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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CORO1A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
379.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
226.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
120.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
103.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
100.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
99.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
89.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
87.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
83.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
75.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
73.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
70.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
69.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
69.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
61.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
59.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
54.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
54.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
50.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
50.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
49.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
47.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
47.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
46.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
43.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
42.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
39.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CORO1A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
167.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
126.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
115.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
100.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
93.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
80.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
80.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
77.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
76.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
73.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
59.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
58.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
57.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
56.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
53.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
50.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
50.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
50.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
50.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
45.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
44.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
44.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
34.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
1.6
211
Tumor
1.4
492
Normal
1.1
311
Tumor
1.1
724
Normal
1.1
1031
Tumor
1.0
434
Normal
1.0
478
Normal
1.0
536
Normal
0.9
943
Tumor
0.9
661
Tumor
0.9
455
Tumor
0.9
721
Tumor
0.9
963
Tumor
0.9
966
Normal
0.9
823
Tumor
0.9
213
Tumor
0.8
916
Normal
0.8
192
Normal
0.8
444
Normal
0.8
185
Tumor
0.8
188
Normal
0.8
471
Tumor
0.8
524
Normal
0.8
975
Tumor
0.8
467
Tumor
0.7
713
Tumor
0.7
861
Tumor
0.7
125
Tumor
0.7
814
Normal
0.7
535
Tumor
0.7
491
Tumor
0.6
283
Tumor
0.6
978
Normal
0.6
447
Tumor
0.6
126
Normal
0.6
223
Tumor
0.6
383
Tumor
0.6
343
Tumor
0.6
385
Tumor
0.6
538
Normal
0.6
498
Normal
0.6
516
Normal
0.5
268
Normal
0.5
877
Tumor
0.5
195
Tumor
0.5
881
Tumor
0.5
375
Tumor
0.5
146
Normal
0.5
813
Tumor
0.5
212
Normal
0.4
976
Normal
0.4
716
Normal
0.4
262
Normal
0.4
857
Tumor
0.4
272
Normal
0.4
141
Tumor
0.4
852
Normal
0.4
686
Normal
0.4
817
Tumor
0.4
493
Tumor
0.4
362
Normal
0.4
224
Normal
0.4
386
Normal
0.4
697
Tumor
0.3
217
Tumor
0.3
461
Tumor
0.3
1042
Normal
0.3
563
