MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA Brain:20.7 nTPM
GTEx:8.0 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:2.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
1870 Female, age 42, unknown 21.6
1830 Male, age 51, unknown 20.4
2019 Male, age 18, unknown 19.7
1833 Male, age 53, unknown 19.1
2411 Female, age 72, unknown 18.0
2828 Female, age 72, unknown 16.4
2666 Male, age 74, left hemisphere 14.7
1827 Male, age 72, unknown 13.5
2219 Male, age 76, both hemispheres 11.1
2586 Male, age 75, left hemisphere 10.5
Dorsal raphe nucleus
nTPM: 17.2
2750 Male, age 76, both hemispheres 20.2
2016 Female, age 72, unknown 19.3
1828 Male, age 53, unknown 16.4
2298 Female, age 72, unknown 15.2
2047 Male, age 72, unknown 14.8
Inferior colliculus
nTPM: 14.4
1890 Male, age 53, unknown 15.5
1848 Female, age 42, unknown 15.0
2849 Male, age 72, unknown 13.8
2097 Female, age 72, unknown 13.5
Median raphe nucleus
nTPM: 15.5
2220 Male, age 76, midline 15.5
Periaquaductal grey, anterior
nTPM: 13.1
2502 Female, age 75, unknown 13.7
1947 Male, age 18, unknown 13.4
1795 Male, age 51, unknown 12.2
Periaquaductal grey, dorsal
nTPM: 15.7
2850 Male, age 76, both hemispheres 18.9
2464 Female, age 72, unknown 15.5
1831 Male, age 72, unknown 15.3
1840 Male, age 53, unknown 13.0
Periaquaductal grey, lateral
nTPM: 17.5
2140 Male, age 76, both hemispheres 18.6
2272 Male, age 74, both hemispheres 17.2
2053 Male, age 18, unknown 16.6
Pretectal area
nTPM: 14.0
2316 Male, age 76, right hemisphere 17.8
2273 Male, age 74, both hemispheres 17.3
1815 Male, age 53, unknown 16.3
1817 Female, age 42, unknown 14.6
2224 Female, age 72, unknown 14.5
2667 Female, age 75, unknown 14.1
2825 Male, age 18, unknown 13.6
2407 Male, age 75, both hemispheres 12.8
2007 Male, age 72, unknown 12.1
1944 Female, age 72, unknown 11.7
1816 Male, age 51, unknown 9.6
Red nucleus
nTPM: 20.7
1865 Male, age 51, unknown 25.9
1904 Male, age 53, unknown 24.4
2227 Male, age 72, unknown 22.8
2823 Male, age 76, right hemisphere 22.6
1954 Female, age 42, unknown 22.4
1821 Female, age 72, unknown 22.3
2769 Male, age 72, unknown 21.9
2503 Female, age 72, unknown 21.0
2785 Male, age 18, unknown 19.6
2725 Female, age 75, unknown 16.5
2588 Male, age 74, left hemisphere 16.3
2584 Male, age 75, left hemisphere 12.7
Substantia nigra
nTPM: 16.8
2699 Male, age 18, unknown 20.2
2409 Female, age 72, unknown 19.7
2590 Female, age 75, unknown 19.3
2665 Male, age 74, both hemispheres 17.7
1851 Male, age 51, unknown 16.9
2241 Male, age 72, unknown 15.9
1889 Female, age 72, unknown 15.2
2583 Male, age 75, right hemisphere 15.2
1916 Female, age 42, unknown 14.5
1941 Male, age 53, unknown 13.7
Superior colliculus
nTPM: 15.7
1913 Female, age 42, unknown 23.3
1995 Male, age 72, unknown 21.8
2587 Male, age 74, left hemisphere 18.4
1839 Male, age 51, unknown 16.1
2668 Female, age 75, unknown 15.2
1895 Male, age 76, right hemisphere 14.2
2087 Female, age 72, unknown 13.1
1796 Male, age 53, unknown 12.5
2664 Male, age 75, both hemispheres 11.3
2261 Male, age 18, unknown 11.0
Ventral tegmental area
nTPM: 17.0
2223 Female, age 72, unknown 20.6
2410 Female, age 72, unknown 17.5
2021 Male, age 53, unknown 17.2
2218 Male, age 76, both hemispheres 16.4
1915 Female, age 42, unknown 15.4
1942 Male, age 51, unknown 15.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.0
Samples: 139

Max nTPM: 14.7
Min nTPM: 2.9
Std nTPM: 2.4
Median nTPM: 7.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 14.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 14.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 14.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 13.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 13.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 13.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 12.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 12.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 12.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 12.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 12.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.4
FF:10158-103A5 76 years, female 46.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 22.3
Min nTPM: 17.2
Sample A Female 18.0
Sample B Female 17.2
Sample C Male 18.2
Sample D Male 22.3
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 24.6
Min nTPM: 14.8
Sample A Female 24.3
Sample B Female 14.8
Sample C Male 24.6
Sample D Male 15.9
Periaqueductal gray
nTPM: 14.2
Samples: 3

Max nTPM: 15.3
Min nTPM: 13.6
Sample B Female 13.6
Sample C Male 15.3
Sample D Male 13.7
Superior colliculi
nTPM: 20.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 17.9
Sample A Female 17.9
Sample B Female 21.3
Sample C Male 23.6
Sample D Male 19.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.2
Samples: 4

Max nTPM: 2.3
Min nTPM: 2.2
Sample A Male 2.2
Sample B Male 2.3
Sample C Female 2.2
Sample D Female 2.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69524386 Antisense, RP_050419_04_C03, Mouse strain C57BL/6J (56 days, male) 0.1
72076587 Antisense, RP_051012_04_D12, Mouse strain C57BL/6J (56 days, male) 0.0

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