MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:17.3 nTPM
GTEx:8.9 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:11.1 nTPM
Mouse:11.7 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
2666 Male, age 74, left hemisphere 18.2
2586 Male, age 75, left hemisphere 17.1
2828 Female, age 72, unknown 16.7
2219 Male, age 76, both hemispheres 14.8
1827 Male, age 72, unknown 14.4
2019 Male, age 18, unknown 12.2
2411 Female, age 72, unknown 11.8
1833 Male, age 53, unknown 9.3
1870 Female, age 42, unknown 9.2
1830 Male, age 51, unknown 8.6
Dorsal raphe nucleus
nTPM: 11.7
2298 Female, age 72, unknown 14.1
2750 Male, age 76, both hemispheres 13.9
1828 Male, age 53, unknown 10.9
2047 Male, age 72, unknown 10.5
2016 Female, age 72, unknown 9.2
Inferior colliculus
nTPM: 9.4
2097 Female, age 72, unknown 12.5
1890 Male, age 53, unknown 10.3
2849 Male, age 72, unknown 7.4
1848 Female, age 42, unknown 7.3
Median raphe nucleus
nTPM: 13.6
2220 Male, age 76, midline 13.6
Periaquaductal grey, anterior
nTPM: 12.6
1795 Male, age 51, unknown 17.0
1947 Male, age 18, unknown 11.0
2502 Female, age 75, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 10.7
1831 Male, age 72, unknown 14.1
1840 Male, age 53, unknown 10.9
2464 Female, age 72, unknown 9.6
2850 Male, age 76, both hemispheres 8.2
Periaquaductal grey, lateral
nTPM: 10.5
2053 Male, age 18, unknown 11.9
2272 Male, age 74, both hemispheres 10.6
2140 Male, age 76, both hemispheres 9.1
Pretectal area
nTPM: 16.5
1816 Male, age 51, unknown 28.1
1817 Female, age 42, unknown 22.8
2007 Male, age 72, unknown 22.8
1815 Male, age 53, unknown 21.7
1944 Female, age 72, unknown 21.7
2407 Male, age 75, both hemispheres 12.7
2224 Female, age 72, unknown 12.1
2825 Male, age 18, unknown 11.1
2667 Female, age 75, unknown 10.3
2273 Male, age 74, both hemispheres 9.2
2316 Male, age 76, right hemisphere 9.1
Red nucleus
nTPM: 10.2
2584 Male, age 75, left hemisphere 18.3
2785 Male, age 18, unknown 13.4
2725 Female, age 75, unknown 10.9
1904 Male, age 53, unknown 10.1
2503 Female, age 72, unknown 10.1
2769 Male, age 72, unknown 9.6
2823 Male, age 76, right hemisphere 9.1
1821 Female, age 72, unknown 8.7
1954 Female, age 42, unknown 8.6
2588 Male, age 74, left hemisphere 8.6
2227 Male, age 72, unknown 8.0
1865 Male, age 51, unknown 7.0
Substantia nigra
nTPM: 17.3
1916 Female, age 42, unknown 22.7
2583 Male, age 75, right hemisphere 20.2
2590 Female, age 75, unknown 18.7
1889 Female, age 72, unknown 18.5
2665 Male, age 74, both hemispheres 18.4
1851 Male, age 51, unknown 18.2
2409 Female, age 72, unknown 16.5
2241 Male, age 72, unknown 13.8
1941 Male, age 53, unknown 13.2
2699 Male, age 18, unknown 12.5
Superior colliculus
nTPM: 15.0
2668 Female, age 75, unknown 21.8
2261 Male, age 18, unknown 20.5
2087 Female, age 72, unknown 20.3
1796 Male, age 53, unknown 15.8
1913 Female, age 42, unknown 14.6
2664 Male, age 75, both hemispheres 13.8
1995 Male, age 72, unknown 13.5
2587 Male, age 74, left hemisphere 10.2
1839 Male, age 51, unknown 9.7
1895 Male, age 76, right hemisphere 9.3
Ventral tegmental area
nTPM: 14.7
1942 Male, age 51, unknown 15.9
1915 Female, age 42, unknown 15.4
2218 Male, age 76, both hemispheres 15.4
2410 Female, age 72, unknown 15.1
2021 Male, age 53, unknown 14.8
2223 Female, age 72, unknown 11.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 139

Max nTPM: 16.8
Min nTPM: 3.6
Std nTPM: 2.5
Median nTPM: 8.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 16.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 16.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 15.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 14.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 14.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 13.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 13.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 13.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 13.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 12.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 12.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.8
FF:10158-103A5 76 years, female 15.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.9
Samples: 4

Max nTPM: 13.8
Min nTPM: 6.9
Sample A Female 13.8
Sample B Female 8.9
Sample C Male 13.8
Sample D Male 6.9
Midbrain
nTPM: 11.1
Samples: 4

Max nTPM: 17.9
Min nTPM: 7.8
Sample A Female 8.9
Sample B Female 9.7
Sample C Male 17.9
Sample D Male 7.8
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 10.1
Min nTPM: 7.3
Sample B Female 7.5
Sample C Male 10.1
Sample D Male 7.3
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 16.1
Min nTPM: 7.9
Sample A Female 8.1
Sample B Female 7.9
Sample C Male 16.1
Sample D Male 8.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 12.3
Min nTPM: 11.3
Sample A Male 12.3
Sample B Male 11.7
Sample C Female 11.3
Sample D Female 11.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68637545 Antisense, RP_050126_01_B03, Mouse strain C57BL/6J (56 days, male) 0.6

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