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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
QPRT is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
121.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
379.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
352.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
351.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
350.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
324.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
306.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
301.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
292.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
290.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
287.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
271.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
270.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
270.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
268.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
267.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
265.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
261.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
260.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
258.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
258.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
249.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
249.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
238.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
226.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
224.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
220.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
219.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
218.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
218.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
217.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
215.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
214.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
214.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
212.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
212.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
210.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
208.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
208.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
207.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
204.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
201.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
199.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
198.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
197.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
196.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
195.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
194.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
194.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
194.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
194.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
191.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
191.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
189.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
188.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
188.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
188.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
186.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
186.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
185.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
185.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
183.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
182.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
180.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
178.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
178.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
177.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
176.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
175.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
174.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
174.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
173.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
172.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
171.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
171.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
170.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
170.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
169.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
168.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
168.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
167.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
165.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
163.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
162.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
161.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
161.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
160.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
159.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
158.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
157.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
157.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
156.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
155.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
155.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
154.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
154.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
154.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
152.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
152.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
150.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
150.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
149.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
149.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
149.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
148.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
148.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
148.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
148.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
147.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
146.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
145.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
144.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
144.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
143.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
142.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
142.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
141.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
141.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
141.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
141.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
140.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
139.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
139.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
138.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
138.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
137.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
137.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
137.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
136.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
135.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
135.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
134.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
134.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
134.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
134.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
132.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
132.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
132.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
131.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
131.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
131.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
131.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
131.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
130.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
130.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
130.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
129.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
128.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
127.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
126.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
126.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
126.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
126.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
126.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
125.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
125.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
125.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
124.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
124.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
124.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
123.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
123.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
123.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
122.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
122.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
122.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
121.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
121.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
120.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
119.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
118.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
118.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
116.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
115.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
114.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
114.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
114.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
113.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
112.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
111.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
110.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
110.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
110.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
109.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
109.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
109.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
108.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
107.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
107.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
106.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
105.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
105.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
105.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
