BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.1 nTPM
HPA Brain:0.8 nTPM
GTEx:1.1 nTPM
FANTOM5:1.6 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:1.5 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 0.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1857 Female, age 85, left hemisphere 0.2
1781 Male, age 74, unknown 0.1
1854 Male, age 80, left hemisphere 0.1
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
2567 Female, age 72, unknown 0.1
2646 Male, age 61, right hemisphere 0.1
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
2287 Male, age 75, right hemisphere 0.1
2483 Female, age 94, right hemisphere 0.1
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.8
1856 Female, age 91, right hemisphere 1.9
2698 Female, age 72, unknown 1.7
2824 Male, age 61, right hemisphere 1.0
1783 Male, age 74, unknown 0.7
1806 Female, age 85, left hemisphere 0.6
2732 Male, age 80, right hemisphere 0.4
2391 Female, age 94, left hemisphere 0.1
2286 Male, age 75, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.1
2393 Male, age 80, right hemisphere 0.1
2484 Female, age 94, left hemisphere 0.1
2821 Male, age 75, both hemispheres 0.1
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.2
1979 Male, age 74, unknown 0.3
2195 Female, age 85, both hemispheres 0.3
1812 Female, age 91, both hemispheres 0.2
2029 Male, age 61, right hemisphere 0.1
2775 Male, age 80, right hemisphere 0.1
Putamen
nTPM: 0.1
1838 Male, age 80, right hemisphere 0.5
1937 Female, age 91, right hemisphere 0.1
2482 Female, age 94, left hemisphere 0.1
1829 Male, age 74, unknown 0.0
2466 Female, age 79, unknown 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 0.1
2059 Female, age 85, both hemispheres 0.4
1960 Male, age 74, unknown 0.1
2009 Female, age 91, both hemispheres 0.1
2199 Male, age 80, right hemisphere 0.1
2394 Male, age 61, left hemisphere 0.1
2629 Female, age 94, right hemisphere 0.1
2031 Female, age 72, unknown 0.0
Stria terminalis, bed nucleus
nTPM: 0.7
2201 Male, age 74, unknown 1.9
2486 Female, age 94, both hemispheres 0.3
1974 Female, age 91, both hemispheres 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 1.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.0
Samples: 246

Max nTPM: 10.7
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 10.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 0.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 0.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 0.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 0.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 0.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 0.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 0.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 0.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 0.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.1
Samples: 246

Max nTPM: 13.9
Min nTPM: 0.0
Std nTPM: 1.3
Median nTPM: 0.6
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 13.9
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 5.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 5.6
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 4.1
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 3.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 3.8
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 3.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 3.7
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 3.6
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 3.5
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 3.4
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Brain - Putamen (basal ganglia)
Average nTPM: 0.1
Samples: 205

Max nTPM: 10.5
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 0.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 10.5
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 3.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 2.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 2.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 0.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 0.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 0.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 0.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 0.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.1
FF:10164-103B2 76 years, female 0.1
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 1.6
FF:10176-103C5 60 years, female 1.6
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 2.4
Pig sample Sample description nTPM
Caudate
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Female 0.6
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.0
Putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.0
Sample A Female 0.8
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 2.4
Samples: 4

Max nTPM: 8.3
Min nTPM: 0.0
Sample A Female 8.3
Sample B Female 0.8
Sample C Male 0.5
Sample D Male 0.0
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 5.1
Min nTPM: 0.0
Sample A Female 5.1
Sample B Female 0.0
Sample C Male 0.2
Sample D Male 2.0

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 1.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.2
Sample C Female 0.0
Sample D Female 0.1
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 3.1
Min nTPM: 0.2
Sample A Male 3.1
Sample B Male 0.2
Sample C Female 0.7
Sample D Female 1.8
Ventral forebrain
nTPM: 0.6
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.3
Sample A Male 0.3
Sample B Male 1.4
Sample C Female 0.4
Sample D Female 0.4

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69236879 Antisense, RP_050331_01_D04, Mouse strain C57BL/6J (56 days, male) 0.1
70560328 Antisense, RP_050331_01_D04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
70560328 Antisense, RP_050331_01_D04, Mouse strain C57BL/6J (56 days, male) 0.2
69236879 Antisense, RP_050331_01_D04, Mouse strain C57BL/6J (56 days, male) 0.1

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