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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARL2BP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
67.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
66.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
66.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
57.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
55.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
54.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
52.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
50.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
46.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
42.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
42.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
40.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
40.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
34.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
26.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARL2BP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.1
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
47.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
46.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
43.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
41.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
39.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
1.5
777
Tumor
1.1
445
Tumor
1.0
147
Tumor
0.9
433
Tumor
0.9
387
Tumor
0.9
192
Normal
0.8
648
Normal
0.8
911
Tumor
0.7
268
Normal
0.7
627
Tumor
0.7
413
Tumor
0.7
666
Normal
0.7
527
Tumor
0.7
661
Tumor
0.6
724
Normal
0.6
913
Tumor
0.6
664
Normal
0.6
557
Tumor
0.6
136
Normal
0.6
444
Normal
0.6
617
Tumor
0.5
741
Tumor
0.5
272
Normal
0.5
867
Tumor
0.5
262
Normal
0.5
977
Tumor
0.5
132
Normal
0.5
745
Tumor
0.5
222
Normal
0.5
481
Tumor
0.4
258
Normal
0.4
267
Tumor
0.4
813
Tumor
0.4
391
Tumor
0.4
883
Tumor
0.4
662
Normal
0.4
217
Tumor
0.4
814
Normal
0.4
358
Normal
0.4
344
Normal
0.4
138
Normal
0.4
231
Tumor
0.4
386
Normal
0.4
573
Tumor
0.4
663
Tumor
0.4
647
Tumor
0.4
145
Tumor
0.4
464
Normal
0.4
327
Tumor
0.4
113
Tumor
0.3
425
Tumor
0.3
914
Normal
0.3
213
Tumor
0.3
188
Normal
0.3
976
Normal
0.3
451
Tumor
0.3
342
Normal
0.3
172
Normal
0.3
146
Normal
0.3
232
Normal
0.3
214
Normal
0.3
196
Normal
0.3
434
Normal
0.3
874
Normal
0.3
746
Normal
0.3
452
Normal
0.3
393
Tumor
0.3
952
Normal
0.3
436
Normal
0.3
427
Tumor
0.3
311
Tumor
0.3
171
Tumor
0.3
354
Normal
0.3
162
Normal
0.3
965
Tumor
0.3
672
Normal
0.3
951
Tumor
0.2
975
Tumor
0.2
127
Tumor
0.2
312
Normal
0.2
383
Tumor
0.2
744
Normal
0.2
474
Normal
0.2
148
Normal
0.2
111
Normal
0.2
395
Tumor
0.2
513
Tumor
0.2
114
Normal
0.2
1028
Normal
0.2
365
Tumor
0.2
628
Normal
0.2
461
Tumor
0.2
721
Tumor
0.2
123
Tumor
0.2
492
Normal
0.2
642
Normal
0.2
456
Normal
0.2
685
Tumor
0.2
218
Normal
0.2
396
Normal
0.2
618
Normal
0.2
963
Tumor
0.2
563
Tumor
0.2
424
Normal
0.2
446
Normal
0.2
283
Tumor
0.2
186
Normal
0.2
554
Normal
0.2
866
Normal
0.2
191
Tumor
0.2
955
Tumor
0.2
277
Tumor
0.2
468
Normal
0.2
1045
Tumor
0.2
124
Normal
0.2
738
Normal
0.2
314
Normal
0.2
616
Normal
0.1
394
Normal
0.1
388
Normal
0.1
574
Normal
0.1
528
Normal
0.1
