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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STK24 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
199.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
132.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
131.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
131.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
125.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
108.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
102.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
97.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
81.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
78.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
77.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
77.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
76.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
73.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
70.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
69.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
66.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
65.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
64.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
63.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
60.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
60.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
59.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
58.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
57.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
55.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
55.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
53.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
52.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
52.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
51.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
49.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
48.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
47.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
46.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
46.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
45.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
44.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
42.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
40.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
39.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
39.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
37.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
37.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
37.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
32.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
26.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STK24 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.0
Number of samples
231
Samples
Sample
Description
TPM
DO45263
0 years, male, NA, stage:3, dead, 270 days
163.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
76.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
59.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
54.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
53.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
47.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
42.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
1.0
743
Tumor
0.8
951
Tumor
0.8
921
Tumor
0.7
311
Tumor
0.7
411
Tumor
0.6
737
Tumor
0.6
983
Tumor
0.6
917
Tumor
0.6
815
Tumor
0.6
777
Tumor
0.6
471
Tumor
0.5
131
Tumor
0.5
271
Tumor
0.5
877
Tumor
0.5
641
Tumor
0.5
817
Tumor
0.5
863
Tumor
0.4
211
Tumor
0.4
385
Tumor
0.4
713
Tumor
0.4
125
Tumor
0.4
497
Tumor
0.4
567
Tumor
0.4
785
Tumor
0.4
881
Tumor
0.4
297
Tumor
0.4
473
Tumor
0.4
813
Tumor
0.4
313
Tumor
0.3
545
Tumor
0.3
553
Tumor
0.3
695
Tumor
0.3
661
Tumor
0.3
227
Tumor
0.3
455
Tumor
0.3
1031
Tumor
0.3
975
Tumor
0.3
375
Tumor
0.3
537
Tumor
0.3
447
Tumor
0.3
1025
Tumor
0.3
1013
Tumor
0.3
535
Tumor
0.3
663
Tumor
0.3
1043
Tumor
0.3
865
Tumor
0.3
715
Tumor
0.3
221
Tumor
0.3
851
Tumor
0.3
957
Tumor
0.3
277
Tumor
0.3
943
Tumor
0.2
671
Tumor
0.2
697
Tumor
0.2
192
Normal
0.2
491
Tumor
0.2
