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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NME3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
75.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
67.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
62.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
58.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
58.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
55.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
52.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
50.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
46.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
46.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
43.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
41.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
39.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
38.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
37.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
36.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
35.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
29.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NME3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.6
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
103.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
98.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
93.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
83.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
76.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
76.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
74.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
73.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
71.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
68.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
67.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
66.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
64.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
64.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
57.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
57.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
54.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
54.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
51.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
51.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
50.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
49.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
47.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
46.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
43.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
43.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
42.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
39.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
39.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
37.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
36.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
30.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
28.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.7
571
Tumor
1.5
231
Tumor
1.3
423
Tumor
1.3
615
Tumor
1.1
627
Tumor
1.1
365
Tumor
1.0
361
Tumor
0.9
663
Tumor
0.9
357
Tumor
0.9
393
Tumor
0.8
911
Tumor
0.8
867
Tumor
0.8
411
Tumor
0.8
513
Tumor
0.8
473
Tumor
0.7
427
Tumor
0.7
915
Tumor
0.7
535
Tumor
0.6
1041
Tumor
0.6
451
Tumor
0.6
341
Tumor
0.5
171
Tumor
0.5
145
Tumor
0.5
383
Tumor
0.5
351
Tumor
0.5
127
Tumor
0.4
515
Tumor
0.4
1027
Tumor
0.4
267
Tumor
0.4
191
Tumor
0.4
533
Tumor
0.4
424
Normal
0.4
465
Tumor
0.4
715
Tumor
0.4
813
Tumor
0.4
461
Tumor
0.4
741
Tumor
0.4
358
Normal
0.3
685
Tumor
0.3
665
Tumor
0.3
666
Normal
0.3
873
Tumor
0.3
523
Tumor
0.3
664
Normal
0.3
414
Normal
0.3
161
Tumor
0.3
573
Tumor
0.3
297
Tumor
0.3
452
Normal
0.3
443
Tumor
0.3
525
Tumor
0.3
431
Tumor
0.3
635
Tumor
0.3
743
Tumor
0.3
662
Normal
0.3
354
Normal
0.3
277
Tumor
0.3
527
Tumor
0.3
113
Tumor
0.3
436
Normal
0.2
642
Normal
0.2
618
Normal
0.2
352
Normal
