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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LONP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
72.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
70.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
63.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
63.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
62.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
60.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
57.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
55.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
53.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
47.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
47.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
46.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
43.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
42.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
42.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
41.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
40.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
39.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
39.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
38.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
37.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
30.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LONP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.4
Number of samples
231
Samples
Sample
Description
TPM
DO48727
0 years, female, NA, stage:2, dead, 390 days
80.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
68.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
60.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
59.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
59.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
55.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
50.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
49.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
46.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
45.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
41.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
40.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
39.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
39.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
37.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
36.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
35.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
34.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
33.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.0
363
Tumor
0.9
533
Tumor
0.9
1027
Tumor
0.8
436
Normal
0.8
513
Tumor
0.7
981
Tumor
0.7
915
Tumor
0.7
777
Tumor
0.7
883
Tumor
0.6
423
Tumor
0.6
481
Tumor
0.6
358
Normal
0.6
411
Tumor
0.6
695
Tumor
0.6
955
Tumor
0.6
422
Normal
0.6
412
Normal
0.5
913
Tumor
0.5
227
Tumor
0.5
636
Normal
0.5
615
Tumor
0.5
365
Tumor
0.5
944
Normal
0.5
428
Normal
0.5
922
Normal
0.4
527
Tumor
0.4
616
Normal
0.4
911
Tumor
0.4
618
Normal
0.4
635
Tumor
0.4
186
Normal
0.4
222
Normal
0.4
477
Tumor
0.4
464
Normal
0.4
231
Tumor
0.4
416
Normal
0.4
862
Normal
0.4
148
Normal
0.4
884
Normal
0.4
111
Normal
0.4
258
Normal
0.4
912
Normal
0.4
746
Normal
0.4
523
Tumor
0.4
742
Normal
0.4
128
Normal
0.4
214
Normal
0.4
1041
Tumor
0.4
414
Normal
0.4
482
Normal
0.4
572
Normal
0.4
515
Tumor
0.4
755
Tumor
0.4
722
Normal
0.4
452
Normal
0.4
341
Tumor
0.4
424
Normal
0.3
1016
Normal
0.3
462
Normal
0.3
938
Normal
0.3
641
Tumor
0.3
172
Normal
0.3
648
Normal
0.3
982
Normal
0.3
514
Normal
0.3
926
Normal
0.3
426
Normal
0.3
465
Tumor
0.3
698
Normal
0.3
518
Normal
0.3
868
Normal
0.3
564
Normal
0.3
332
Normal
0.3
393
Tumor
0.3
448
Normal
0.3
432
Normal
0.3
356
Normal
0.3
964
