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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD99L2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
99.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
97.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
79.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
79.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
73.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
73.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
68.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
68.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
66.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
64.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
63.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
63.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
62.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
61.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
60.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
59.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
58.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
58.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
57.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
57.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
57.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
57.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
56.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
56.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
55.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
55.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
54.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
52.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
52.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
51.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
50.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
49.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
46.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
45.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
44.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
41.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
39.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
39.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
38.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
37.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
36.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
36.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
36.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
34.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
26.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD99L2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.1
Number of samples
231
Samples
Sample
Description
TPM
DO45159
0 years, male, NA, stage:3, alive, 1470 days
70.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
64.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
61.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
58.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
57.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
47.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
45.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
44.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
44.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
41.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
32.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
481
Tumor
1.9
863
Tumor
1.4
393
Tumor
1.2
665
Tumor
1.2
261
Tumor
1.0
483
Tumor
1.0
923
Tumor
1.0
977
Tumor
0.9
698
Normal
0.9
785
Tumor
0.8
1046
Normal
0.8
873
Tumor
0.8
715
Tumor
0.7
137
Tumor
0.7
487
Tumor
0.7
816
Normal
0.7
445
Tumor
0.7
484
Normal
0.6
171
Tumor
0.6
742
Normal
0.6
554
Normal
0.6
824
Normal
0.6
488
Normal
0.6
714
Normal
0.6
721
Tumor
0.6
538
Normal
0.6
533
Tumor
0.5
938
Normal
0.5
636
Normal
0.5
686
Normal
0.5
412
Normal
0.5
954
Normal
0.5
383
Tumor
0.5
546
Normal
0.5
944
Normal
0.5
924
Normal
0.5
862
Normal
0.5
523
Tumor
0.5
615
Tumor
0.5
818
Normal
0.5
882
Normal
0.5
161
Tumor
0.5
755
Tumor
0.5
723
Tumor
0.5
363
Tumor
0.4
878
Normal
0.4
286
Normal
0.4
1022
Normal
0.4
534
Normal
0.4
187
Tumor
