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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KPNA3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KPNA3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
231
Samples
Sample
Description
TPM
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
0.8
911
Tumor
0.7
661
Tumor
0.7
1027
Tumor
0.6
1043
Tumor
0.6
363
Tumor
0.6
411
Tumor
0.5
231
Tumor
0.5
663
Tumor
0.5
257
Tumor
0.5
743
Tumor
0.5
451
Tumor
0.5
727
Tumor
0.4
537
Tumor
0.4
815
Tumor
0.4
1013
Tumor
0.4
1015
Tumor
0.4
261
Tumor
0.4
271
Tumor
0.4
965
Tumor
0.4
331
Tumor
0.3
385
Tumor
0.3
715
Tumor
0.3
313
Tumor
0.3
883
Tumor
0.3
127
Tumor
0.3
351
Tumor
0.3
777
Tumor
0.3
395
Tumor
0.3
817
Tumor
0.3
567
Tumor
0.3
983
Tumor
0.3
297
Tumor
0.3
557
Tumor
0.3
137
Tumor
0.3
617
Tumor
0.3
483
Tumor
0.3
1041
Tumor
0.2
724
Normal
0.2
435
Tumor
0.2
413
Tumor
0.2
327
Tumor
0.2
427
Tumor
0.2
963
Tumor
0.2
461
Tumor
0.2
147
Tumor
0.2
447
Tumor
0.2
863
Tumor
0.2
647
Tumor
0.2
967
Tumor
0.2
171
Tumor
0.2
814
Normal
0.2
813
Tumor
0.2
357
Tumor
0.2
533
Tumor
0.2
467
Tumor
0.2
851
Tumor
0.2
258
Normal
0.2
425
Tumor
0.2
515
Tumor
0.2
1021
Tumor
0.2
436
Normal
0.2
426
Normal
0.2
131
Tumor
0.2
497
Tumor
0.2
873
Tumor
0.2
517
Tumor
0.2
713
Tumor
0.2
232
Normal
0.2
375
Tumor
0.2
392
Normal
0.2
272
Normal
0.2
148
Normal
0.2
943
Tumor
0.1
422
Normal
0.1
262
Normal
0.1
362
Normal
0.1
132
Normal
0.1
341
Tumor
0.1
414
Normal
0.1
742
Normal
0.1
618
Normal
0.1
314
Normal
0.1
648
Normal
0.1
627
Tumor
0.1
1031
Tumor
0.1
222
Normal
0.1
268
Normal
0.1
186
Normal
0.1
162
Normal
0.1
528
Normal
0.1
481
Tumor
0.1
636
Normal
0.1
491
Tumor
0.1
391
Tumor
0.1
376
Normal
0.1
937
Tumor
0.1
421
Tumor
0.1
223
Tumor
0.1
217
Tumor
0.1
498
Normal
0.1
112
Tumor
0.1
982
Normal
0.1
424
Normal
0.1
125
Tumor
0.1
218
Normal
0.1
463
Tumor
0.1
298
Normal
0.1
913
Tumor
0.1
111
Normal
0.1
666
Normal
0.1
482
Normal
0.1
492
Normal
0.1
394
Normal
0.1
616
Normal
0.1
311
Tumor
0.1
187
Tumor
0.1
388
Normal
0.1
353
Tumor
0.1
746
Normal
0.1
488
Normal
0.1
386
Normal
0.1
191
Tumor
0.1
755
Tumor
0.1
396
Normal
0.1
211
Tumor
0.1
944
Normal
0.1
786
Normal
0.1
114
Normal
0.1
641
Tumor
0.1
172
Normal
0.1
126
Normal
0.1
671
Tumor
0.1
415
Tumor
0.1
185
Tumor
0.1
695
Tumor
0.1
267
Tumor
0.1
877
Tumor
0.0
564
Normal
0.0
221
Tumor
0.0
952
Normal
0.0
546
Normal
0.0
384
Normal
0.0
978
Normal
0.0
227
Tumor
0.0
277
Tumor
0.0
484
Normal
0.0
356
Normal
0.0
428
Normal
0.0
136
Normal
0.0
123
Tumor
0.0
432
Normal
0.0
468
Normal
0.0
628
Normal
0.0
113
Tumor
0.0
493
Tumor
0.0
664
Normal
0.0
568
Normal
0.0
951
Tumor
0.0
472
Normal
0.0
553
Tumor
