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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIAO3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
30.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
465
Tumor
1.1
635
Tumor
0.9
695
Tumor
0.9
533
Tumor
0.6
571
Tumor
0.6
1013
Tumor
0.6
1022
Normal
0.6
357
Tumor
0.6
1045
Tumor
0.5
723
Tumor
0.5
755
Tumor
0.5
912
Normal
0.5
913
Tumor
0.5
647
Tumor
0.5
1026
Normal
0.5
742
Normal
0.4
482
Normal
0.4
925
Tumor
0.4
616
Normal
0.4
472
Normal
0.4
513
Tumor
0.4
666
Normal
0.4
955
Tumor
0.4
953
Tumor
0.4
1044
Normal
0.4
1046
Normal
0.4
1032
Normal
0.4
852
Normal
0.4
824
Normal
0.3
358
Normal
0.3
456
Normal
0.3
685
Tumor
0.3
298
Normal
0.3
884
Normal
0.3
738
Normal
0.3
728
Normal
0.3
858
Normal
0.3
777
Tumor
0.3
488
Normal
0.3
714
Normal
0.3
618
Normal
0.3
924
Normal
0.3
1042
Normal
0.3
868
Normal
0.3
664
Normal
0.3
663
Tumor
0.3
818
Normal
0.3
112
Tumor
0.3
376
Normal
0.3
628
Normal
0.3
342
Normal
0.3
436
Normal
0.3
756
Normal
0.3
617
Tumor
0.3
362
Normal
0.3
313
Tumor
0.3
882
Normal
0.3
278
Normal
0.3
361
Tumor
0.3
462
Normal
0.3
497
Tumor
0.3
411
Tumor
0.3
558
Normal
0.3
432
Normal
0.3
428
Normal
0.3
746
Normal
0.3
426
Normal
0.3
573
Tumor
0.3
414
Normal
0.3
354
Normal
0.2
866
Normal
0.2
874
Normal
0.2
816
Normal
0.2
466
Normal
0.2
926
Normal
0.2
864
Normal
0.2
716
Normal
0.2
1014
Normal
0.2
862
Normal
0.2
958
Normal
0.2
546
Normal
0.2
494
Normal
0.2
952
Normal
0.2
366
Normal
0.2
484
Normal
0.2
343
Tumor
0.2
423
Tumor
0.2
383
Tumor
0.2
978
Normal
0.2
222
Normal
0.2
478
Normal
0.2
132
Normal
0.2
498
Normal
0.2
696
Normal
0.2
914
Normal
0.2
528
Normal
0.2
214
Normal
0.2
146
Normal
0.2
698
Normal
0.2
1028
Normal
0.2
487
Tumor
0.2
126
Normal
0.2
672
Normal
0.2
312
Normal
0.2
445
Tumor
0.2
516
Normal
0.2
648
Normal
0.2
473
Tumor
0.2
231
Tumor
0.2
572
Normal
0.2
722
Normal
0.2
368
Normal
0.2
391
Tumor
0.2
915
Tumor
0.2
172
Normal
0.2
267
Tumor
0.2
1016
Normal
0.2
642
Normal
0.2
386
Normal
0.2
922
Normal
0.2
355
Tumor
0.2
911
Tumor
0.2
523
Tumor
0.2
114
Normal
0.2
514
Normal
0.2
627
Tumor
0.2
272
Normal
0.2
715
Tumor
0.2
468
Normal
0.2
141
Tumor
0.2
878
Normal
0.2
416
Normal
0.2
966
Normal
0.2
956
Normal
0.2
916
Normal
0.2
424
Normal
0.2
186
Normal
0.2
394
Normal
0.2
111
Normal
0.2
332
Normal
0.2
968
Normal
0.2
741
Tumor
0.2
124
Normal
0.2
142
Normal
0.2
162
Normal
0.1
384
Normal
0.1
147
Tumor
0.1
662
Normal
0.1
982
Normal
0.1
395
Tumor
0.1
964
Normal
0.1
365
Tumor
0.1
785
Tumor
0.1
327
Tumor
0.1
786
Normal
0.1
136
Normal
0.1
364
Normal
0.1
258
Normal
0.1
285
Tumor
0.1
518
Normal
