MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:40.2 nTPM
GTEx:16.0 nTPM
FANTOM5:39.2 Scaled Tags Per Million
Pig:10.6 nTPM
Mouse:13.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.6
2411 Female, age 72, unknown 43.0
1833 Male, age 53, unknown 41.4
1830 Male, age 51, unknown 40.4
1870 Female, age 42, unknown 37.3
2019 Male, age 18, unknown 36.9
2219 Male, age 76, both hemispheres 36.9
1827 Male, age 72, unknown 36.6
2828 Female, age 72, unknown 35.3
2666 Male, age 74, left hemisphere 34.4
2586 Male, age 75, left hemisphere 34.1
Dorsal raphe nucleus
nTPM: 36.9
2750 Male, age 76, both hemispheres 40.2
2016 Female, age 72, unknown 39.4
2047 Male, age 72, unknown 37.9
1828 Male, age 53, unknown 33.9
2298 Female, age 72, unknown 33.2
Inferior colliculus
nTPM: 36.6
2849 Male, age 72, unknown 38.1
1890 Male, age 53, unknown 36.7
1848 Female, age 42, unknown 36.1
2097 Female, age 72, unknown 35.4
Median raphe nucleus
nTPM: 37.9
2220 Male, age 76, midline 37.9
Periaquaductal grey, anterior
nTPM: 35.0
1947 Male, age 18, unknown 35.9
2502 Female, age 75, unknown 35.7
1795 Male, age 51, unknown 33.4
Periaquaductal grey, dorsal
nTPM: 35.5
1840 Male, age 53, unknown 39.6
2464 Female, age 72, unknown 37.5
2850 Male, age 76, both hemispheres 32.9
1831 Male, age 72, unknown 31.8
Periaquaductal grey, lateral
nTPM: 35.1
2140 Male, age 76, both hemispheres 36.9
2272 Male, age 74, both hemispheres 34.7
2053 Male, age 18, unknown 33.6
Pretectal area
nTPM: 36.3
2316 Male, age 76, right hemisphere 46.8
2825 Male, age 18, unknown 40.7
2407 Male, age 75, both hemispheres 40.6
2667 Female, age 75, unknown 38.0
2224 Female, age 72, unknown 37.4
2007 Male, age 72, unknown 33.8
1816 Male, age 51, unknown 33.3
1815 Male, age 53, unknown 33.2
1817 Female, age 42, unknown 31.9
1944 Female, age 72, unknown 31.8
2273 Male, age 74, both hemispheres 31.5
Red nucleus
nTPM: 40.2
2588 Male, age 74, left hemisphere 43.5
2823 Male, age 76, right hemisphere 43.5
1904 Male, age 53, unknown 42.8
2503 Female, age 72, unknown 42.2
2227 Male, age 72, unknown 40.9
2769 Male, age 72, unknown 40.3
1865 Male, age 51, unknown 39.8
2725 Female, age 75, unknown 38.8
2785 Male, age 18, unknown 38.5
1954 Female, age 42, unknown 38.1
1821 Female, age 72, unknown 37.6
2584 Male, age 75, left hemisphere 36.0
Substantia nigra
nTPM: 35.7
2409 Female, age 72, unknown 41.0
2583 Male, age 75, right hemisphere 40.3
1851 Male, age 51, unknown 37.4
2241 Male, age 72, unknown 36.8
2590 Female, age 75, unknown 36.1
2699 Male, age 18, unknown 34.9
1889 Female, age 72, unknown 34.0
1916 Female, age 42, unknown 32.7
1941 Male, age 53, unknown 32.4
2665 Male, age 74, both hemispheres 31.5
Superior colliculus
nTPM: 36.0
1895 Male, age 76, right hemisphere 41.9
1913 Female, age 42, unknown 40.0
1995 Male, age 72, unknown 38.1
2587 Male, age 74, left hemisphere 36.5
1839 Male, age 51, unknown 35.8
2261 Male, age 18, unknown 34.8
2087 Female, age 72, unknown 34.0
2668 Female, age 75, unknown 33.9
1796 Male, age 53, unknown 33.3
2664 Male, age 75, both hemispheres 31.2
Ventral tegmental area
nTPM: 36.9
2410 Female, age 72, unknown 41.0
2021 Male, age 53, unknown 38.8
2223 Female, age 72, unknown 37.4
1942 Male, age 51, unknown 37.0
2218 Male, age 76, both hemispheres 33.9
1915 Female, age 42, unknown 33.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 139

Max nTPM: 45.1
Min nTPM: 8.4
Std nTPM: 4.5
Median nTPM: 15.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 24.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 24.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 24.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 23.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 23.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 23.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 22.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 22.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.2
FF:10158-103A5 76 years, female 39.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.5
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.3
Sample A Female 8.3
Sample B Female 9.0
Sample C Male 10.6
Sample D Male 10.0
Midbrain
nTPM: 10.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 8.1
Sample A Female 11.7
Sample B Female 8.1
Sample C Male 11.9
Sample D Male 10.6
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 10.3
Min nTPM: 9.0
Sample B Female 9.0
Sample C Male 10.3
Sample D Male 10.3
Superior colliculi
nTPM: 10.6
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 11.4
Sample C Male 11.7
Sample D Male 10.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.6
Sample A Male 11.6
Sample B Male 13.4
Sample C Female 13.9
Sample D Female 14.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71764855 Antisense, RP_050926_01_H11, Mouse strain C57BL/6J (56 days, male) 0.3

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