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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSC22D1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
419.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
355.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
351.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
263.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
243.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
237.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
209.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
194.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
194.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
188.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
175.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
155.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
153.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
150.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
150.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
144.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
139.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
138.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
137.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
137.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
132.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
132.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
130.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
129.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
127.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
119.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
117.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
116.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
108.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
106.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
97.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
96.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
96.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
92.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
91.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
89.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
89.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
87.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
85.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
85.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
80.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
78.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
77.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
77.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
75.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
75.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
74.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
73.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
73.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
70.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
70.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
70.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
69.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
69.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
68.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
67.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
66.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
66.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
64.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
64.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
62.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
61.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
61.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
61.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
61.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
60.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
60.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
60.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
60.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
59.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
59.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
59.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
58.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
58.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
57.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
55.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
54.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
54.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
52.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
51.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
49.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
48.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
47.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
47.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
46.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
46.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
46.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
46.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
45.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
45.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
45.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
44.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
44.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
44.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
43.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
42.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
42.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
40.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
40.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
39.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
38.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
38.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
37.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
37.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
36.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
36.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
36.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
32.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
31.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
30.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSC22D1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
105.0
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
1269.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
595.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
513.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
429.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
410.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
389.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
347.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
345.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
340.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
293.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
287.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
267.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
257.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
245.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
242.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
239.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