Normal
0.3
466
Normal
0.3
228
Normal
0.3
954
Normal
0.3
978
Normal
0.3
132
Normal
0.3
878
Normal
0.3
968
Normal
0.3
388
Normal
0.3
1046
Normal
0.3
882
Normal
0.3
364
Normal
0.3
278
Normal
0.3
528
Normal
0.3
298
Normal
0.3
525
Tumor
0.3
127
Tumor
0.3
136
Normal
0.3
262
Normal
0.3
196
Normal
0.3
314
Normal
0.3
114
Normal
0.3
916
Normal
0.3
218
Normal
0.3
328
Normal
0.3
456
Normal
0.2
261
Tumor
0.2
342
Normal
0.2
568
Normal
0.2
1032
Normal
0.2
714
Normal
0.2
1022
Normal
0.2
232
Normal
0.2
1042
Normal
0.2
745
Tumor
0.2
816
Normal
0.2
357
Tumor
0.2
1014
Normal
0.2
433
Tumor
0.2
353
Tumor
0.2
918
Normal
0.2
286
Normal
0.2
664
Normal
0.2
446
Normal
0.2
628
Normal
0.2
484
Normal
0.2
824
Normal
0.2
546
Normal
0.2
858
Normal
0.2
557
Tumor
0.2
368
Normal
0.2
867
Tumor
0.2
738
Normal
0.2
361
Tumor
0.2
268
Normal
0.2
327
Tumor
0.2
785
Tumor
0.2
272
Normal
0.2
526
Normal
0.2
1021
Tumor
0.2
376
Normal
0.2
534
Normal
0.2
863
Tumor
0.2
723
Tumor
0.2
728
Normal
0.2
956
Normal
0.2
852
Normal
0.2
966
Normal
0.2
354
Normal
0.2
721
Tumor
0.2
224
Normal
0.2
924
Normal
0.2
642
Normal
0.2
384
Normal
0.2
914
Normal
0.2
362
Normal
0.2
571
Tumor
0.2
472
Normal
0.2
952
Normal
0.2
756
Normal
0.1
474
Normal
0.1
162
Normal
0.1
1028
Normal
0.1
818
Normal
0.1
187
Tumor
0.1
663
Tumor
0.1
786
Normal
0.1
864
Normal
0.1
468
Normal
0.1
451
Tumor
0.1
958
Normal
0.1
415
Tumor
0.1
142
Normal
0.1
1013
Tumor
0.1
494
Normal
0.1
145
Tumor
0.1
138
Normal
0.1
554
Normal
0.1
113
Tumor
0.1
524
Normal
0.1
538
Normal
0.1
716
Normal
0.1
1026
Normal
0.1
352
Normal
0.1
866
Normal
0.1
284
Normal
0.1
873
Tumor
0.1
124
Normal
0.1
1025
Tumor
0.1
857
Tumor
0.1
1044
Normal
0.1
394
Normal
0.1
874
Normal
0.1
984
Normal
0.1
666
Normal
0.1
137
Tumor
0.1
516
Normal
0.1
126
Normal
0.1
434
Normal
0.1
312
Normal
0.1
861
Tumor
0.1
662
Normal
0.1
558
Normal
0.1
212
Normal
0.1
366
Normal
0.0
171
Tumor
0.0
386
Normal
0.0
344
Normal
0.0
392
Normal
0.0
351
Tumor
0.0
396
Normal
0.0
188
Normal
0.0
778
Normal
0.0
696
Normal
0.0
953
Tumor
0.0
431
Tumor
0.0
147
Tumor
0.0
191
Tumor
0.0
574
Normal
0.0
1045
Tumor
0.0
112
Tumor
0.0
146
Normal
0.0
686
Normal
0.0
937
Tumor
0.0
487
Tumor
0.0
488
Normal
0.0
421
Tumor
0.0
672
Normal
0.0
976
Normal
0.0
478
Normal
0.0
257
Tumor
-0.1
195
Tumor
-0.1
685
Tumor
-0.1
727
Tumor
-0.1
977
Tumor
-0.1
444
Normal
-0.1
647
Tumor
-0.1
141
Tumor
-0.1
851
Tumor
-0.1
123
Tumor
-0.1
445
Tumor
-0.1
435
Tumor
-0.2
267
Tumor
-0.2
744
Normal
-0.2
553
Tumor
-0.2
461
Tumor
-0.2
741
Tumor
-0.2
921
Tumor
-0.2
1031
Tumor
-0.2
567
Tumor
-0.2
192
Normal
-0.2
443
Tumor
-0.2
965
Tumor
-0.2
617
Tumor
-0.2
957
Tumor
-0.3
313
Tumor
-0.3
491
Tumor
-0.3
493
Tumor
-0.3
217
Tumor
-0.3
573
Tumor
-0.3
563
Tumor
-0.3
135
Tumor
-0.3
537
Tumor
-0.3
492
Normal
-0.3
943
Tumor
-0.3
713
Tumor
-0.3
923
Tumor
-0.3
517
Tumor
-0.3
1015
Tumor
-0.3
355
Tumor
-0.4
498
Normal
-0.4
383
Tumor
-0.4
697
Tumor
-0.4
925
Tumor
-0.4
715
Tumor
-0.4
536
Normal
-0.4
223
Tumor
-0.4
185
Tumor
-0.4
951
Tumor
-0.4
427
Tumor
-0.4
737
Tumor
-0.4
471
Tumor
-0.4
271
Tumor
-0.4
814
Normal
-0.5
391
Tumor
-0.5
221
Tumor
-0.5
813
Tumor
-0.5
455
Tumor
-0.5
823
Tumor
-0.5
213
Tumor
-0.5
665
Tumor
-0.5
387
Tumor
-0.5
963
Tumor
-0.5
483
Tumor
-0.5
463
Tumor
-0.5
161
Tumor
-0.5
1043
Tumor
-0.5
447
Tumor
-0.5
467
Tumor
-0.5
865
Tumor
-0.5
277
Tumor
-0.5
967
Tumor
-0.6
413
Tumor
-0.6
881
Tumor
-0.6
395
Tumor
-0.6
877
Tumor
-0.6
125
Tumor
-0.6
817
Tumor
-0.6
425
Tumor
-0.7
473
Tumor
-0.7
375
Tumor
-0.7
367
Tumor
-0.7
297
Tumor
-0.7
975
Tumor
-0.7
815
Tumor
-0.7
343
Tumor
-0.7
545
Tumor
-0.7
535
Tumor
-0.7
331
Tumor
-0.8
983
Tumor
-0.8
311
Tumor
-0.8
211
Tumor
-0.8
497
Tumor
-0.8
917
Tumor
-0.9
285
Tumor
-0.9
131
Tumor
-0.9
671
Tumor
-0.9
283
Tumor
-0.9
724
Normal
-1.0
385
Tumor
-1.1
661
Tumor
-1.2
743
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.