104.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
104.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
104.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
104.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
104.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
102.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
102.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
101.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
101.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
100.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
100.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
99.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
97.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
97.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
97.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
96.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
96.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
95.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
94.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
94.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
94.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
94.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
92.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
92.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
91.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
90.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
90.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
90.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
90.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
89.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
89.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
88.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
88.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
88.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
87.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
87.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
87.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
86.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
86.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
86.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
86.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
86.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
86.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
85.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
85.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
85.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
84.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
83.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
83.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
83.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
83.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
83.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
82.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
82.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
82.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
81.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
81.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
81.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
81.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
81.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
80.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
80.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
80.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
80.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
79.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
79.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
79.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
78.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
78.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
77.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
77.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
77.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
76.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
76.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
76.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
76.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
76.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
75.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
74.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
74.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
74.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
73.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
73.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
73.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
72.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
72.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
72.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
72.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
72.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
72.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
72.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
71.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
71.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
71.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
70.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
69.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
69.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
69.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
69.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
68.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
68.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
67.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
67.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
66.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
66.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
66.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
65.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
65.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
65.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
63.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
62.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
61.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
61.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
59.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
58.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
58.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
58.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
57.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
56.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
56.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
56.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
56.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
55.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
54.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
54.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
53.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
52.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
52.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
51.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
51.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
49.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
48.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
48.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
47.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
47.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
47.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
47.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
45.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
45.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
37.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
35.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
QPRT is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
72.4
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
238.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
224.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
203.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
200.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
187.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
179.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
179.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
173.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
172.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
162.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
161.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
155.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
154.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
148.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
148.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
145.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
144.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
142.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
136.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
135.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
133.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
133.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
133.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
132.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
127.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
125.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
125.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
125.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
124.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
123.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
120.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
119.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
119.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
118.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
118.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
117.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
115.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
114.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
113.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
112.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
112.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
109.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
109.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
109.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
106.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
106.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
106.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
105.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
105.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
101.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
101.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
99.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
98.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
96.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
96.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