0.1
981
Tumor
0.1
873
Tumor
0.1
148
Normal
0.1
867
Tumor
0.1
534
Normal
0.1
944
Normal
0.1
636
Normal
0.1
367
Tumor
0.1
957
Tumor
0.1
564
Normal
0.1
976
Normal
0.1
686
Normal
0.1
228
Normal
0.1
262
Normal
0.1
286
Normal
0.1
128
Normal
0.1
196
Normal
0.1
474
Normal
0.1
568
Normal
0.1
218
Normal
0.1
515
Tumor
0.1
145
Tumor
0.1
232
Normal
0.1
448
Normal
0.1
127
Tumor
0.1
392
Normal
0.1
351
Tumor
0.1
446
Normal
0.1
615
Tumor
0.1
412
Normal
0.1
422
Normal
0.1
353
Tumor
0.1
574
Normal
0.1
954
Normal
0.1
393
Tumor
0.1
464
Normal
0.1
135
Tumor
0.1
527
Tumor
0.1
665
Tumor
0.1
813
Tumor
0.1
724
Normal
0.1
554
Normal
0.1
192
Normal
0.1
938
Normal
0.1
352
Normal
0.1
481
Tumor
0.1
536
Normal
0.1
328
Normal
0.1
344
Normal
0.0
224
Normal
0.0
967
Tumor
0.0
697
Tumor
0.0
815
Tumor
0.0
447
Tumor
0.0
778
Normal
0.0
918
Normal
0.0
563
Tumor
0.0
314
Normal
0.0
356
Normal
0.0
284
Normal
0.0
1041
Tumor
0.0
388
Normal
0.0
857
Tumor
0.0
268
Normal
0.0
525
Tumor
0.0
923
Tumor
0.0
188
Normal
0.0
492
Normal
0.0
526
Normal
0.0
113
Tumor
0.0
851
Tumor
0.0
427
Tumor
0.0
212
Normal
0.0
125
Tumor
0.0
191
Tumor
0.0
524
Normal
0.0
171
Tumor
0.0
452
Normal
-0.1
977
Tumor
-0.1
434
Normal
-0.1
861
Tumor
-0.1
545
Tumor
-0.1
721
Tumor
-0.1
535
Tumor
-0.1
984
Normal
-0.1
277
Tumor
-0.1
187
Tumor
-0.1
744
Normal
-0.1
195
Tumor
-0.1
431
Tumor
-0.1
1027
Tumor
-0.1
1021
Tumor
-0.1
396
Normal
-0.1
433
Tumor
-0.1
493
Tumor
-0.1
937
Tumor
-0.1
221
Tumor
-0.1
415
Tumor
-0.1
538
Normal
-0.1
477
Tumor
-0.1
917
Tumor
-0.1
341
Tumor
-0.1
1015
Tumor
-0.1
123
Tumor
-0.1
138
Normal
-0.1
881
Tumor
-0.2
823
Tumor
-0.2
661
Tumor
-0.2
921
Tumor
-0.2
461
Tumor
-0.2
444
Normal
-0.2
451
Tumor
-0.2
387
Tumor
-0.2
375
Tumor
-0.2
217
Tumor
-0.2
455
Tumor
-0.2
331
Tumor
-0.2
311
Tumor
-0.2
814
Normal
-0.2
557
Tumor
-0.2
297
Tumor
-0.2
161
Tumor
-0.2
413
Tumor
-0.2
185
Tumor
-0.2
463
Tumor
-0.2
271
Tumor
-0.2
491
Tumor
-0.2
877
Tumor
-0.2
443
Tumor
-0.2
1031
Tumor
-0.3
727
Tumor
-0.3
567
Tumor
-0.3
213
Tumor
-0.3
257
Tumor
-0.3
745
Tumor
-0.3
467
Tumor
-0.3
435
Tumor
-0.3
943
Tumor
-0.3
261
Tumor
-0.3
421
Tumor
-0.3
1043
Tumor
-0.3
883
Tumor
-0.3
483
Tumor
-0.4
553
Tumor
-0.4
131
Tumor
-0.4
817
Tumor
-0.4
975
Tumor
-0.4
983
Tumor
-0.4
951
Tumor
-0.4
223
Tumor
-0.4
137
Tumor
-0.4
965
Tumor
-0.4
363
Tumor
-0.4
963
Tumor
-0.4
211
Tumor
-0.4
865
Tumor
-0.5
283
Tumor
-0.5
471
Tumor
-0.5
713
Tumor
-0.5
737
Tumor
-0.5
863
Tumor
-0.5
641
Tumor
-0.5
425
Tumor
-0.5
517
Tumor
-0.6
671
Tumor
-0.6
537
Tumor
-0.6
1025
Tumor
-0.6
385
Tumor
-0.6
227
Tumor
-0.7
743
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
