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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRADD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
36.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRADD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.0
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
68.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
50.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.2
311
Tumor
0.7
147
Tumor
0.7
724
Normal
0.7
192
Normal
0.6
913
Tumor
0.6
627
Tumor
0.6
1015
Tumor
0.5
444
Normal
0.5
863
Tumor
0.5
741
Tumor
0.5
267
Tumor
0.5
414
Normal
0.5
171
Tumor
0.5
434
Normal
0.5
395
Tumor
0.5
217
Tumor
0.4
424
Normal
0.4
428
Normal
0.4
222
Normal
0.4
283
Tumor
0.4
446
Normal
0.4
383
Tumor
0.4
113
Tumor
0.4
777
Tumor
0.4
366
Normal
0.4
353
Tumor
0.4
422
Normal
0.4
268
Normal
0.4
456
Normal
0.4
386
Normal
0.4
137
Tumor
0.3
188
Normal
0.3
911
Tumor
0.3
426
Normal
0.3
455
Tumor
0.3
755
Tumor
0.3
697
Tumor
0.3
232
Normal
0.3
666
Normal
0.3
312
Normal
0.3
126
Normal
0.3
924
Normal
0.3
172
Normal
0.3
432
Normal
0.3
738
Normal
0.3
362
Normal
0.3
723
Tumor
0.3
214
Normal
0.3
628
Normal
0.3
384
Normal
0.3
258
Normal
0.3
477
Tumor
0.3
616
Normal
0.3
145
Tumor
0.3
365
Tumor
0.3
187
Tumor
0.3
196
Normal
0.3
721
Tumor
0.3
664
Normal
0.3
218
Normal
0.3
162
Normal
0.3
272
Normal
0.3
387
Tumor
0.3
257
Tumor
0.3
111
Normal
0.3
191
Tumor
0.3
648
Normal
0.3
358
Normal
0.3
1022
Normal
0.3
224
Normal
0.3
342
Normal
0.3
728
Normal
0.3
114
Normal
0.3
146
Normal
0.3
742
Normal
0.2
564
Normal
0.2
138
Normal
0.2
922
Normal
0.2
558
Normal
0.2
375
Tumor
0.2
278
Normal
0.2
262
Normal
0.2
436
Normal
0.2
354
Normal
0.2
1045
Tumor
0.2
125
Tumor
0.2
136
Normal
0.2
128
Normal
0.2
261
Tumor
0.2
536
Normal
0.2
926
Normal
0.2
464
Normal
0.2
572
Normal
0.2
468
Normal
0.2
186
Normal
0.2
527
Tumor
0.2
352
Normal
0.2
756
Normal
0.2
786
Normal
0.2
917
Tumor
0.2
916
Normal
0.2
858
Normal
0.2
951
Tumor
0.2
376
Normal
0.2
568
Normal
0.2
148
Normal
0.2
396
Normal
0.2
862
Normal
0.2
662
Normal
0.2
185
Tumor
0.2
714
Normal
0.2
343
Tumor
0.2
868
Normal
0.2
861
Tumor
0.2
466
Normal
0.2
368
Normal
0.2
284
Normal
0.2
744
Normal
0.2
392
Normal
0.2
968
Normal
0.2
142
Normal
0.2
132
Normal
0.2
124
Normal
0.2
958
Normal
0.2
976
Normal
0.2
298
Normal
0.2
112
Tumor
0.1
364
Normal
0.1
824
Normal
0.1
956
Normal
0.1
314
Normal
0.1
574
Normal
0.1
416
Normal
0.1
635
Tumor
0.1
448
Normal
0.1
746
Normal
0.1
816
Normal
0.1
852
Normal
0.1
478
Normal
0.1
864
Normal
0.1
388
Normal
0.1
912
Normal
0.1
966
Normal
0.1
918
Normal
0.1
975
Tumor
0.1
963
Tumor
0.1
394
Normal
0.1
451
Tumor
0.1
481
Tumor
0.1
818
Normal
0.1
722
Normal
0.1
462
Normal
0.1
