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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3426.1
nTPM
Monaco:
4169.1
nTPM
GRANULOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3426.1
HPA sample
nTPM
Basophil nTPM: 741.9
Samples: 4
Max nTPM: 939.7
Min nTPM: 614.8
P10809_1038
646.8
P10809_1057
614.8
P10809_1084
939.7
P10809_1102
766.4
Eosinophil nTPM: 3426.1
Samples: 6
Max nTPM: 3775.5
Min nTPM: 2886.2
P10809_1002
2914.2
P10809_1021
3775.5
P10809_1040
2886.2
P10809_1059
3553.2
P10809_1078
3760.8
P10809_1101
3666.9
Neutrophil nTPM: 1764.5
Samples: 6
Max nTPM: 2713.8
Min nTPM: 777.1
P10809_1019
2144.6
P10809_1032
1770.8
P10809_1051
1216.4
P10809_1070
777.1
P10809_1079
1964.2
P10809_1096
2713.8
GRANULOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