881
Tumor
0.1
352
Normal
0.1
426
Normal
0.1
187
Tumor
0.1
161
Tumor
0.1
462
Normal
0.1
742
Normal
0.1
432
Normal
0.1
271
Tumor
0.1
126
Normal
0.1
278
Normal
0.1
878
Normal
0.1
414
Normal
0.1
786
Normal
0.1
463
Tumor
0.1
967
Tumor
0.1
1015
Tumor
0.1
493
Tumor
0.1
671
Tumor
0.1
428
Normal
0.1
298
Normal
0.1
714
Normal
0.1
466
Normal
0.1
141
Tumor
0.1
713
Tumor
0.1
467
Tumor
0.1
368
Normal
0.1
366
Normal
0.1
968
Normal
0.1
422
Normal
0.1
128
Normal
0.0
568
Normal
0.0
447
Tumor
0.0
868
Normal
0.0
286
Normal
0.0
546
Normal
0.0
824
Normal
0.0
284
Normal
0.0
816
Normal
0.0
924
Normal
0.0
484
Normal
0.0
538
Normal
0.0
297
Tumor
0.0
722
Normal
0.0
723
Tumor
0.0
1022
Normal
0.0
416
Normal
0.0
353
Tumor
0.0
185
Tumor
0.0
376
Normal
0.0
392
Normal
0.0
873
Tumor
0.0
558
Normal
0.0
917
Tumor
0.0
564
Normal
0.0
421
Tumor
0.0
884
Normal
0.0
261
Tumor
0.0
518
Normal
0.0
912
Normal
0.0
341
Tumor
0.0
195
Tumor
0.0
534
Normal
0.0
864
Normal
-0.1
362
Normal
-0.1
545
Tumor
-0.1
852
Normal
-0.1
571
Tumor
-0.1
857
Tumor
-0.1
716
Normal
-0.1
755
Tumor
-0.1
858
Normal
-0.1
778
Normal
-0.1
665
Tumor
-0.1
882
Normal
-0.1
491
Tumor
-0.1
818
Normal
-0.1
498
Normal
-0.1
332
Normal
-0.1
1027
Tumor
-0.1
953
Tumor
-0.1
728
Normal
-0.1
635
Tumor
-0.1
465
Tumor
-0.1
1046
Normal
-0.1
1041
Tumor
-0.1
966
Normal
-0.1
862
Normal
-0.1
517
Tumor
-0.1
483
Tumor
-0.1
351
Tumor
-0.1
331
Tumor
-0.1
228
Normal
-0.1
478
Normal
-0.1
696
Normal
-0.1
448
Normal
-0.2
572
Normal
-0.2
212
Normal
-0.2
482
Normal
-0.2
515
Tumor
-0.2
943
Tumor
-0.2
423
Tumor
-0.2
125
Tumor
-0.2
361
Tumor
-0.2
861
Tumor
-0.2
536
Normal
-0.2
785
Tumor
-0.2
1016
Normal
-0.2
142
Normal
-0.2
636
Normal
-0.2
1044
Normal
-0.2
715
Tumor
-0.2
526
Normal
-0.2
477
Tumor
-0.2
472
Normal
-0.2
224
Normal
-0.2
697
Tumor
-0.2
956
Normal
-0.2
553
Tumor
-0.2
356
Normal
-0.2
958
Normal
-0.2
137
Tumor
-0.2
851
Tumor
-0.3
916
Normal
-0.3
385
Tumor
-0.3
567
Tumor
-0.3
698
Normal
-0.3
384
Normal
-0.3
918
Normal
-0.3
221
Tumor
-0.3
285
Tumor
-0.3
516
Normal
-0.3
964
Normal
-0.3
514
Normal
-0.3
494
Normal
-0.3
415
Tumor
-0.3
488
Normal
-0.3
313
Tumor
-0.3
135
Tumor
-0.3
954
Normal
-0.3
938
Normal
-0.3
921
Tumor
-0.3
1025
Tumor
-0.3
1026
Normal
-0.3
375
Tumor
-0.3
865
Tumor
-0.3
328
Normal
-0.3
981
Tumor
-0.4
112
Tumor
-0.4
957
Tumor
-0.4
1043
Tumor
-0.4
1032
Normal
-0.4
944
Normal
-0.4
686
Normal
-0.4
1042
Normal
-0.4
412
Normal
-0.4
487
Tumor
-0.4
455
Tumor
-0.4
727
Tumor
-0.4
211
Tumor
-0.4
524
Normal
-0.4
984
Normal
-0.4
257
Tumor
-0.4
756
Normal
-0.4
615
Tumor
-0.4
743
Tumor
-0.4
364
Normal
-0.4
535
Tumor
-0.5
1014
Normal
-0.5
533
Tumor
-0.5
343
Tumor
-0.5
525
Tumor
-0.5
497
Tumor
-0.5
737
Tumor
-0.5
1031
Tumor
-0.5
982
Normal
-0.5
877
Tumor
-0.5
923
Tumor
-0.5
443
Tumor
-0.5
367
Tumor
-0.5
223
Tumor
-0.6
357
Tumor
-0.6
641
Tumor
-0.6
537
Tumor
-0.6
1021
Tumor
-0.6
922
Normal
-0.6
823
Tumor
-0.6
363
Tumor
-0.7
471
Tumor
-0.7
523
Tumor
-0.7
978
Normal
-0.7
915
Tumor
-0.8
815
Tumor
-0.8
925
Tumor
-0.8
817
Tumor
-0.8
355
Tumor
-0.8
435
Tumor
-0.8
131
Tumor
-0.8
431
Tumor
-0.8
926
Normal
-0.8
227
Tumor
-0.9
695
Tumor
-0.9
937
Tumor
-0.9
1013
Tumor
-0.9
411
Tumor
-1.0
983
Tumor
-1.1
473
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.