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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PYCARD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
257.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
251.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
227.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
183.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
180.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
174.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
160.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
149.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
144.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
140.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
134.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
132.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
131.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
126.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
119.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
118.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
114.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
109.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
108.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
107.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
103.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
101.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
100.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
95.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
93.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
88.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
85.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
81.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
79.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
77.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
73.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
73.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
71.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
71.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
71.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
70.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
70.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
70.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
68.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
68.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
68.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
65.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
65.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
65.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
63.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
63.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
62.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
62.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
62.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
61.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
60.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
59.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
58.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
55.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
55.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
55.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
53.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
50.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
48.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
47.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
45.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
45.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
41.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
41.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
39.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
38.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
38.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
38.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
36.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
36.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
35.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
35.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
29.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
28.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PYCARD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
171.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
146.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
131.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
125.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
117.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
98.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
90.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
85.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
83.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
75.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
71.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
68.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
64.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
62.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
62.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
60.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
56.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
54.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
46.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
46.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
44.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
43.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
43.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
161
Tumor
1.8
395
Tumor
1.5
211
Tumor
1.4
953
Tumor
1.3
311
Tumor
1.3
423
Tumor
1.2
724
Normal
1.2
525
Tumor
1.1
195
Tumor
0.9
925
Tumor
0.9
434
Normal
0.9
145
Tumor
0.9
427
Tumor
0.9
355
Tumor
0.9
113
Tumor
0.9
411
Tumor
0.9
191
Tumor
0.8
661
Tumor
0.8
467
Tumor
0.8
814
Normal
0.8
477
Tumor
0.8
957
Tumor
0.7
563
Tumor
0.7
188
Normal
0.7
126
Normal
0.7
262
Normal
0.7
455
Tumor
0.7
917
Tumor
0.6
444
Normal
0.6
536
Normal
0.5
268
Normal
0.5
916
Normal
0.5
461
Tumor
0.5
125
Tumor
0.5
224
Normal
0.5
124
Normal
0.5
375
Tumor
0.5
393
Tumor
0.4
524
Normal
0.4
357
Tumor
0.4
966
Normal
0.4
498
Normal
0.4
447
Tumor
0.4
192
Normal
0.4
492
Normal
0.4
465
Tumor
0.4
146
Normal
0.4
141
Tumor
0.4
913
Tumor
0.4
478
Normal
0.4
383
Tumor
0.4
384
Normal
0.4
185
Tumor
0.3
362
Normal
0.3
297
Tumor
0.3
662
Normal
0.3
147
Tumor
0.3
978
Normal
0.3
284
Normal
0.3
386
Normal
0.3
721
Tumor
0.3
883
Tumor
0.3
1013
Tumor
0.3
456
Normal
0.3
432
Normal
0.3
817
Tumor
0.3
213
Tumor
0.3
451
Tumor
0.3
963
Tumor
0.2
468
Normal
0.2
641
Tumor
0.2
366
Normal
0.2
138
Normal
0.2
954
Normal
0.2
212
Normal
0.2
367
Tumor
0.2
538
Normal
0.2
344
Normal
0.2
341
Tumor
0.2
914
Normal
0.2
983
Tumor
0.2
136
Normal
0.2
217
Tumor
0.2
716
Normal
0.2
111
Normal
0.2
951
Tumor
0.2
516
Normal
0.2
385
Tumor
0.2
114
Normal
0.2
187
Tumor
0.2
493
Tumor
0.2
686
Normal
0.2
332
Normal
0.2
852
Normal
0.1
813
Tumor
0.1
443
Tumor
0.1
343
Tumor
0.1
926
Normal
0.1
558
Normal
0.1
358
Normal
0.1
365
Tumor
0.1
666
Normal
0.1
628
Normal
0.1
272
Normal
0.1
416
Normal
0.1
186
Normal
0.1
364
Normal
0.1
267
Tumor
0.1
861
Tumor
0.1
162
Normal
0.1
214
Normal
0.1
474
Normal
0.1
392
Normal
0.1
1042
Normal
0.1
391
Tumor
0.1
218
Normal
0.1
918
Normal
0.1
231
Tumor
0.0
421
Tumor
0.0
672
Normal
0.0
943
Tumor
0.0
368
Normal
0.0
574
Normal
0.0
958
Normal
0.0
394
Normal
0.0
424
Normal
0.0
396
Normal
0.0
466
Normal
0.0
663
Tumor
0.0
535
Tumor
0.0
286
Normal
0.0
1015
Tumor
0.0
738
Normal
0.0
696
Normal
0.0
1021
Tumor
0.0
312
Normal
0.0
664
Normal
0.0
354
Normal
0.0
464
Normal
0.0
742
Normal
0.0
956
Normal
0.0
414
Normal
0.0
283
Tumor
0.0
415
Tumor
-0.1
491
Tumor
-0.1
137
Tumor
-0.1
494
Normal
-0.1
352
Normal
-0.1
1044
Normal
-0.1
557
Tumor
-0.1
723
Tumor
-0.1
413
Tumor
-0.1
713
Tumor
-0.1
331
Tumor
-0.1
258
Normal
-0.1
446
Normal
-0.1
428
Normal
-0.1
514
Normal
-0.1
851
Tumor
-0.1
1028
Normal
-0.1
172
Normal
-0.1
376
Normal
-0.1
984
Normal
-0.1
361
Tumor
-0.1
922
Normal
-0.1
1026
Normal
-0.1
528
Normal
-0.1
518
Normal
-0.1
976
Normal
-0.1
472
Normal
-0.1
298
Normal
-0.1
567
Tumor
-0.1
924
Normal
-0.1
881
Tumor
-0.1
823
Tumor
-0.2
938
Normal
-0.2
573
Tumor
-0.2
328
Normal
-0.2
422
Normal
-0.2
142
Normal
-0.2
858
Normal
-0.2
1046
Normal
-0.2
228
Normal
-0.2
412
Normal
-0.2
148
Normal
-0.2
857
Tumor
-0.2
526
Normal
-0.2
353
Tumor
-0.2
862
Normal
-0.2
463
Tumor
-0.2
232
Normal
-0.2
1016
Normal
-0.2
342
Normal
-0.2
196
Normal
-0.2
135
Tumor
-0.3
952
Normal
-0.3
884
Normal
-0.3
698
Normal
-0.3
433
Tumor
-0.3
874
Normal
-0.3
564
Normal
-0.3
968
Normal
-0.3
964
Normal
-0.3
546
Normal
-0.3
816
Normal
-0.3
912
Normal
-0.3
778
Normal
-0.3
452
Normal
-0.3
545
Tumor
-0.3
462
Normal
-0.3
278
Normal
-0.3
388
Normal
-0.3
488
Normal
-0.3
1022
Normal
-0.3
868
Normal
-0.3
363
Tumor
-0.3
722
Normal
-0.3
261
Tumor
-0.3
128
Normal
-0.3
435
Tumor
-0.3
665
Tumor
-0.3
864
Normal
-0.3
533
Tumor
-0.3
426
Normal
-0.3
923
Tumor
-0.3
617
Tumor
-0.3
786
Normal
-0.3
448
Normal
-0.3
824
Normal
-0.3
471
Tumor
-0.3
744
Normal
-0.4
714
Normal
-0.4
944
Normal
-0.4
277
Tumor
-0.4
695
Tumor
-0.4
314
Normal
-0.4
728
Normal
-0.4
222
Normal
-0.4
697
Tumor
-0.4
1031
Tumor
-0.4
636
Normal
-0.4
387
Tumor
-0.4
132
Normal
-0.4
975
Tumor
-0.4
1032
Normal
-0.4
647
Tumor
-0.4
982
Normal
-0.4
882
Normal
-0.4
727
Tumor
-0.4
818
Normal
-0.4
327
Tumor
-0.4
537
Tumor
-0.4
223
Tumor
-0.4
356
Normal
-0.4
568
Normal
-0.4
554
Normal
-0.5
572
Normal
-0.5
648
Normal
-0.5
436
Normal
-0.5
756
Normal
-0.5
313
Tumor
-0.5
878
Normal
-0.5
1014
Normal
-0.5
616
Normal
-0.5
482
Normal
-0.5
618
Normal
-0.5
815
Tumor
-0.5
955
Tumor
-0.5
642
Normal
-0.6
171
Tumor
-0.6
977
Tumor
-0.6
534
Normal
-0.6
967
Tumor
-0.6
671
Tumor
-0.6
271
Tumor
-0.6
425
Tumor
-0.6
497
Tumor
-0.7
484
Normal
-0.7
915
Tumor
-0.7
866
Normal
-0.7
1027
Tumor
-0.7
1043
Tumor
-0.7
715
Tumor
-0.7
746
Normal
-0.7
431
Tumor
-0.7
127
Tumor
-0.7
921
Tumor
-0.7
123
Tumor
-0.7
685
Tumor
-0.7
481
Tumor
-0.7
483
Tumor
-0.8
517
Tumor
-0.8
867
Tumor
-0.8
1045
Tumor
-0.9
553
Tumor
-0.9
981
Tumor
-0.9
627
Tumor
-0.9
523
Tumor
-0.9
285
Tumor
-1.0
937
Tumor
-1.0
745
Tumor
-1.0
227
Tumor
-1.0
965
Tumor
-1.0
571
Tumor
-1.1
221
Tumor
-1.1
515
Tumor
-1.1
737
Tumor
-1.1
257
Tumor
-1.2
865
Tumor
-1.2
1041
Tumor
-1.2
487
Tumor
-1.2
473
Tumor
-1.2
877
Tumor
-1.2
785
Tumor
-1.2
873
Tumor
-1.3
863
Tumor
-1.3
131
Tumor
-1.3
1025
Tumor
-1.3
513
Tumor
-1.3
112
Tumor
-1.3
755
Tumor
-1.4
351
Tumor
-1.4
743
Tumor
-1.4
527
Tumor
-1.5
615
Tumor
-1.5
445
Tumor
-1.5
741
Tumor
-1.6
911
Tumor
-1.8
635
Tumor
-2.0
777
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
