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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PBDC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
93.0
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
67.9
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
62.0
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
45.3
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
38.5
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
35.0
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
34.9
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
33.9
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
32.6
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
31.5
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
31.0
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
30.0
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
29.3
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
29.0
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
28.6
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
28.6
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
28.3
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
27.7
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
27.6
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
26.9
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
26.9
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
26.9
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
26.3
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
25.9
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
25.9
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
25.7
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
25.6
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
25.3
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
25.1
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
25.1
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
24.7
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
24.7
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
24.5
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
24.3
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
24.0
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
24.0
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
23.9
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
23.6
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
23.4
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
23.3
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
23.1
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
22.9
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
22.7
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
22.6
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
22.5
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
22.5
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
22.3
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
22.2
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
22.0
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
21.9
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
21.8
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
21.7
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
21.7
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
21.6
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
21.5
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
21.5
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.3
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
21.1
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
21.1
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
21.0
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
20.9
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
20.8
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
20.8
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
20.8
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
20.7
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
20.5
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
20.4
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
20.4
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
20.4
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
20.2
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
20.2
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
20.1
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
20.0
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
20.0
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.9
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
19.8
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
19.7
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
19.7
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
19.6
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
19.5
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
19.5
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
19.5
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
19.5
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
19.2
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
19.1
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
19.1
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
19.0
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
18.9
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
18.8
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
18.7
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
18.7
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
18.7
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
18.6
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.6
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
18.3
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
18.3
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
18.3
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
18.2
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
18.0
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
18.0
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
18.0
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
17.8
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
17.6
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
17.6
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
17.6
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
17.5
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
17.5
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
17.5
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
17.5
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
17.5
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.4
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
17.3
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
17.2
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
17.2
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
17.2
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
17.1
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
17.0
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
17.0
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
17.0
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
17.0
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
17.0
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
17.0
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
17.0
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
16.8
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
16.8
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
16.8
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
16.7
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
16.7
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
16.7
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
16.7
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
16.6
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
16.6
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
16.6
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
16.4
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
16.4
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
16.3
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
16.3
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
16.3
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
16.3
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
16.2
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
