
39.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
38.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
38.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
38.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
36.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
36.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
31.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
29.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDIPT is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.023
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
64%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.4
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
161.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
145.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
115.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
104.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
92.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
90.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
89.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
88.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
86.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
84.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
84.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
83.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
82.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
81.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
81.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
80.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
80.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
80.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
79.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
79.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
77.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
77.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
75.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
73.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
72.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
72.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
70.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
70.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
68.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
68.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
66.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
66.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
66.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
65.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
65.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
64.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
63.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
62.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
62.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
62.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
62.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
61.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
61.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
61.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
60.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
60.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
59.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
59.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
59.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
59.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
58.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
58.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
58.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
57.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
57.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
57.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
56.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
56.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
56.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
56.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
55.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
55.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
54.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
54.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
54.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
54.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
54.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
53.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
53.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
52.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
52.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
52.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
52.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
52.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
51.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
51.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
51.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
50.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
50.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
50.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
50.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
49.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
49.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
49.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
49.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
48.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
48.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
47.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
47.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
45.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
45.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
45.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
45.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
45.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
44.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
43.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
43.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
42.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
41.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
38.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
37.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
36.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
35.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
32.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
32.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
32.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
31.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
31.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
30.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
641
Tumor
1.4
1027
Tumor
1.3
685
Tumor
1.2
451
Tumor
1.2
915
Tumor
1.1
465
Tumor
1.0
697
Tumor
0.9
127
Tumor
0.8
817
Tumor
0.8
123
Tumor
0.8
695
Tumor
0.7
883
Tumor
0.7
1013
Tumor
0.7
435
Tumor
0.7
954
Normal
0.7
268
Normal
0.6
642
Normal
0.6
231
Tumor
0.6
388
Normal
0.6
925
Tumor
0.6
741
Tumor
0.6
744
Normal
0.5
571
Tumor
0.5
636
Normal
0.5
431
Tumor
0.5
553
Tumor
0.5
392
Normal
0.5
344
Normal
0.5
112
Tumor
0.5
137
Tumor
0.4
351
Tumor
0.4
963
Tumor
0.4
128
Normal
0.4
861
Tumor
0.4
395
Tumor
0.4
114
Normal
0.4
124
Normal
0.4
222
Normal
0.4
557
Tumor
0.4
524
Normal
0.4
171
Tumor
0.4
427
Tumor
0.4
394
Normal
0.4
536
Normal
0.4
342
Normal
0.4
618
Normal
0.4
944
Normal
0.3
396
Normal
0.3
513
Tumor
0.3
481
Tumor
0.3
713
Tumor
0.3
444
Normal
0.3
477
Tumor
0.3
498
Normal
0.3
478
Normal
0.3
672
Normal
0.3
387
Tumor
0.3
488
Normal
0.3
984
Normal
0.3
341
Tumor
0.3
126
Normal
0.3
878
Normal
0.3
352
Normal
0.3
924
Normal
0.3
818
Normal
0.3
217
Tumor
0.3
172
Normal
0.3
354
Normal
0.2
111
Normal
0.2
258
Normal
0.2
261
Tumor
0.2
456
Normal
0.2
376
Normal
0.2
468
Normal
0.2
813
Tumor
0.2
647
Tumor
0.2
433
Tumor
0.2
538
Normal
0.2
937
Tumor
0.2
368
Normal
0.2
483
Tumor
0.2
358
Normal
0.2
185
Tumor
0.2
192
Normal
0.2
148
Normal
0.2
357
Tumor
0.2
142
Normal
0.2
434
Normal
0.2
452
Normal
0.2
186
Normal
0.2
267
Tumor
0.2
922
Normal
0.2
113
Tumor
0.2
923
Tumor
0.2
911
Tumor
0.2
1043
Tumor
0.1
384
Normal
0.1
232
Normal
0.1
466
Normal
0.1
857
Tumor
0.1
1028
Normal
0.1
867
Tumor
0.1
1044
Normal
0.1
214
Normal
0.1
145
Tumor
0.1
443
Tumor
0.1
383
Tumor
0.1
446
Normal
0.1
648
Normal
0.1
426
Normal
0.1
527
Tumor
0.1
977
Tumor
0.1
448
Normal
0.1
635
Tumor
0.1
386
Normal
0.1
218
Normal
0.1
161
Tumor
0.1
188
Normal
0.1
191
Tumor
0.1
492
Normal
0.1
132
Normal
0.1
662
Normal
0.1
432
Normal
0.1
361
Tumor
0.1
146
Normal
0.1
196
Normal
0.1
921
Tumor
0.1
953
Tumor
0.1
482
Normal
0.1
525
Tumor
0.1
698
Normal
0.1
722
Normal
0.1
1032
Normal
0.1
916
Normal
0.1
816
Normal
0.1
967
Tumor
0.1
493
Tumor
0.1
228
Normal
0.1
526
Normal
0.0
494
Normal
0.0
852
Normal
0.0
938
Normal
0.0
484
Normal
0.0
1022
Normal
0.0
367
Tumor
0.0
627
Tumor
0.0
224
Normal
0.0
952
Normal
0.0
135
Tumor
0.0
327
Tumor
0.0
724
Normal
0.0
715
Tumor
0.0
917
Tumor
0.0
1015
Tumor
0.0
1014
Normal
0.0
628
Normal
0.0
1042
Normal
0.0
257
Tumor
0.0
195
Tumor
0.0
332
Normal
0.0
914
Normal
0.0
866
Normal
0.0
664
Normal
0.0
976
Normal
0.0
516
Normal
0.0
616
Normal
0.0
696
Normal
0.0
328
Normal
0.0
968
Normal
0.0
138
Normal
0.0
284
Normal
0.0
311
Tumor
0.0
464
Normal
0.0
272
Normal
0.0
814
Normal
0.0
981
Tumor
0.0
568
Normal
0.0
162
Normal
0.0
943
Tumor
0.0
858
Normal
0.0
487
Tumor
0.0
362
Normal
0.0
463
Tumor
0.0
574
Normal
0.0
746
Normal
0.0
686
Normal
0.0
366
Normal
0.0
534
Normal
0.0
298
Normal
0.0
414
Normal
-0.1
286
Normal
-0.1
262
Normal
-0.1
918
Normal
-0.1
364
Normal
-0.1
882
Normal
-0.1
1046
Normal
-0.1
824
Normal
-0.1
874
Normal
-0.1
778
Normal
-0.1
278
Normal
-0.1
424
Normal
-0.1
958
Normal
-0.1
227
Tumor
-0.1
343
Tumor
-0.1
356
Normal
-0.1
666
Normal
-0.1
714
Normal
-0.1
564
Normal
-0.1
873
Tumor
-0.1
1025
Tumor
-0.1
1016
Normal
-0.1
851
Tumor
-0.1
554
Normal
-0.1
982
Normal
-0.1
572
Normal
-0.1
445
Tumor
-0.1
314
Normal
-0.1
271
Tumor
-0.1
514
Normal
-0.1
472
Normal
-0.1
535
Tumor
-0.1
491
Tumor
-0.1
473
Tumor
-0.1
467
Tumor
-0.1
1021
Tumor
-0.1
436
Normal
-0.1
978
Normal
-0.1
385
Tumor
-0.1
528
Normal
-0.1
956
Normal
-0.1
665
Tumor
-0.1
563
Tumor
-0.1
1026
Normal
-0.1
212
Normal
-0.1
955
Tumor
-0.1
423
Tumor
-0.1
415
Tumor
-0.1
413
Tumor
-0.1
391
Tumor
-0.2
462
Normal
-0.2
365
Tumor
-0.2
518
Normal
-0.2
416
Normal
-0.2
411
Tumor
-0.2
615
Tumor
-0.2
864
Normal
-0.2
983
Tumor
-0.2
912
Normal
-0.2
913
Tumor
-0.2
617
Tumor
-0.2
497
Tumor
-0.2
862
Normal
-0.2
474
Normal
-0.2
363
Tumor
-0.2
884
Normal
-0.2
447
Tumor
-0.2
136
Normal
-0.2
663
Tumor
-0.2
546
Normal
-0.2
412
Normal
-0.2
353
Tumor
-0.2
756
Normal
-0.2
125
Tumor
-0.2
223
Tumor
-0.2
881
Tumor
-0.2
966
Normal
-0.2
728
Normal
-0.3
742
Normal
-0.3
755
Tumor
-0.3
716
Normal
-0.3
221
Tumor
-0.3
786
Normal
-0.3
517
Tumor
-0.3
721
Tumor
-0.3
975
Tumor
-0.3
964
Normal
-0.3
428
Normal
-0.3
187
Tumor
-0.3
422
Normal
-0.3
738
Normal
-0.3
558
Normal
-0.3
533
Tumor
-0.3
213
Tumor
-0.3
545
Tumor
-0.3
312
Normal
-0.3
515
Tumor
-0.3
723
Tumor
-0.3
785
Tumor
-0.3
523
Tumor
-0.3
147
Tumor
-0.3
877
Tumor
-0.3
661
Tumor
-0.4
393
Tumor
-0.4
926
Normal
-0.4
965
Tumor
-0.4
455
Tumor
-0.4
1045
Tumor
-0.4
815
Tumor
-0.4
1041
Tumor
-0.4
211
Tumor
-0.4
421
Tumor
-0.4
727
Tumor
-0.4
863
Tumor
-0.4
823
Tumor
-0.4
297
Tumor
-0.5
573
Tumor
-0.5
375
Tumor
-0.5
461
Tumor
-0.5
313
Tumor
-0.5
957
Tumor
-0.5
355
Tumor
-0.5
471
Tumor
-0.5
141
Tumor
-0.5
283
Tumor
-0.5
1031
Tumor
-0.5
277
Tumor
-0.6
331
Tumor
-0.6
285
Tumor
-0.6
868
Normal
-0.6
777
Tumor
-0.6
745
Tumor
-0.7
671
Tumor
-0.7
537
Tumor
-0.7
131
Tumor
-0.7
951
Tumor
-0.8
865
Tumor
-0.8
567
Tumor
-0.9
737
Tumor
-0.9
743
Tumor
-1.0
425
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.