95.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
95.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
95.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
95.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
94.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
94.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
93.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
91.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
91.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
91.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
88.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
87.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
87.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
86.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
86.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
85.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
85.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
85.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
85.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
85.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
85.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
85.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
84.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
83.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
83.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
83.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
83.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
82.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
81.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
81.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
79.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
78.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
78.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
77.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
77.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
76.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
76.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
76.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
76.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
75.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
74.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
74.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
74.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
73.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
73.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
72.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
72.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
72.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
71.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
70.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
69.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
69.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
69.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
68.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
66.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
65.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
65.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
63.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
63.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
63.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
63.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
63.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
62.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
62.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
62.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
62.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
61.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
61.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
59.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
59.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
59.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
59.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
59.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
59.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
58.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
57.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
57.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
56.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
56.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
55.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
54.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
53.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
52.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
52.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
52.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
51.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
50.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
50.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
50.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
50.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
49.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
48.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
48.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
48.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
48.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
47.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
45.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
43.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
43.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
43.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
41.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
41.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
41.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
41.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
40.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
40.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
40.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
40.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
39.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
38.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
36.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
34.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
435
Tumor
0.9
342
Normal
0.9
436
Normal
0.9
742
Normal
0.9
1027
Tumor
0.9
746
Normal
0.8
171
Tumor
0.8
648
Normal
0.7
714
Normal
0.7
864
Normal
0.7
462
Normal
0.7
132
Normal
0.7
465
Tumor
0.7
172
Normal
0.6
147
Tumor
0.6
824
Normal
0.6
1013
Tumor
0.6
186
Normal
0.6
162
Normal
0.6
314
Normal
0.6
695
Tumor
0.6
738
Normal
0.6
452
Normal
0.6
952
Normal
0.6
136
Normal
0.6
715
Tumor
0.5
278
Normal
0.5
866
Normal
0.5
883
Tumor
0.5
641
Tumor
0.5
1026
Normal
0.5
426
Normal
0.5
862
Normal
0.5
964
Normal
0.5
387
Tumor
0.5
723
Tumor
0.5
298
Normal
0.5
664
Normal
0.5
365
Tumor
0.5
1016
Normal
0.4
466
Normal
0.4
127
Tumor
0.4
728
Normal
0.4
464
Normal
0.4
617
Tumor
0.4
432
Normal
0.4
534
Normal
0.4
1022
Normal
0.4
313
Tumor
0.4
882
Normal
0.4
618
Normal
0.4
663
Tumor
0.4
232
Normal
0.4
976
Normal
0.4
968
Normal
0.4
414
Normal
0.4
258
Normal
0.4
123
Tumor
0.4
816
Normal
0.4
528
Normal
0.4
858
Normal
0.4
358
Normal
0.4
111
Normal
0.3
137
Tumor
0.3
394
Normal
0.3
513
Tumor
0.3
1046
Normal
0.3
716
Normal
0.3
148
Normal
0.3
361
Tumor
0.3
196
Normal
0.3
366
Normal
0.3
472
Normal
0.3
376
Normal
0.3
451
Tumor
0.3
446
Normal
0.3
698
Normal
0.3
912
Normal
0.3
786
Normal
0.3
982
Normal
0.3
546
Normal
0.3
494
Normal
0.3
868
Normal
0.3
944
Normal
0.3
413
Tumor
0.3
393
Tumor
0.3
878
Normal
0.2
357
Tumor
0.2
267
Tumor
0.2
424
Normal
0.2
456
Normal
0.2
568
Normal
0.2
477
Tumor
0.2
356
Normal
0.2
344
Normal
0.2
368
Normal
0.2
422
Normal
0.2
741
Tumor
0.2
482
Normal
0.2
666
Normal
0.2
1032
Normal
0.2
445
Tumor
0.2
262
Normal
0.2
128
Normal
0.2
388
Normal
0.2
642
Normal
0.2
938
Normal
0.2
362
Normal
0.2
468
Normal
0.2
488
Normal
0.2
428
Normal
0.2
114
Normal
0.2
354
Normal
0.2
286
Normal
0.2
312
Normal
0.2
391
Tumor
0.2
474
Normal
0.2
963
Tumor
0.2
518
Normal
0.2
926
Normal
0.2
744
Normal
0.2
222
Normal
0.2
874
Normal
0.2
228
Normal
0.2
1045
Tumor
0.2
756
Normal
0.2
514
Normal
0.2
124
Normal
0.2
1014
Normal
0.1
484
Normal
0.1
332
Normal
0.1
696
Normal
0.1
818
Normal
0.1
984
Normal
0.1
918
Normal
0.1
564
Normal
0.1
138
Normal
0.1
396
Normal
0.1
231
Tumor
0.1
272
Normal
0.1
212
Normal
0.1
616
Normal
0.1
392
Normal
0.1
142
Normal
0.1
386
Normal
0.1
352
Normal
0.1
778
Normal
0.1
423
Tumor
0.1
867
Tumor
0.1
574
Normal
0.1
448
Normal
0.1
966
Normal
0.1
722
Normal
0.1
685
Tumor
0.1
884
Normal
0.1
635
Tumor
0.1
218
Normal
0.1
662
Normal
0.0
967
Tumor
0.0
627
Tumor
0.0
416
Normal
0.0
572
Normal
0.0
516
Normal
0.0
955
Tumor
0.0
914
Normal
0.0
925
Tumor
0.0
188
Normal
0.0
113
Tumor
0.0
558
Normal
0.0
755
Tumor
0.0
367
Tumor
0.0
341
Tumor
0.0
146
Normal
0.0
126
Normal
-0.1
223
Tumor
-0.1
724
Normal
-0.1
965
Tumor
-0.1
686
Normal
-0.1
328
Normal
-0.1
284
Normal
-0.1
1044
Normal
-0.1
956
Normal
-0.1
1021
Tumor
-0.1
434
Normal
-0.1
412
Normal
-0.1
958
Normal
-0.1
214
Normal
-0.1
1042
Normal
-0.2
145
Tumor
-0.2
852
Normal
-0.2
628
Normal
-0.2
1028
Normal
-0.2
922
Normal
-0.2
526
Normal
-0.2
953
Tumor
-0.2
745
Tumor
-0.2
978
Normal
-0.2
297
Tumor
-0.2
672
Normal
-0.2
554
Normal
-0.2
261
Tumor
-0.2
615
Tumor
-0.2
443
Tumor
-0.2
523
Tumor
-0.2
257
Tumor
-0.2
461
Tumor
-0.2
665
Tumor
-0.2
957
Tumor
-0.2
636
Normal
-0.3
353
Tumor
-0.3
563
Tumor
-0.3
224
Normal
-0.3
915
Tumor
-0.3
327
Tumor
-0.3
384
Normal
-0.3
557
Tumor
-0.3
141
Tumor
-0.3
515
Tumor
-0.3
187
Tumor
-0.3
364
Normal
-0.3
743
Tumor
-0.3
571
Tumor
-0.3
444
Normal
-0.3
478
Normal
-0.3
517
Tumor
-0.3
924
Normal
-0.4
268
Normal
-0.4
916
Normal
-0.4
192
Normal
-0.4
647
Tumor
-0.4
573
Tumor
-0.4
857
Tumor
-0.4
873
Tumor
-0.4
185
Tumor
-0.4
1015
Tumor
-0.4
533
Tumor
-0.4
161
Tumor
-0.4
351
Tumor
-0.4
493
Tumor
-0.5
954
Normal
-0.5
981
Tumor
-0.5
983
Tumor
-0.5
545
Tumor
-0.5
814
Normal
-0.5
553
Tumor
-0.5
492
Normal
-0.5
421
Tumor
-0.5
125
Tumor
-0.5
863
Tumor
-0.5
567
Tumor
-0.5
977
Tumor
-0.5
455
Tumor
-0.5
813
Tumor
-0.6
411
Tumor
-0.6
195
Tumor
-0.6
217
Tumor
-0.6
498
Normal
-0.6
527
Tumor
-0.6
112
Tumor
-0.6
535
Tumor
-0.6
851
Tumor
-0.6
395
Tumor
-0.7
817
Tumor
-0.7
135
Tumor
-0.7
713
Tumor
-0.7
481
Tumor
-0.7
191
Tumor
-0.7
463
Tumor
-0.7
537
Tumor
-0.7
525
Tumor
-0.7
721
Tumor
-0.7
727
Tumor
-0.8
343
Tumor
-0.8
355
Tumor
-0.8
538
Normal
-0.8
433
Tumor
-0.8
777
Tumor
-0.8
815
Tumor
-0.8
363
Tumor
-0.8
785
Tumor
-0.9
877
Tumor
-0.9
227
Tumor
-0.9
536
Normal
-0.9
861
Tumor
-0.9
415
Tumor
-0.9
1041
Tumor
-0.9
923
Tumor
-0.9
524
Normal
-0.9
425
Tumor
-0.9
497
Tumor
-0.9
331
Tumor
-1.0
131
Tumor
-1.0
467
Tumor
-1.0
1043
Tumor
-1.0
913
Tumor
-1.0
911
Tumor
-1.0
943
Tumor
-1.0
375
Tumor
-1.0
277
Tumor
-1.1
661
Tumor
-1.1
491
Tumor
-1.1
737
Tumor
-1.1
975
Tumor
-1.1
671
Tumor
-1.1
285
Tumor
-1.1
431
Tumor
-1.1
471
Tumor
-1.1
221
Tumor
-1.1
823
Tumor
-1.2
921
Tumor
-1.2
473
Tumor
-1.2
447
Tumor
-1.3
271
Tumor
-1.3
937
Tumor
-1.3
487
Tumor
-1.3
283
Tumor
-1.3
881
Tumor
-1.3
385
Tumor
-1.4
1025
Tumor
-1.4
383
Tumor
-1.5
1031
Tumor
-1.5
427
Tumor
-1.5
917
Tumor
-1.5
951
Tumor
-1.5
311
Tumor
-1.6
483
Tumor
-1.6
865
Tumor
-1.8
697
Tumor
-1.9
213
Tumor
-1.9
211
Tumor
-2.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.