16.2
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
16.2
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
16.1
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
16.0
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
16.0
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
16.0
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
15.9
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
15.9
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
15.9
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
15.8
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
15.8
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
15.7
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
15.6
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
15.6
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
15.6
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
15.5
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
15.4
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
15.4
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
15.4
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
15.3
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
15.3
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
15.3
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
15.1
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
15.0
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
14.8
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
14.8
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
14.8
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
14.7
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
14.5
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
14.5
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
14.3
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
14.2
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
14.2
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
14.2
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
14.2
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
14.2
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
14.1
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
14.1
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
14.0
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
13.8
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
13.7
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
13.7
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
13.7
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
13.6
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
13.6
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
13.6
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
13.5
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
13.5
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
13.5
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
13.3
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
13.3
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
13.3
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
13.3
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
13.3
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
13.2
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
13.1
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
13.0
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
12.9
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
12.9
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
12.8
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
12.8
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
12.8
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
12.8
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
12.8
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
12.8
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
12.8
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
12.7
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
12.7
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
12.7
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
12.7
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
12.6
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
12.6
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
12.6
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
12.6
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
12.6
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
12.5
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
12.4
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
12.4
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
12.3
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
12.3
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
12.3
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
12.3
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
12.3
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
12.2
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
12.2
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
12.2
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
12.1
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
12.1
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
12.1
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
12.0
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
12.0
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
12.0
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
12.0
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
12.0
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
11.9
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
11.9
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
11.9
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
11.9
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
11.9
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
11.8
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
11.8
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
11.8
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
11.8
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
11.7
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
11.7
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
11.6
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
11.6
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
11.6
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
11.6
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
11.5
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
11.3
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
11.2
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
11.2
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
11.2
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
11.1
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
11.1
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
11.1
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
11.0
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
10.9
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
10.9
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
10.8
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
10.8
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
10.7
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
10.7
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
10.7
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
10.7
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
10.7
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
10.7
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
10.6
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
10.6
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
10.6
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
10.5
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
10.5
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
10.5
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
10.4
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
10.3
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
10.3
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
10.3
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
10.2
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
10.2
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
10.2
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
10.1
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
10.1