227.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
227.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
218.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
211.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
208.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
205.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
196.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
185.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
184.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
180.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
180.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
179.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
178.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
174.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
173.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
170.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
168.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
162.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
161.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
159.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
157.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
153.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
150.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
149.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
144.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
143.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
142.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
138.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
137.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
135.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
134.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
133.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
131.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
130.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
130.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
129.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
127.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
125.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
124.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
124.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
123.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
117.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
114.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
111.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
111.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
110.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
109.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
108.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
108.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
107.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
107.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
107.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
105.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
104.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
103.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
103.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
102.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
101.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
100.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
100.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
100.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
100.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
99.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
99.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
99.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
98.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
98.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
97.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
96.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
90.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
89.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
89.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
89.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
88.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
88.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
88.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
87.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
86.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
86.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
86.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
86.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
86.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
86.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
83.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
82.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
82.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
81.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
81.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
80.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
80.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
80.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
79.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
79.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
78.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
77.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
76.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
76.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
76.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
76.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
76.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
75.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
75.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
74.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
74.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
74.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
74.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
74.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
74.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
73.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
73.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
72.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
72.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
72.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
71.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
71.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
70.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
70.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
68.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
68.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
67.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
67.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
66.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
64.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
64.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
63.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
63.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
62.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
62.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
61.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
60.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