867
Tumor
0.1
514
Normal
0.1
981
Tumor
0.1
882
Normal
0.1
1044
Normal
0.1
1042
Normal
0.1
356
Normal
0.1
344
Normal
0.1
661
Tumor
0.1
955
Tumor
0.1
228
Normal
0.1
642
Normal
0.1
672
Normal
0.1
1026
Normal
0.1
954
Normal
0.1
698
Normal
0.1
433
Tumor
0.1
952
Normal
0.1
332
Normal
0.1
914
Normal
0.1
563
Tumor
0.1
713
Tumor
0.1
327
Tumor
0.1
213
Tumor
0.1
212
Normal
0.1
636
Normal
0.1
778
Normal
0.1
361
Tumor
0.1
528
Normal
0.1
286
Normal
0.1
716
Normal
0.1
452
Normal
0.1
1046
Normal
0.1
195
Tumor
0.1
484
Normal
0.1
415
Tumor
0.1
141
Tumor
0.1
421
Tumor
0.1
535
Tumor
0.1
557
Tumor
0.0
978
Normal
0.0
412
Normal
0.0
1028
Normal
0.0
493
Tumor
0.0
488
Normal
0.0
686
Normal
0.0
328
Normal
0.0
866
Normal
0.0
964
Normal
0.0
938
Normal
0.0
617
Tumor
0.0
498
Normal
0.0
1032
Normal
0.0
618
Normal
0.0
474
Normal
0.0
221
Tumor
0.0
944
Normal
0.0
482
Normal
0.0
534
Normal
0.0
647
Tumor
0.0
715
Tumor
0.0
524
Normal
0.0
874
Normal
0.0
665
Tumor
0.0
231
Tumor
0.0
1014
Normal
0.0
211
Tumor
0.0
884
Normal
0.0
977
Tumor
0.0
271
Tumor
0.0
467
Tumor
0.0
472
Normal
0.0
546
Normal
0.0
445
Tumor
0.0
696
Normal
0.0
641
Tumor
0.0
443
Tumor
0.0
567
Tumor
0.0
297
Tumor
0.0
127
Tumor
0.0
492
Normal
0.0
865
Tumor
0.0
447
Tumor
0.0
785
Tumor
0.0
857
Tumor
0.0
1041
Tumor
0.0
881
Tumor
-0.1
516
Normal
-0.1
663
Tumor
-0.1
982
Normal
-0.1
937
Tumor
-0.1
814
Normal
-0.1
494
Normal
-0.1
223
Tumor
-0.1
1016
Normal
-0.1
943
Tumor
-0.1
427
Tumor
-0.1
135
Tumor
-0.1
518
Normal
-0.1
435
Tumor
-0.1
737
Tumor
-0.1
727
Tumor
-0.1
984
Normal
-0.1
851
Tumor
-0.1
423
Tumor
-0.1
483
Tumor
-0.1
461
Tumor
-0.1
823
Tumor
-0.1
878
Normal
-0.1
615
Tumor
-0.2
813
Tumor
-0.2
1043
Tumor
-0.2
745
Tumor
-0.2
313
Tumor
-0.2
123
Tumor
-0.2
526
Normal
-0.2
425
Tumor
-0.2
391
Tumor
-0.2
571
Tumor
-0.2
161
Tumor
-0.2
873
Tumor
-0.2
925
Tumor
-0.2
1013
Tumor
-0.2
573
Tumor
-0.2
883
Tumor
-0.3
277
Tumor
-0.3
817
Tumor
-0.3
341
Tumor
-0.3
465
Tumor
-0.3
497
Tumor
-0.3
411
Tumor
-0.3
471
Tumor
-0.3
1031
Tumor
-0.3
915
Tumor
-0.3
953
Tumor
-0.3
385
Tumor
-0.3
431
Tumor
-0.3
513
Tumor
-0.3
487
Tumor
-0.3
491
Tumor
-0.3
921
Tumor
-0.3
685
Tumor
-0.3
538
Normal
-0.3
331
Tumor
-0.3
131
Tumor
-0.3
554
Normal
-0.4
1025
Tumor
-0.4
355
Tumor
-0.4
367
Tumor
-0.4
413
Tumor
-0.4
351
Tumor
-0.4
463
Tumor
-0.4
1021
Tumor
-0.4
671
Tumor
-0.4
923
Tumor
-0.4
983
Tumor
-0.5
357
Tumor
-0.5
967
Tumor
-0.5
957
Tumor
-0.5
815
Tumor
-0.5
877
Tumor
-0.5
743
Tumor
-0.5
227
Tumor
-0.5
525
Tumor
-0.5
393
Tumor
-0.5
533
Tumor
-0.6
537
Tumor
-0.6
363
Tumor
-0.6
553
Tumor
-0.6
545
Tumor
-0.6
515
Tumor
-0.6
473
Tumor
-0.7
285
Tumor
-0.7
695
Tumor
-0.9
965
Tumor
-0.9
517
Tumor
-1.0
523
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