0.0
1016
Normal
0.0
1044
Normal
0.0
955
Tumor
0.0
642
Normal
0.0
953
Tumor
0.0
128
Normal
0.0
916
Normal
0.0
1028
Normal
0.0
778
Normal
0.0
368
Normal
0.0
738
Normal
0.0
328
Normal
0.0
538
Normal
0.0
534
Normal
0.0
1032
Normal
0.0
714
Normal
0.0
487
Tumor
0.0
915
Tumor
0.0
956
Normal
0.0
1026
Normal
0.0
352
Normal
0.0
966
Normal
0.0
446
Normal
0.0
145
Tumor
0.0
416
Normal
0.0
558
Normal
0.0
188
Normal
0.0
744
Normal
0.0
466
Normal
0.0
358
Normal
0.0
456
Normal
0.0
228
Normal
0.0
312
Normal
0.0
146
Normal
0.0
818
Normal
0.0
696
Normal
0.0
342
Normal
0.0
367
Tumor
0.0
412
Normal
0.0
722
Normal
0.0
286
Normal
0.0
285
Tumor
0.0
332
Normal
0.0
494
Normal
0.0
523
Tumor
0.0
545
Tumor
0.0
536
Normal
0.0
464
Normal
0.0
138
Normal
0.0
1014
Normal
0.0
214
Normal
0.0
862
Normal
0.0
278
Normal
0.0
554
Normal
0.0
366
Normal
0.0
161
Tumor
0.0
196
Normal
0.0
938
Normal
0.0
474
Normal
0.0
976
Normal
0.0
912
Normal
0.0
574
Normal
0.0
868
Normal
0.0
924
Normal
0.0
354
Normal
0.0
284
Normal
0.0
365
Tumor
0.0
964
Normal
0.0
563
Tumor
0.0
723
Tumor
0.0
864
Normal
0.0
448
Normal
0.0
1046
Normal
0.0
858
Normal
0.0
141
Tumor
0.0
881
Tumor
0.0
462
Normal
0.0
914
Normal
0.0
918
Normal
0.0
968
Normal
0.0
874
Normal
0.0
1025
Tumor
-0.1
615
Tumor
-0.1
984
Normal
-0.1
283
Tumor
-0.1
884
Normal
-0.1
434
Normal
-0.1
728
Normal
-0.1
387
Tumor
-0.1
954
Normal
-0.1
445
Tumor
-0.1
672
Normal
-0.1
686
Normal
-0.1
525
Tumor
-0.1
926
Normal
-0.1
866
Normal
-0.1
364
Normal
-0.1
716
Normal
-0.1
192
Normal
-0.1
478
Normal
-0.1
975
Tumor
-0.1
124
Normal
-0.1
344
Normal
-0.1
698
Normal
-0.1
572
Normal
-0.1
685
Tumor
-0.1
518
Normal
-0.1
452
Normal
-0.1
142
Normal
-0.1
861
Tumor
-0.1
514
Normal
-0.1
135
Tumor
-0.1
917
Tumor
-0.1
925
Tumor
-0.1
981
Tumor
-0.1
455
Tumor
-0.1
1022
Normal
-0.1
662
Normal
-0.1
852
Normal
-0.1
343
Tumor
-0.1
958
Normal
-0.1
816
Normal
-0.1
195
Tumor
-0.1
513
Tumor
-0.1
977
Tumor
-0.1
824
Normal
-0.1
741
Tumor
-0.1
882
Normal
-0.1
721
Tumor
-0.1
878
Normal
-0.1
1042
Normal
-0.1
213
Tumor
-0.1
526
Normal
-0.2
527
Tumor
-0.2
212
Normal
-0.2
535
Tumor
-0.2
471
Tumor
-0.2
444
Normal
-0.2
745
Tumor
-0.2
922
Normal
-0.2
857
Tumor
-0.2
473
Tumor
-0.2
224
Normal
-0.2
921
Tumor
-0.2
361
Tumor
-0.2
756
Normal
-0.2
737
Tumor
-0.2
524
Normal
-0.2
867
Tumor
-0.2
393
Tumor
-0.2
433
Tumor
-0.2
355
Tumor
-0.2
697
Tumor
-0.3
785
Tumor
-0.3
1045
Tumor
-0.3
516
Normal
-0.3
383
Tumor
-0.3
443
Tumor
-0.3
431
Tumor
-0.3
923
Tumor
-0.3
465
Tumor
-0.3
571
Tumor
-0.3
477
Tumor
-0.3
865
Tumor
-0.3
957
Tumor
-0.4
573
Tumor
-0.4
823
Tumor
-0.4
635
Tumor
-0.5
423
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