60.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
60.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
60.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
59.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
59.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
59.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
59.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
58.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
58.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
57.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
57.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
57.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
57.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
56.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
56.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
56.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
55.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
55.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
55.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
53.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
53.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
52.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
52.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
52.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
52.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
50.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
49.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
49.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
49.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
48.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
47.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
47.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
47.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
45.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
45.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
44.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
43.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
43.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
43.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
43.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
42.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
40.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
39.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
36.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
2.0
715
Tumor
1.9
863
Tumor
1.6
915
Tumor
1.4
261
Tumor
1.4
911
Tumor
1.2
665
Tumor
1.2
1041
Tumor
1.1
451
Tumor
0.9
777
Tumor
0.7
981
Tumor
0.7
861
Tumor
0.7
481
Tumor
0.6
478
Normal
0.6
851
Tumor
0.6
741
Tumor
0.5
963
Tumor
0.5
685
Tumor
0.5
977
Tumor
0.5
983
Tumor
0.5
815
Tumor
0.5
515
Tumor
0.5
727
Tumor
0.5
471
Tumor
0.5
884
Normal
0.5
641
Tumor
0.4
755
Tumor
0.4
297
Tumor
0.4
516
Normal
0.4
714
Normal
0.4
472
Normal
0.4
518
Normal
0.4
484
Normal
0.4
867
Tumor
0.4
877
Tumor
0.4
546
Normal
0.4
965
Tumor
0.4
517
Tumor
0.4
1043
Tumor
0.4
363
Tumor
0.4
534
Normal
0.4
528
Normal
0.4
415
Tumor
0.4
483
Tumor
0.4
918
Normal
0.4
351
Tumor
0.3
524
Normal
0.3
364
Normal
0.3
492
Normal
0.3
743
Tumor
0.3
882
Normal
0.3
535
Tumor
0.3
331
Tumor
0.3
537
Tumor
0.3
545
Tumor
0.3
461
Tumor
0.3
874
Normal
0.3
1016
Normal
0.3
814
Normal
0.3
536
Normal
0.3
416
Normal
0.3
955
Tumor
0.3
554
Normal
0.3
448
Normal
0.3
1026
Normal
0.3
498
Normal
0.3
912
Normal
0.3
1046
Normal
0.3
447
Tumor
0.2
976
Normal
0.2
672
Normal
0.2
412
Normal
0.2
786
Normal
0.2
868
Normal
0.2
866
Normal
0.2
723
Tumor
0.2
864
Normal
0.2
482
Normal
0.2
957
Tumor
0.2
852
Normal
0.2
1021
Tumor
0.2
617
Tumor
0.2
921
Tumor
0.2
212
Normal
0.2
878
Normal
0.2
311
Tumor
0.2
1045
Tumor
0.2
553
Tumor
0.2
137
Tumor
0.2
1042
Normal
0.2
967
Tumor
0.2
728
Normal
0.2
698
Normal
0.2
523
Tumor
0.2
533
Tumor
0.2
1015
Tumor
0.2
883
Tumor
0.2
862
Normal
0.2
964
Normal
0.2
286
Normal
0.2
737
Tumor
0.2
816
Normal
0.2
968
Normal
0.2
943
Tumor
0.1
952
Normal
0.1
745
Tumor
0.1
738
Normal
0.1
224
Normal
0.1
228
Normal
0.1
375
Tumor
0.1
328
Normal
0.1
558
Normal
0.1
231
Tumor
0.1
881
Tumor
0.1
125
Tumor
0.1
984
Normal
0.1
514
Normal
0.1
462
Normal
0.1
473
Tumor
0.1
778
Normal
0.1
411
Tumor
0.1
435
Tumor
0.1
663
Tumor
0.1
824
Normal
0.1
538
Normal
0.1
572
Normal
0.1
666
Normal
0.1
648
Normal
0.1
917
Tumor
0.1
944
Normal
0.1
1044
Normal
0.1
285
Tumor
0.1
211
Tumor
0.1
696
Normal
0.1
817
Tumor
0.1
618
Normal
0.1
192
Normal
0.1
284
Normal
0.1
975
Tumor
0.1
818
Normal
0.1
966
Normal
0.1
365
Tumor
0.1
395
Tumor
0.1
914
Normal
0.0
742
Normal
0.0
223
Tumor
0.0
873
Tumor
0.0
926
Normal
0.0
951
Tumor
0.0
494
Normal
0.0
858
Normal
0.0
982
Normal
0.0
497
Tumor
0.0
313
Tumor
0.0
956
Normal
0.0
187
Tumor
0.0
746
Normal
0.0
671
Tumor
0.0
564
Normal
0.0
327
Tumor
0.0
568
Normal
0.0
924
Normal
0.0
662
Normal
0.0
283
Tumor
0.0
823
Tumor
0.0
112
Tumor
0.0
916
Normal
0.0
386
Normal
0.0
913
Tumor
0.0
527
Tumor
0.0
756
Normal
0.0
343
Tumor
0.0
355
Tumor
0.0
135
Tumor
0.0
341
Tumor
0.0
664
Normal
0.0
352
Normal
0.0
716
Normal
0.0
526
Normal
0.0
356
Normal
0.0
1027
Tumor
0.0
563
Tumor
0.0
958
Normal
0.0
1022
Normal
0.0
661
Tumor
0.0
396
Normal
-0.1
857
Tumor
-0.1
1031
Tumor
-0.1
722
Normal
-0.1
136
Normal
-0.1
113
Tumor
-0.1
813
Tumor
-0.1
695
Tumor
-0.1
1013
Tumor
-0.1
937
Tumor
-0.1
744
Normal
-0.1
444
Normal
-0.1
557
Tumor
-0.1
567
Tumor
-0.1
127
Tumor
-0.1
424
Normal
-0.1
456
Normal
-0.1
954
Normal
-0.1
366
Normal
-0.1
1014
Normal
-0.1
525
Tumor
-0.1
724
Normal
-0.1
142
Normal
-0.1
627
Tumor
-0.1
268
Normal
-0.1
1032
Normal
-0.1
342
Normal
-0.1
384
Normal
-0.1
493
Tumor
-0.1
978
Normal
-0.1
132
Normal
-0.1
145
Tumor
-0.2
474
Normal
-0.2
464
Normal
-0.2
431
Tumor
-0.2
785
Tumor
-0.2
1028
Normal
-0.2
647
Tumor
-0.2
922
Normal
-0.2
574
Normal
-0.2
272
Normal
-0.2
126
Normal
-0.2
642
Normal
-0.2
466
Normal
-0.2
218
Normal
-0.2
188
Normal
-0.2
615
Tumor
-0.2
138
Normal
-0.2
271
Tumor
-0.2
628
Normal
-0.2
413
Tumor
-0.2
463
Tumor
-0.2
344
Normal
-0.2
686
Normal
-0.2
362
Normal
-0.2
1025
Tumor
-0.2
468
Normal
-0.2
422
Normal
-0.2
938
Normal
-0.2
312
Normal
-0.2
191
Tumor
-0.2
428
Normal
-0.2
148
Normal
-0.2
358
Normal
-0.2
354
Normal
-0.2
953
Tumor
-0.3
227
Tumor
-0.3
368
Normal
-0.3
467
Tumor
-0.3
298
Normal
-0.3
421
Tumor
-0.3
232
Normal
-0.3
477
Tumor
-0.3
513
Tumor
-0.3
616
Normal
-0.3
436
Normal
-0.3
277
Tumor
-0.3
278
Normal
-0.3
353
Tumor
-0.3
392
Normal
-0.3
257
Tumor
-0.3
146
Normal
-0.3
488
Normal
-0.3
332
Normal
-0.3
222
Normal
-0.3
385
Tumor
-0.3
262
Normal
-0.3
414
Normal
-0.4
171
Tumor
-0.4
434
Normal
-0.4
697
Tumor
-0.4
221
Tumor
-0.4
491
Tumor
-0.4
425
Tumor
-0.4
367
Tumor
-0.4
128
Normal
-0.4
446
Normal
-0.4
452
Normal
-0.4
111
Normal
-0.4
258
Normal
-0.4
865
Tumor
-0.4
314
Normal
-0.4
376
Normal
-0.4
114
Normal
-0.4
426
Normal
-0.4
713
Tumor
-0.4
394
Normal
-0.4
925
Tumor
-0.4
455
Tumor
-0.4
217
Tumor
-0.4
196
Normal
-0.4
571
Tumor
-0.5
432
Normal
-0.5
383
Tumor
-0.5
185
Tumor
-0.5
162
Normal
-0.5
172
Normal
-0.5
573
Tumor
-0.5
923
Tumor
-0.5
636
Normal
-0.5
186
Normal
-0.5
423
Tumor
-0.5
391
Tumor
-0.5
388
Normal
-0.5
267
Tumor
-0.5
141
Tumor
-0.5
161
Tumor
-0.5
361
Tumor
-0.5
721
Tumor
-0.5
433
Tumor
-0.5
635
Tumor
-0.6
427
Tumor
-0.6
124
Normal
-0.6
195
Tumor
-0.6
357
Tumor
-0.6
214
Normal
-0.6
445
Tumor
-0.6
465
Tumor
-0.6
147
Tumor
-0.7
213
Tumor
-0.7
387
Tumor
-0.7
123
Tumor
-0.7
487
Tumor
-0.9
443
Tumor
-1.0
393
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.