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
10.0
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
10.0
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
9.9
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
9.8
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
9.8
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
9.7
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
9.6
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
9.6
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.6
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
9.6
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
9.5
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
9.5
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
9.5
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
9.5
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
9.4
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
9.4
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
9.3
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
9.3
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
9.3
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
9.3
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
9.3
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
9.2
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
9.2
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
9.1
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
9.0
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
8.9
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
8.9
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
8.8
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.8
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
8.8
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
8.7
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
8.7
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
8.7
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
8.7
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
8.7
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
8.6
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
8.5
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
8.5
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
8.3
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
8.2
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
8.0
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
7.9
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
7.9
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
7.8
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
7.8
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
7.7
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
7.7
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
7.7
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
7.7
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
7.5
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
7.4
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
7.1
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
6.7
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
6.7
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
6.6
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
6.4
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
5.8
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
5.1
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
4.7
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
1.2
983
Tumor
1.0
285
Tumor
0.9
685
Tumor
0.9
481
Tumor
0.9
965
Tumor
0.8
857
Tumor
0.8
727
Tumor
0.6
737
Tumor
0.6
523
Tumor
0.6
861
Tumor
0.6
785
Tumor
0.6
1013
Tumor
0.6
471
Tumor
0.6
211
Tumor
0.5
546
Normal
0.5
393
Tumor
0.5
527
Tumor
0.5
484
Normal
0.5
695
Tumor
0.5
815
Tumor
0.4
351
Tumor
0.4
665
Tumor
0.4
554
Normal
0.4
494
Normal
0.4
537
Tumor
0.4
448
Normal
0.4
723
Tumor
0.4
477
Tumor
0.4
724
Normal
0.4
411
Tumor
0.4
534
Normal
0.4
1022
Normal
0.4
492
Normal
0.4
716
Normal
0.4
557
Tumor
0.4
363
Tumor
0.3
958
Normal
0.3
916
Normal
0.3
817
Tumor
0.3
742
Normal
0.3
746
Normal
0.3
661
Tumor
0.3
912
Normal
0.3
488
Normal
0.3
528
Normal
0.3
738
Normal
0.3
938
Normal
0.3
1026
Normal
0.3
1044
Normal
0.3
851
Tumor
0.3
943
Tumor
0.3
416
Normal
0.3
954
Normal
0.3
698
Normal
0.3
913
Tumor
0.3
756
Normal
0.3
862
Normal
0.3
864
Normal
0.3
1021
Tumor
0.3
533
Tumor
0.3
284
Normal
0.3
524
Normal
0.3
1032
Normal
0.3
538
Normal
0.3
963
Tumor
0.3
696
Normal
0.3
482
Normal
0.3
944
Normal
0.3
881
Tumor
0.3
516
Normal
0.3
952
Normal
0.3
966
Normal
0.2
228
Normal
0.2
728
Normal
0.2
525
Tumor
0.2
364
Normal
0.2
978
Normal
0.2
956
Normal
0.2
1046
Normal
0.2
1042
Normal
0.2
722
Normal
0.2
298
Normal
0.2
697
Tumor
0.2
686
Normal
0.2
868
Normal
0.2
813
Tumor
0.2
425
Tumor
0.2
852
Normal
0.2
922
Normal
0.2
536
Normal
0.2
518
Normal
0.2
964
Normal
0.2
412
Normal
0.2
478
Normal
0.2
814
Normal
0.2
227
Tumor
0.2
472
Normal
0.2
924
Normal
0.2
976
Normal
0.2
786
Normal
0.2
714
Normal
0.2
545
Tumor
0.2
356
Normal
0.2
1014
Normal
0.2
1028
Normal
0.2
617
Tumor
0.2
955
Tumor
0.2
715
Tumor
0.2
224
Normal
0.2
514
Normal
0.2
212
Normal
0.2
131
Tumor
0.2
883
Tumor
0.2
413
Tumor
0.1
878
Normal
0.1
778
Normal
0.1
385
Tumor
0.1
462
Normal
0.1
171
Tumor
0.1
984
Normal
0.1
572
Normal
0.1
882
Normal
0.1
858
Normal
0.1
558
Normal
0.1
513
Tumor
0.1
447
Tumor
0.1
818
Normal
0.1
1045
Tumor
0.1
474
Normal
0.1
355
Tumor
0.1
1041
Tumor
0.1
498
Normal
0.1
1043
Tumor
0.1
918
Normal
0.1
415
Tumor
0.1
824
Normal
0.1
445
Tumor
0.1
553
Tumor
0.1
314
Normal
0.1
647
Tumor
0.1
866
Normal
0.1
926
Normal
0.1
261
Tumor
0.1
283
Tumor
0.1
975
Tumor
0.1
884
Normal
0.1
125
Tumor
0.1
874
Normal
0.1
456
Normal
0.1
671
Tumor
0.1
1025
Tumor
0.1
1016
Normal
0.1
917
Tumor
0.1
1031
Tumor
0.1
968
Normal
0.1
957
Tumor
0.1
526
Normal
0.1
142
Normal
0.1
278
Normal
0.1
461
Tumor
0.1
982
Normal
0.1
343
Tumor
0.1
387
Tumor
0.1
953
Tumor
0.1
777
Tumor
0.1
535
Tumor
0.1
286
Normal
0.1
816
Normal
0.1
328
Normal
0.1
313
Tumor
0.1
422
Normal
0.1
616
Normal
0.1
755
Tumor
0.1
744
Normal
0.0
745
Tumor
0.0
741
Tumor
0.0
138
Normal
0.0
568
Normal
0.0
466
Normal
0.0
232
Normal
0.0
132
Normal
0.0
362
Normal
0.0
231
Tumor
0.0
435
Tumor
0.0
914
Normal
0.0
921
Tumor
0.0
925
Tumor
0.0
1027
Tumor
0.0
452
Normal
0.0
473
Tumor
0.0
137
Tumor
0.0
444
Normal
0.0
135
Tumor
0.0
873
Tumor
0.0
664
Normal
0.0
331
Tumor
0.0
146
Normal
0.0
311
Tumor
0.0
186
Normal
0.0
463
Tumor
0.0
468
Normal
0.0
515
Tumor
0.0
436
Normal
0.0
432
Normal
0.0
388
Normal
0.0
721
Tumor
0.0
392
Normal
0.0
915
Tumor
0.0
366
Normal
0.0
136
Normal
0.0
497
Tumor
0.0
493
Tumor
0.0
662
Normal
0.0
332
Normal
0.0
666
Normal
0.0
491
Tumor
0.0
376
Normal
0.0
148
Normal
0.0
342
Normal
0.0
713
Tumor
-0.1
421
Tumor
-0.1
863
Tumor
-0.1
434
Normal
-0.1
384
Normal
-0.1
386
Normal
-0.1
396
Normal
-0.1
188
Normal
-0.1
312
Normal
-0.1
628
Normal
-0.1
128
Normal
-0.1
424
Normal
-0.1
394
Normal
-0.1
642
Normal
-0.1
426
Normal
-0.1
564
Normal
-0.1
618
Normal
-0.1
222
Normal
-0.1
428
Normal
-0.1
636
Normal
-0.1
365
Tumor
-0.1
258
Normal
-0.1
271
Tumor
-0.1
268
Normal
-0.1
648
Normal
-0.1
391
Tumor
-0.1
923
Tumor
-0.1
414
Normal
-0.1
641
Tumor
-0.1
162
Normal
-0.1
172
Normal
-0.1
571
Tumor
-0.1
214
Normal
-0.1
185
Tumor
-0.1
196
Normal
-0.1
114
Normal
-0.1
124
Normal
-0.1
277
Tumor
-0.1
126
Normal
-0.1
567
Tumor
-0.1
431
Tumor
-0.1
262
Normal
-0.1
574
Normal
-0.1
1015
Tumor
-0.1
367
Tumor
-0.1
123
Tumor
-0.1
446
Normal
-0.1
272
Normal
-0.1
483
Tumor
-0.1
563
Tumor
-0.2
465
Tumor
-0.2
464
Normal
-0.2
487
Tumor
-0.2
455
Tumor
-0.2
467
Tumor
-0.2
223
Tumor
-0.2
375
Tumor
-0.2
267
Tumor
-0.2
354
Normal
-0.2
911
Tumor
-0.2
823
Tumor
-0.2
161
Tumor
-0.2
358
Normal
-0.2
627
Tumor
-0.2
615
Tumor
-0.2
672
Normal
-0.2
443
Tumor
-0.2
977
Tumor
-0.2
663
Tumor
-0.2
297
Tumor
-0.2
423
Tumor
-0.2
368
Normal
-0.2
433
Tumor
-0.2
141
Tumor
-0.3
192
Normal
-0.3
257
Tumor
-0.3
327
Tumor
-0.3
865
Tumor
-0.3
867
Tumor
-0.3
195
Tumor
-0.3
111
Normal
-0.3
217
Tumor
-0.3
218
Normal
-0.3
743
Tumor
-0.3
427
Tumor
-0.3
187
Tumor
-0.3
981
Tumor
-0.3
573
Tumor
-0.3
383
Tumor
-0.4
967
Tumor
-0.4
127
Tumor
-0.4
213
Tumor
-0.4
145
Tumor
-0.4
877
Tumor
-0.4
344
Normal
-0.4
112
Tumor
-0.4
352
Normal
-0.4
113
Tumor
-0.4
353
Tumor
-0.4
395
Tumor
-0.4
937
Tumor
-0.4
357
Tumor
-0.5
221
Tumor
-0.5
341
Tumor
-0.5
451
Tumor
-0.5
635
Tumor
-0.5
517
Tumor
-0.5
147
Tumor
-0.5
361
Tumor
-0.5
191
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