Tumor
0.3
1043
Tumor
0.3
874
Normal
0.3
384
Normal
0.3
628
Normal
0.3
956
Normal
0.3
395
Tumor
0.3
312
Normal
0.3
191
Tumor
0.2
366
Normal
0.2
662
Normal
0.2
1015
Tumor
0.2
851
Tumor
0.2
421
Tumor
0.2
545
Tumor
0.2
816
Normal
0.2
815
Tumor
0.2
328
Normal
0.2
284
Normal
0.2
474
Normal
0.2
494
Normal
0.2
138
Normal
0.2
297
Tumor
0.1
364
Normal
0.1
958
Normal
0.1
142
Normal
0.1
573
Tumor
0.1
952
Normal
0.1
954
Normal
0.1
472
Normal
0.1
1028
Normal
0.1
913
Tumor
0.1
984
Normal
0.1
968
Normal
0.1
415
Tumor
0.1
914
Normal
0.1
867
Tumor
0.1
355
Tumor
0.1
1016
Normal
0.1
938
Normal
0.0
617
Tumor
0.0
778
Normal
0.0
926
Normal
0.0
574
Normal
0.0
918
Normal
0.0
365
Tumor
0.0
558
Normal
0.0
187
Tumor
0.0
1032
Normal
0.0
738
Normal
0.0
925
Tumor
0.0
1044
Normal
0.0
413
Tumor
0.0
396
Normal
0.0
671
Tumor
0.0
432
Normal
0.0
728
Normal
-0.1
468
Normal
-0.1
483
Tumor
-0.1
114
Normal
-0.1
514
Normal
-0.1
883
Tumor
-0.1
424
Normal
-0.1
518
Normal
-0.1
387
Tumor
-0.1
332
Normal
-0.1
983
Tumor
-0.1
858
Normal
-0.1
352
Normal
-0.1
866
Normal
-0.1
278
Normal
-0.1
428
Normal
-0.1
214
Normal
-0.1
868
Normal
-0.1
525
Tumor
-0.1
124
Normal
-0.1
1026
Normal
-0.1
488
Normal
-0.1
463
Tumor
-0.1
696
Normal
-0.1
818
Normal
-0.1
456
Normal
-0.1
392
Normal
-0.2
394
Normal
-0.2
228
Normal
-0.2
218
Normal
-0.2
367
Tumor
-0.2
145
Tumor
-0.2
412
Normal
-0.2
111
Normal
-0.2
727
Tumor
-0.2
937
Tumor
-0.2
136
Normal
-0.2
391
Tumor
-0.2
922
Normal
-0.2
924
Normal
-0.2
388
Normal
-0.2
714
Normal
-0.2
722
Normal
-0.2
664
Normal
-0.2
528
Normal
-0.2
446
Normal
-0.2
135
Tumor
-0.2
137
Tumor
-0.2
864
Normal
-0.2
824
Normal
-0.2
546
Normal
-0.2
363
Tumor
-0.2
982
Normal
-0.2
756
Normal
-0.3
786
Normal
-0.3
884
Normal
-0.3
422
Normal
-0.3
277
Tumor
-0.3
882
Normal
-0.3
416
Normal
-0.3
482
Normal
-0.3
1014
Normal
-0.3
744
Normal
-0.3
755
Tumor
-0.3
862
Normal
-0.3
344
Normal
-0.3
955
Tumor
-0.3
466
Normal
-0.3
258
Normal
-0.3
462
Normal
-0.3
666
Normal
-0.3
298
Normal
-0.3
526
Normal
-0.3
865
Tumor
-0.3
196
Normal
-0.3
785
Tumor
-0.3
464
Normal
-0.3
172
Normal
-0.3
715
Tumor
-0.4
742
Normal
-0.4
672
Normal
-0.4
1022
Normal
-0.4
161
Tumor
-0.4
723
Tumor
-0.4
878
Normal
-0.4
451
Tumor
-0.4
641
Tumor
-0.4
964
Normal
-0.4
286
Normal
-0.4
148
Normal
-0.4
232
Normal
-0.4
433
Tumor
-0.4
427
Tumor
-0.4
944
Normal
-0.4
564
Normal
-0.4
162
Normal
-0.4
534
Normal
-0.4
685
Tumor
-0.4
448
Normal
-0.4
951
Tumor
-0.4
221
Tumor
-0.4
354
Normal
-0.4
356
Normal
-0.4
222
Normal
-0.4
331
Tumor
-0.5
553
Tumor
-0.5
414
Normal
-0.5
698
Normal
-0.5
271
Tumor
-0.5
1045
Tumor
-0.5
358
Normal
-0.5
368
Normal
-0.5
967
Tumor
-0.5
376
Normal
-0.5
554
Normal
-0.5
915
Tumor
-0.5
1046
Normal
-0.5
443
Tumor
-0.5
426
Normal
-0.5
484
Normal
-0.5
128
Normal
-0.5
572
Normal
-0.6
921
Tumor
-0.6
912
Normal
-0.6
314
Normal
-0.6
616
Normal
-0.6
257
Tumor
-0.6
132
Normal
-0.6
227
Tumor
-0.6
186
Normal
-0.6
1025
Tumor
-0.6
568
Normal
-0.6
642
Normal
-0.6
923
Tumor
-0.6
341
Tumor
-0.6
648
Normal
-0.6
452
Normal
-0.6
746
Normal
-0.6
953
Tumor
-0.6
353
Tumor
-0.6
557
Tumor
-0.7
285
Tumor
-0.7
481
Tumor
-0.7
537
Tumor
-0.7
261
Tumor
-0.7
497
Tumor
-0.7
636
Normal
-0.7
487
Tumor
-0.7
351
Tumor
-0.7
342
Normal
-0.7
113
Tumor
-0.7
361
Tumor
-0.7
231
Tumor
-0.8
423
Tumor
-0.8
977
Tumor
-0.8
737
Tumor
-0.8
873
Tumor
-0.9
436
Normal
-0.9
618
Normal
-0.9
663
Tumor
-0.9
327
Tumor
-0.9
527
Tumor
-0.9
131
Tumor
-0.9
863
Tumor
-0.9
425
Tumor
-1.0
957
Tumor
-1.0
665
Tumor
-1.0
431
Tumor
-1.0
393
Tumor
-1.0
567
Tumor
-1.0
515
Tumor
-1.0
517
Tumor
-1.1
147
Tumor
-1.1
267
Tumor
-1.1
477
Tumor
-1.1
627
Tumor
-1.1
695
Tumor
-1.1
1041
Tumor
-1.1
911
Tumor
-1.1
127
Tumor
-1.2
513
Tumor
-1.2
571
Tumor
-1.2
313
Tumor
-1.2
1021
Tumor
-1.2
523
Tumor
-1.3
1027
Tumor
-1.3
171
Tumor
-1.3
473
Tumor
-1.3
965
Tumor
-1.3
1013
Tumor
-1.3
777
Tumor
-1.4
112
Tumor
-1.4
615
Tumor
-1.4
647
Tumor
-1.4
465
Tumor
-1.4
533
Tumor
-1.5
981
Tumor
-1.5
745
Tumor
-1.5
357
Tumor
-1.5
411
Tumor
-1.5
741
Tumor
-1.6
445
Tumor
-1.6
123
Tumor
-1.6
635
Tumor
-1.9
435
Tumor
-1.9
743
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