0.4
498
Normal
0.4
536
Normal
0.4
696
Normal
0.4
672
Normal
0.4
685
Tumor
0.4
786
Normal
0.4
666
Normal
0.4
716
Normal
0.4
912
Normal
0.4
1026
Normal
0.4
976
Normal
0.4
867
Tumor
0.4
958
Normal
0.4
642
Normal
0.3
557
Tumor
0.3
518
Normal
0.3
922
Normal
0.3
462
Normal
0.3
648
Normal
0.3
525
Tumor
0.3
1016
Normal
0.3
943
Tumor
0.3
364
Normal
0.3
664
Normal
0.3
823
Tumor
0.3
472
Normal
0.3
114
Normal
0.3
968
Normal
0.3
482
Normal
0.3
425
Tumor
0.3
952
Normal
0.3
448
Normal
0.3
572
Normal
0.3
1032
Normal
0.3
852
Normal
0.3
851
Tumor
0.3
756
Normal
0.3
224
Normal
0.3
218
Normal
0.3
966
Normal
0.3
414
Normal
0.3
474
Normal
0.3
1028
Normal
0.3
745
Tumor
0.3
778
Normal
0.3
567
Tumor
0.3
376
Normal
0.2
635
Tumor
0.2
222
Normal
0.2
963
Tumor
0.2
196
Normal
0.2
568
Normal
0.2
627
Tumor
0.2
497
Tumor
0.2
384
Normal
0.2
861
Tumor
0.2
1014
Normal
0.2
1043
Tumor
0.2
858
Normal
0.2
724
Normal
0.2
192
Normal
0.2
964
Normal
0.2
344
Normal
0.2
443
Tumor
0.2
124
Normal
0.2
228
Normal
0.2
911
Tumor
0.2
298
Normal
0.2
284
Normal
0.2
426
Normal
0.2
528
Normal
0.2
368
Normal
0.2
983
Tumor
0.2
357
Tumor
0.2
128
Normal
0.2
744
Normal
0.2
1044
Normal
0.2
918
Normal
0.2
444
Normal
0.2
394
Normal
0.2
313
Tumor
0.2
396
Normal
0.2
185
Tumor
0.2
628
Normal
0.2
618
Normal
0.2
874
Normal
0.2
148
Normal
0.1
146
Normal
0.1
574
Normal
0.1
616
Normal
0.1
424
Normal
0.1
722
Normal
0.1
537
Tumor
0.1
125
Tumor
0.1
527
Tumor
0.1
132
Normal
0.1
342
Normal
0.1
212
Normal
0.1
857
Tumor
0.1
387
Tumor
0.1
564
Normal
0.1
526
Normal
0.1
352
Normal
0.1
433
Tumor
0.1
162
Normal
0.1
142
Normal
0.1
432
Normal
0.1
984
Normal
0.1
214
Normal
0.1
514
Normal
0.1
343
Tumor
0.1
354
Normal
0.1
1041
Tumor
0.1
478
Normal
0.1
738
Normal
0.1
358
Normal
0.1
1025
Tumor
0.1
921
Tumor
0.1
777
Tumor
0.1
473
Tumor
0.1
456
Normal
0.1
884
Normal
0.1
392
Normal
0.0
232
Normal
0.0
516
Normal
0.0
813
Tumor
0.0
388
Normal
0.0
647
Tumor
0.0
864
Normal
0.0
956
Normal
0.0
493
Tumor
0.0
746
Normal
0.0
223
Tumor
0.0
728
Normal
0.0
1042
Normal
0.0
428
Normal
0.0
421
Tumor
0.0
815
Tumor
0.0
868
Normal
0.0
111
Normal
0.0
926
Normal
0.0
314
Normal
0.0
553
Tumor
0.0
452
Normal
0.0
415
Tumor
0.0
524
Normal
0.0
466
Normal
0.0
231
Tumor
0.0
283
Tumor
0.0
914
Normal
0.0
1045
Tumor
0.0
361
Tumor
0.0
446
Normal
0.0
515
Tumor
0.0
558
Normal
0.0
186
Normal
0.0
332
Normal
0.0
423
Tumor
0.0
965
Tumor
-0.1
113
Tumor
-0.1
386
Normal
-0.1
915
Tumor
-0.1
981
Tumor
-0.1
925
Tumor
-0.1
468
Normal
-0.1
278
Normal
-0.1
881
Tumor
-0.1
916
Normal
-0.1
126
Normal
-0.1
138
Normal
-0.1
494
Normal
-0.1
312
Normal
-0.1
257
Tumor
-0.1
272
Normal
-0.1
727
Tumor
-0.1
416
Normal
-0.1
112
Tumor
-0.1
866
Normal
-0.1
1021
Tumor
-0.1
563
Tumor
-0.1
217
Tumor
-0.1
427
Tumor
-0.1
975
Tumor
-0.1
662
Normal
-0.1
356
Normal
-0.1
434
Normal
-0.1
982
Normal
-0.1
913
Tumor
-0.1
741
Tumor
-0.1
455
Tumor
-0.2
545
Tumor
-0.2
267
Tumor
-0.2
1013
Tumor
-0.2
268
Normal
-0.2
461
Tumor
-0.2
713
Tumor
-0.2
136
Normal
-0.2
492
Normal
-0.2
127
Tumor
-0.2
213
Tumor
-0.2
814
Normal
-0.2
465
Tumor
-0.2
422
Normal
-0.2
362
Normal
-0.2
467
Tumor
-0.2
367
Tumor
-0.2
297
Tumor
-0.2
464
Normal
-0.2
211
Tumor
-0.3
366
Normal
-0.3
262
Normal
-0.3
463
Tumor
-0.3
436
Normal
-0.3
328
Normal
-0.3
172
Normal
-0.3
491
Tumor
-0.3
145
Tumor
-0.3
341
Tumor
-0.3
1015
Tumor
-0.3
953
Tumor
-0.3
258
Normal
-0.3
978
Normal
-0.3
451
Tumor
-0.3
311
Tumor
-0.3
1027
Tumor
-0.3
573
Tumor
-0.3
883
Tumor
-0.3
447
Tumor
-0.3
695
Tumor
-0.3
188
Normal
-0.3
191
Tumor
-0.4
517
Tumor
-0.4
351
Tumor
-0.4
195
Tumor
-0.4
413
Tumor
-0.4
955
Tumor
-0.4
431
Tumor
-0.4
227
Tumor
-0.4
477
Tumor
-0.4
917
Tumor
-0.4
737
Tumor
-0.4
123
Tumor
-0.4
937
Tumor
-0.5
435
Tumor
-0.5
411
Tumor
-0.5
147
Tumor
-0.5
327
Tumor
-0.5
513
Tumor
-0.5
957
Tumor
-0.5
571
Tumor
-0.5
135
Tumor
-0.5
697
Tumor
-0.5
353
Tumor
-0.5
391
Tumor
-0.5
221
Tumor
-0.6
331
Tumor
-0.6
865
Tumor
-0.6
277
Tumor
-0.6
141
Tumor
-0.6
817
Tumor
-0.6
375
Tumor
-0.6
1031
Tumor
-0.6
641
Tumor
-0.6
365
Tumor
-0.7
355
Tumor
-0.7
663
Tumor
-0.7
471
Tumor
-0.7
131
Tumor
-0.7
671
Tumor
-0.7
967
Tumor
-0.7
535
Tumor
-0.7
617
Tumor
-0.8
271
Tumor
-0.8
661
Tumor
-0.9
877
Tumor
-0.9
951
Tumor
-1.1
395
Tumor
-1.2
385
Tumor
-1.4
743
Tumor
-1.4
285
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