351
Tumor
0.2
467
Tumor
0.2
515
Tumor
0.2
395
Tumor
0.2
967
Tumor
0.2
161
Tumor
0.2
461
Tumor
0.2
147
Tumor
0.2
814
Normal
0.2
367
Tumor
0.2
883
Tumor
0.2
445
Tumor
0.2
425
Tumor
0.2
721
Tumor
0.2
635
Tumor
0.2
937
Tumor
0.2
517
Tumor
0.2
363
Tumor
0.2
963
Tumor
0.2
413
Tumor
0.2
434
Normal
0.2
686
Normal
0.2
538
Normal
0.1
617
Tumor
0.1
523
Tumor
0.1
536
Normal
0.1
224
Normal
0.1
185
Tumor
0.1
953
Tumor
0.1
984
Normal
0.1
284
Normal
0.1
627
Tumor
0.1
647
Tumor
0.1
285
Tumor
0.1
217
Tumor
0.1
978
Normal
0.1
1015
Tumor
0.1
141
Tumor
0.1
487
Tumor
0.1
343
Tumor
0.1
742
Normal
0.1
137
Tumor
0.1
1021
Tumor
0.1
498
Normal
0.1
954
Normal
0.1
493
Tumor
0.1
261
Tumor
0.1
213
Tumor
0.1
331
Tumor
0.1
283
Tumor
0.1
478
Normal
0.0
444
Normal
0.0
127
Tumor
0.0
126
Normal
0.0
113
Tumor
0.0
852
Normal
0.0
716
Normal
0.0
223
Tumor
0.0
257
Tumor
0.0
483
Tumor
0.0
433
Tumor
0.0
383
Tumor
0.0
355
Tumor
0.0
884
Normal
0.0
745
Tumor
0.0
384
Normal
0.0
474
Normal
0.0
966
Normal
0.0
427
Tumor
0.0
857
Tumor
0.0
878
Normal
0.0
546
Normal
0.0
492
Normal
0.0
524
Normal
0.0
778
Normal
0.0
714
Normal
0.0
494
Normal
0.0
415
Tumor
0.0
513
Tumor
0.0
124
Normal
0.0
435
Tumor
0.0
874
Normal
0.0
112
Tumor
0.0
146
Normal
0.0
572
Normal
0.0
723
Tumor
0.0
956
Normal
0.0
724
Normal
0.0
738
Normal
0.0
696
Normal
0.0
816
Normal
0.0
866
Normal
0.0
341
Tumor
0.0
746
Normal
0.0
728
Normal
0.0
472
Normal
0.0
558
Normal
0.0
786
Normal
0.0
744
Normal
0.0
882
Normal
0.0
188
Normal
0.0
1027
Tumor
0.0
214
Normal
0.0
977
Tumor
0.0
534
Normal
0.0
1044
Normal
0.0
976
Normal
0.0
212
Normal
0.0
191
Tumor
0.0
873
Tumor
0.0
982
Normal
-0.1
722
Normal
-0.1
554
Normal
-0.1
262
Normal
-0.1
824
Normal
-0.1
955
Tumor
-0.1
142
Normal
-0.1
628
Normal
-0.1
968
Normal
-0.1
448
Normal
-0.1
563
Tumor
-0.1
443
Tumor
-0.1
528
Normal
-0.1
218
Normal
-0.1
526
Normal
-0.1
488
Normal
-0.1
571
Tumor
-0.1
952
Normal
-0.1
615
Tumor
-0.1
916
Normal
-0.1
944
Normal
-0.1
818
Normal
-0.1
514
Normal
-0.1
365
Tumor
-0.1
958
Normal
-0.1
462
Normal
-0.1
756
Normal
-0.1
616
Normal
-0.1
913
Tumor
-0.1
195
Tumor
-0.1
196
Normal
-0.1
862
Normal
-0.1
1014
Normal
-0.1
416
Normal
-0.1
484
Normal
-0.1
868
Normal
-0.1
1046
Normal
-0.1
1028
Normal
-0.1
914
Normal
-0.1
568
Normal
-0.1
362
Normal
-0.1
312
Normal
-0.1
938
Normal
-0.1
187
Tumor
-0.1
421
Tumor
-0.1
1016
Normal
-0.1
228
Normal
-0.1
664
Normal
-0.1
463
Tumor
-0.1
481
Tumor
-0.1
912
Normal
-0.1
965
Tumor
-0.1
864
Normal
-0.1
286
Normal
-0.1
642
Normal
-0.1
662
Normal
-0.1
741
Tumor
-0.1
412
Normal
-0.1
386
Normal
-0.1
672
Normal
-0.1
648
Normal
-0.1
344
Normal
-0.1
518
Normal
-0.1
1045
Tumor
-0.1
468
Normal
-0.1
432
Normal
-0.2
268
Normal
-0.2
451
Tumor
-0.2
858
Normal
-0.2
387
Tumor
-0.2
755
Tumor
-0.2
698
Normal
-0.2
272
Normal
-0.2
516
Normal
-0.2
573
Tumor
-0.2
327
Tumor
-0.2
636
Normal
-0.2
918
Normal
-0.2
128
Normal
-0.2
823
Tumor
-0.2
393
Tumor
-0.2
482
Normal
-0.2
352
Normal
-0.2
111
Normal
-0.2
557
Tumor
-0.2
364
Normal
-0.2
964
Normal
-0.2
145
Tumor
-0.2
114
Normal
-0.2
431
Tumor
-0.2
267
Tumor
-0.2
924
Normal
-0.2
665
Tumor
-0.2
666
Normal
-0.2
727
Tumor
-0.2
436
Normal
-0.2
477
Tumor
-0.2
328
Normal
-0.2
356
Normal
-0.2
357
Tumor
-0.2
232
Normal
-0.2
123
Tumor
-0.2
922
Normal
-0.2
574
Normal
-0.2
342
Normal
-0.2
1026
Normal
-0.2
222
Normal
-0.2
456
Normal
-0.2
1032
Normal
-0.2
332
Normal
-0.2
138
Normal
-0.2
911
Tumor
-0.2
1022
Normal
-0.2
148
Normal
-0.2
618
Normal
-0.2
446
Normal
-0.2
376
Normal
-0.2
923
Tumor
-0.3
388
Normal
-0.3
466
Normal
-0.3
1041
Tumor
-0.3
564
Normal
-0.3
368
Normal
-0.3
392
Normal
-0.3
136
Normal
-0.3
278
Normal
-0.3
861
Tumor
-0.3
396
Normal
-0.3
423
Tumor
-0.3
527
Tumor
-0.3
132
Normal
-0.3
422
Normal
-0.3
366
Normal
-0.3
926
Normal
-0.3
424
Normal
-0.3
258
Normal
-0.3
354
Normal
-0.3
452
Normal
-0.3
162
Normal
-0.3
685
Tumor
-0.3
925
Tumor
-0.3
414
Normal
-0.3
1042
Normal
-0.3
981
Tumor
-0.4
394
Normal
-0.4
867
Tumor
-0.4
358
Normal
-0.4
314
Normal
-0.4
172
Normal
-0.4
186
Normal
-0.4
525
Tumor
-0.4
428
Normal
-0.4
915
Tumor
-0.4
426
Normal
-0.4
361
Tumor
-0.4
391
Tumor
-0.4
464
Normal
-0.4
465
Tumor
-0.4
171
Tumor
-0.5
533
Tumor
-0.5
353
Tumor
-0.6
231
Tumor
-0.6
298
Normal
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