0.2
342
Normal
0.2
428
Normal
0.2
353
Tumor
0.2
636
Normal
0.2
344
Normal
0.2
195
Tumor
0.2
785
Tumor
0.2
222
Normal
0.2
913
Tumor
0.2
721
Tumor
0.2
391
Tumor
0.2
977
Tumor
0.2
883
Tumor
0.2
713
Tumor
0.2
327
Tumor
0.2
138
Normal
0.2
426
Normal
0.2
314
Normal
0.2
172
Normal
0.2
672
Normal
0.2
964
Normal
0.2
258
Normal
0.2
367
Tumor
0.2
196
Normal
0.1
922
Normal
0.1
572
Normal
0.1
192
Normal
0.1
487
Tumor
0.1
422
Normal
0.1
444
Normal
0.1
268
Normal
0.1
132
Normal
0.1
262
Normal
0.1
114
Normal
0.1
814
Normal
0.1
146
Normal
0.1
464
Normal
0.1
564
Normal
0.1
917
Tumor
0.1
874
Normal
0.1
415
Tumor
0.1
628
Normal
0.1
278
Normal
0.1
392
Normal
0.1
1015
Tumor
0.1
218
Normal
0.1
272
Normal
0.1
214
Normal
0.1
824
Normal
0.1
786
Normal
0.1
185
Tumor
0.1
128
Normal
0.1
433
Tumor
0.1
394
Normal
0.1
395
Tumor
0.1
468
Normal
0.1
332
Normal
0.1
136
Normal
0.1
554
Normal
0.1
861
Tumor
0.1
124
Normal
0.1
112
Tumor
0.1
396
Normal
0.1
388
Normal
0.1
746
Normal
0.1
912
Normal
0.1
937
Tumor
0.1
456
Normal
0.1
884
Normal
0.1
976
Normal
0.1
616
Normal
0.0
744
Normal
0.0
574
Normal
0.0
432
Normal
0.0
413
Tumor
0.0
526
Normal
0.0
434
Normal
0.0
777
Tumor
0.0
387
Tumor
0.0
926
Normal
0.0
186
Normal
0.0
686
Normal
0.0
857
Tumor
0.0
368
Normal
0.0
716
Normal
0.0
868
Normal
0.0
356
Normal
0.0
558
Normal
0.0
963
Tumor
0.0
111
Normal
0.0
516
Normal
0.0
568
Normal
0.0
723
Tumor
0.0
882
Normal
0.0
742
Normal
0.0
446
Normal
0.0
864
Normal
0.0
1013
Tumor
0.0
517
Tumor
0.0
563
Tumor
0.0
968
Normal
0.0
1045
Tumor
0.0
745
Tumor
0.0
918
Normal
0.0
462
Normal
0.0
866
Normal
0.0
386
Normal
0.0
421
Tumor
0.0
862
Normal
0.0
722
Normal
0.0
1014
Normal
0.0
878
Normal
0.0
343
Tumor
0.0
958
Normal
0.0
966
Normal
0.0
695
Tumor
0.0
455
Tumor
0.0
137
Tumor
0.0
312
Normal
0.0
187
Tumor
0.0
648
Normal
0.0
881
Tumor
0.0
982
Normal
0.0
232
Normal
0.0
298
Normal
0.0
366
Normal
0.0
714
Normal
0.0
924
Normal
0.0
362
Normal
0.0
557
Tumor
0.0
467
Tumor
-0.1
852
Normal
-0.1
311
Tumor
-0.1
698
Normal
-0.1
483
Tumor
-0.1
738
Normal
-0.1
818
Normal
-0.1
257
Tumor
-0.1
448
Normal
-0.1
313
Tumor
-0.1
916
Normal
-0.1
141
Tumor
-0.1
1016
Normal
-0.1
497
Tumor
-0.1
286
Normal
-0.1
188
Normal
-0.1
1022
Normal
-0.1
148
Normal
-0.1
213
Tumor
-0.1
914
Normal
-0.1
1026
Normal
-0.1
224
Normal
-0.1
135
Tumor
-0.1
755
Tumor
-0.1
981
Tumor
-0.1
944
Normal
-0.1
494
Normal
-0.1
416
Normal
-0.1
284
Normal
-0.1
756
Normal
-0.1
142
Normal
-0.1
954
Normal
-0.1
923
Tumor
-0.1
1046
Normal
-0.1
484
Normal
-0.1
482
Normal
-0.1
984
Normal
-0.1
376
Normal
-0.1
223
Tumor
-0.1
1042
Normal
-0.1
953
Tumor
-0.1
328
Normal
-0.1
546
Normal
-0.1
481
Tumor
-0.1
435
Tumor
-0.1
524
Normal
-0.1
355
Tumor
-0.1
877
Tumor
-0.1
1028
Normal
-0.1
212
Normal
-0.1
1044
Normal
-0.2
474
Normal
-0.2
445
Tumor
-0.2
478
Normal
-0.2
518
Normal
-0.2
978
Normal
-0.2
217
Tumor
-0.2
493
Tumor
-0.2
472
Normal
-0.2
538
Normal
-0.2
228
Normal
-0.2
957
Tumor
-0.2
492
Normal
-0.2
221
Tumor
-0.2
778
Normal
-0.2
463
Tumor
-0.2
412
Normal
-0.2
938
Normal
-0.2
952
Normal
-0.2
534
Normal
-0.2
671
Tumor
-0.2
823
Tumor
-0.2
514
Normal
-0.2
728
Normal
-0.2
858
Normal
-0.2
162
Normal
-0.2
1021
Tumor
-0.2
983
Tumor
-0.2
384
Normal
-0.2
364
Normal
-0.2
528
Normal
-0.3
211
Tumor
-0.3
498
Normal
-0.3
466
Normal
-0.3
617
Tumor
-0.3
491
Tumor
-0.3
126
Normal
-0.3
536
Normal
-0.3
697
Tumor
-0.3
261
Tumor
-0.3
661
Tumor
-0.3
385
Tumor
-0.3
271
Tumor
-0.3
331
Tumor
-0.3
727
Tumor
-0.3
943
Tumor
-0.3
1043
Tumor
-0.3
641
Tumor
-0.3
447
Tumor
-0.3
724
Normal
-0.4
816
Normal
-0.4
696
Normal
-0.4
863
Tumor
-0.4
865
Tumor
-0.4
125
Tumor
-0.4
123
Tumor
-0.4
975
Tumor
-0.4
227
Tumor
-0.5
921
Tumor
-0.5
471
Tumor
-0.5
488
Normal
-0.5
1032
Normal
-0.5
285
Tumor
-0.5
647
Tumor
-0.5
815
Tumor
-0.6
737
Tumor
-0.6
147
Tumor
-0.6
425
Tumor
-0.6
363
Tumor
-0.7
955
Tumor
-0.7
553
Tumor
-0.7
375
Tumor
-0.7
851
Tumor
-0.7
131
Tumor
-0.7
283
Tumor
-0.7
477
Tumor
-0.7
545
Tumor
-0.7
951
Tumor
-0.7
1031
Tumor
-0.8
956
Normal
-0.8
1025
Tumor
-0.8
817
Tumor
-0.9
567
Tumor
-0.9
537
Tumor
-0.9
965
Tumor
-1.0
967
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
