MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.2 nTPM
HPA Brain:129.7 nTPM
GTEx:97.2 nTPM
FANTOM5:68.7 Scaled Tags Per Million
Mouse:84.8 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 129.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.7
2019 Male, age 18, unknown 97.3
2411 Female, age 72, unknown 96.1
2219 Male, age 76, both hemispheres 89.2
1827 Male, age 72, unknown 78.1
1870 Female, age 42, unknown 77.9
1833 Male, age 53, unknown 72.7
2828 Female, age 72, unknown 68.3
1830 Male, age 51, unknown 68.1
2666 Male, age 74, left hemisphere 61.1
2586 Male, age 75, left hemisphere 48.0
Dorsal raphe nucleus
nTPM: 101.2
2298 Female, age 72, unknown 138.8
2047 Male, age 72, unknown 104.1
2750 Male, age 76, both hemispheres 99.5
1828 Male, age 53, unknown 86.2
2016 Female, age 72, unknown 77.5
Inferior colliculus
nTPM: 80.6
2097 Female, age 72, unknown 97.0
1848 Female, age 42, unknown 77.8
1890 Male, age 53, unknown 75.8
2849 Male, age 72, unknown 71.9
Median raphe nucleus
nTPM: 129.7
2220 Male, age 76, midline 129.7
Periaquaductal grey, anterior
nTPM: 83.7
2502 Female, age 75, unknown 87.5
1795 Male, age 51, unknown 83.8
1947 Male, age 18, unknown 79.7
Periaquaductal grey, dorsal
nTPM: 79.4
2850 Male, age 76, both hemispheres 88.3
1840 Male, age 53, unknown 85.6
2464 Female, age 72, unknown 76.0
1831 Male, age 72, unknown 67.6
Periaquaductal grey, lateral
nTPM: 87.8
2272 Male, age 74, both hemispheres 102.2
2140 Male, age 76, both hemispheres 93.4
2053 Male, age 18, unknown 67.7
Pretectal area
nTPM: 95.3
2007 Male, age 72, unknown 120.3
2273 Male, age 74, both hemispheres 116.6
2224 Female, age 72, unknown 116.2
1944 Female, age 72, unknown 102.3
1817 Female, age 42, unknown 101.9
1816 Male, age 51, unknown 95.1
1815 Male, age 53, unknown 89.3
2316 Male, age 76, right hemisphere 84.2
2667 Female, age 75, unknown 83.9
2825 Male, age 18, unknown 75.3
2407 Male, age 75, both hemispheres 62.8
Red nucleus
nTPM: 72.6
2785 Male, age 18, unknown 97.2
1821 Female, age 72, unknown 87.2
2725 Female, age 75, unknown 74.7
2503 Female, age 72, unknown 73.6
2227 Male, age 72, unknown 72.9
2769 Male, age 72, unknown 72.7
1954 Female, age 42, unknown 72.0
1865 Male, age 51, unknown 70.0
1904 Male, age 53, unknown 69.8
2823 Male, age 76, right hemisphere 67.2
2588 Male, age 74, left hemisphere 66.6
2584 Male, age 75, left hemisphere 47.8
Substantia nigra
nTPM: 95.8
1916 Female, age 42, unknown 124.6
1941 Male, age 53, unknown 122.1
2241 Male, age 72, unknown 110.6
1851 Male, age 51, unknown 105.3
1889 Female, age 72, unknown 98.3
2409 Female, age 72, unknown 93.2
2590 Female, age 75, unknown 85.3
2665 Male, age 74, both hemispheres 82.1
2699 Male, age 18, unknown 79.7
2583 Male, age 75, right hemisphere 56.7
Superior colliculus
nTPM: 75.2
2087 Female, age 72, unknown 91.0
2587 Male, age 74, left hemisphere 83.4
2668 Female, age 75, unknown 83.3
2261 Male, age 18, unknown 81.6
1796 Male, age 53, unknown 80.9
1839 Male, age 51, unknown 78.7
1895 Male, age 76, right hemisphere 77.1
1913 Female, age 42, unknown 63.7
2664 Male, age 75, both hemispheres 56.2
1995 Male, age 72, unknown 55.8
Ventral tegmental area
nTPM: 93.7
1915 Female, age 42, unknown 107.2
2218 Male, age 76, both hemispheres 106.5
2410 Female, age 72, unknown 106.0
1942 Male, age 51, unknown 85.3
2021 Male, age 53, unknown 80.3
2223 Female, age 72, unknown 77.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 97.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.2
Samples: 139

Max nTPM: 285.2
Min nTPM: 55.1
Std nTPM: 34.1
Median nTPM: 91.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 285.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 273.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 217.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 192.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 176.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 160.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 159.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 147.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 138.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 138.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 135.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.7
FF:10158-103A5 76 years, female 68.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 84.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 84.9
Samples: 4

Max nTPM: 94.0
Min nTPM: 78.9
Sample A Male 94.0
Sample B Male 83.6
Sample C Female 78.9
Sample D Female 82.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
71836892 Antisense, RP_051017_02_F10, Mouse strain C57BL/6J (56 days, male) 9.7
68744964 Antisense, RP_050210_01_A05, Mouse strain C57BL/6J (56 days, male) 5.7

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