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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLR2C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
125.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
122.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
115.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
108.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
107.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
93.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
84.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
84.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
76.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
76.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
74.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
72.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
72.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
72.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
72.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
69.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
67.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
66.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
65.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
63.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
62.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
61.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
60.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
59.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
59.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
58.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
58.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
57.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
57.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
57.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
56.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
56.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
56.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
56.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
55.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
55.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
54.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
54.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
53.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
53.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
50.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
50.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
49.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
49.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
48.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
48.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
47.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
47.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
46.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
46.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
44.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
43.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
43.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
42.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
42.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
41.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
41.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
39.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
39.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
39.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
38.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
38.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
38.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
37.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
37.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
36.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
36.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
36.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
34.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
30.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
27.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
25.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLR2C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.4
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
76.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
73.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
67.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
67.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
65.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
60.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
60.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
58.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
56.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
56.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
56.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
55.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
54.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
53.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
52.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
52.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
51.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
51.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
50.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
49.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
49.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
49.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
47.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
47.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
43.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
42.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
41.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
41.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
41.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
39.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
39.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
38.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
38.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
38.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
37.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
37.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
37.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
34.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
33.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
31.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
26.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.8
661
Tumor
0.7
367
Tumor
0.7
743
Tumor
0.6
131
Tumor
0.5
1021
Tumor
0.5
497
Tumor
0.5
285
Tumor
0.5
695
Tumor
0.5
727
Tumor
0.5
951
Tumor
0.4
967
Tumor
0.4
425
Tumor
0.4
545
Tumor
0.4
277
Tumor
0.4
1031
Tumor
0.4
487
Tumor
0.4
473
Tumor
0.4
355
Tumor
0.4
724
Normal
0.4
937
Tumor
0.3
463
Tumor
0.3
517
Tumor
0.3
443
Tumor
0.3
865
Tumor
0.3
921
Tumor
0.3
413
Tumor
0.3
123
Tumor
0.3
351
Tumor
0.3
112
Tumor
0.3
283
Tumor
0.3
1041
Tumor
0.3
527
Tumor
0.3
533
Tumor
0.3
211
Tumor
0.3
715
Tumor
0.3
975
Tumor
0.3
331
Tumor
0.3
983
Tumor
0.3
813
Tumor
0.3
431
Tumor
0.3
524
Normal
0.3
1025
Tumor
0.3
341
Tumor
0.3
411
Tumor
0.3
391
Tumor
0.2
553
Tumor
0.2
433
Tumor
0.2
861
Tumor
0.2
445
Tumor
0.2
185
Tumor
0.2
977
Tumor
0.2
385
Tumor
0.2
571
Tumor
0.2
1015
Tumor
0.2
535
Tumor
0.2
221
Tumor
0.2
387
Tumor
0.2
981
Tumor
0.2
451
Tumor
0.2
917
Tumor
0.2
447
Tumor
0.2
647
Tumor
0.2
755
Tumor
0.2
231
Tumor
0.2
171
Tumor
0.2
713
Tumor
0.2
877
Tumor
0.2
483
Tumor
0.2
863
Tumor
0.2
493
Tumor
0.2
915
Tumor
0.2
665
Tumor
0.2
537
Tumor
0.2
227
Tumor
0.2
671
Tumor
0.2
363
Tumor
0.2
297
Tumor
0.2
271
Tumor
0.2
141
Tumor
0.2
471
Tumor
0.2
697
Tumor
0.2
477
Tumor
0.2
777
Tumor
0.2
955
Tumor
0.2
814
Normal
0.2
963
Tumor
0.1
356
Normal
0.1
881
Tumor
0.1
311
Tumor
0.1
858
Normal
0.1
737
Tumor
0.1
957
Tumor
0.1
867
Tumor
0.1
427
Tumor
0.1
923
Tumor
0.1
943
Tumor
0.1
528
Normal
0.1
261
Tumor
0.1
444
Normal
0.1
536
Normal
0.1
267
Tumor
0.1
455
Tumor
0.1
161
Tumor
0.1
635
Tumor
0.1
467
Tumor
0.1
925
Tumor
0.1
958
Normal
0.1
113
Tumor
0.1
1014
Normal
0.1
1045
Tumor
0.1
817
Tumor
0.1
913
Tumor
0.1
484
Normal
0.1
554
Normal
0.1
516
Normal
0.1
873
Tumor
0.1
217
Tumor
0.1
815
Tumor
0.1
916
Normal
0.1
513
Tumor
0.1
478
Normal
0.1
514
Normal
0.1
686
Normal
0.1
1013
Tumor
0.1
714
Normal
0.1
912
Normal
0.1
357
Tumor
0.1
492
Normal
0.1
412
Normal
0.1
313
Tumor
0.1
617
Tumor
0.1
721
Tumor
0.1
616
Normal
0.1
465
Tumor
0.1
364
Normal
0.1
434
Normal
0.1
964
Normal
0.1
978
Normal
0.1
573
Tumor
0.1
857
Tumor
0.1
926
Normal
0.1
332
Normal
0.1
685
Tumor
0.1
188
Normal
0.1
127
Tumor
0.0
663
Tumor
0.0
944
Normal
0.0
488
Normal
0.0
523
Tumor
0.0
498
Normal
0.0
423
Tumor
0.0
147
Tumor
0.0
976
Normal
0.0
785
Tumor
0.0
636
Normal
0.0
526
Normal
0.0
954
Normal
0.0
192
Normal
0.0
491
Tumor
0.0
278
Normal
0.0
383
Tumor
0.0
435
Tumor
0.0
696
Normal
0.0
1022
Normal
0.0
298
Normal
0.0
878
Normal
0.0
415
Tumor
0.0
375
Tumor
0.0
924
Normal
0.0
187
Tumor
0.0
741
Tumor
0.0
1043
Tumor
0.0
984
Normal
0.0
525
Tumor
0.0
146
Normal
0.0
823
Tumor
0.0
414
Normal
0.0
538
Normal
0.0
557
Tumor
0.0
956
Normal
0.0
213
Tumor
0.0
953
Tumor
0.0
314
Normal
0.0
482
Normal
0.0
922
Normal
0.0
1027
Tumor
0.0
352
Normal
0.0
162
Normal
0.0
952
Normal
0.0
567
Tumor
0.0
966
Normal
0.0
494
Normal
0.0
196
Normal
0.0
818
Normal
0.0
716
Normal
0.0
938
Normal
0.0
284
Normal
0.0
852
Normal
0.0
1032
Normal
0.0
1042
Normal
0.0
138
Normal
0.0
426
Normal
0.0
778
Normal
0.0
515
Tumor
0.0
728
Normal
0.0
416
Normal
0.0
353
Tumor
0.0
918
Normal
-0.1
312
Normal
-0.1
268
Normal
-0.1
361
Tumor
-0.1
257
Tumor
-0.1
982
Normal
-0.1
344
Normal
-0.1
212
Normal
-0.1
558
Normal
-0.1
114
Normal
-0.1
228
Normal
-0.1
195
Tumor
-0.1
395
Tumor
-0.1
191
Tumor
-0.1
358
Normal
-0.1
384
Normal
-0.1
468
Normal
-0.1
572
Normal
-0.1
786
Normal
-0.1
464
Normal
-0.1
756
Normal
-0.1
481
Tumor
-0.1
432
Normal
-0.1
672
Normal
-0.1
722
Normal
-0.1
421
Tumor
-0.1
968
Normal
-0.1
824
Normal
-0.1
534
Normal
-0.1
436
Normal
-0.1
393
Tumor
-0.1
883
Tumor
-0.1
128
Normal
-0.1
914
Normal
-0.1
744
Normal
-0.1
568
Normal
-0.1
218
Normal
-0.1
1016
Normal
-0.1
518
Normal
-0.1
328
Normal
-0.1
546
Normal
-0.1
172
Normal
-0.1
214
Normal
-0.1
362
Normal
-0.1
461
Tumor
-0.1
868
Normal
-0.1
186
Normal
-0.1
466
Normal
-0.1
563
Tumor
-0.1
124
Normal
-0.1
698
Normal
-0.1
884
Normal
-0.1
342
Normal
-0.1
1044
Normal
-0.1
1026
Normal
-0.1
126
Normal
-0.1
428
Normal
-0.1
474
Normal
-0.1
354
Normal
-0.1
1028
Normal
-0.1
851
Tumor
-0.1
224
Normal
-0.1
137
Tumor
-0.1
376
Normal
-0.1
618
Normal
-0.1
864
Normal
-0.1
145
Tumor
-0.1
664
Normal
-0.1
223
Tumor
-0.1
136
Normal
-0.1
222
Normal
-0.1
574
Normal
-0.1
1046
Normal
-0.1
142
Normal
-0.1
462
Normal
-0.2
424
Normal
-0.2
862
Normal
-0.2
327
Tumor
-0.2
874
Normal
-0.2
472
Normal
-0.2
148
Normal
-0.2
746
Normal
-0.2
422
Normal
-0.2
666
Normal
-0.2
641
Tumor
-0.2
882
Normal
-0.2
662
Normal
-0.2
135
Tumor
-0.2
628
Normal
-0.2
343
Tumor
-0.2
125
Tumor
-0.2
745
Tumor
-0.2
456
Normal
-0.2
448
Normal
-0.2
911
Tumor
-0.2
627
Tumor
-0.2
365
Tumor
-0.2
452
Normal
-0.2
366
Normal
-0.2
446
Normal
-0.2
816
Normal
-0.2
648
Normal
-0.2
866
Normal
-0.2
615
Tumor
-0.2
272
Normal
-0.2
723
Tumor
-0.2
132
Normal
-0.2
394
Normal
-0.2
742
Normal
-0.2
286
Normal
-0.2
111
Normal
-0.2
388
Normal
-0.2
564
Normal
-0.2
262
Normal
-0.2
258
Normal
-0.2
232
Normal
-0.3
386
Normal
-0.3
368
Normal
-0.3
392
Normal
-0.3
738
Normal
-0.3
396
Normal
-0.3
642
Normal
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
