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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBL4A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
86.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
76.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
71.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
68.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
64.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
63.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
60.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
58.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
54.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
54.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
53.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
52.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
51.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
51.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
47.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
44.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
44.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
41.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
40.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
40.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
38.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
38.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
33.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
32.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
31.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
30.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBL4A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
231
Samples
Sample
Description
TPM
DO50785
0 years, male, NA, stage:4, dead, 90 days
66.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
47.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
41.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
40.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.2
635
Tumor
1.0
1013
Tumor
1.0
513
Tumor
1.0
351
Tumor
0.8
313
Tumor
0.8
171
Tumor
0.8
261
Tumor
0.7
527
Tumor
0.7
1027
Tumor
0.7
647
Tumor
0.7
857
Tumor
0.6
147
Tumor
0.6
627
Tumor
0.6
277
Tumor
0.6
573
Tumor
0.5
785
Tumor
0.5
665
Tumor
0.5
331
Tumor
0.5
443
Tumor
0.5
977
Tumor
0.5
285
Tumor
0.5
865
Tumor
0.5
267
Tumor
0.5
851
Tumor
0.5
923
Tumor
0.5
755
Tumor
0.5
515
Tumor
0.5
663
Tumor
0.4
1041
Tumor
0.4
745
Tumor
0.4
221
Tumor
0.4
393
Tumor
0.4
523
Tumor
0.4
365
Tumor
0.4
925
Tumor
0.4
863
Tumor
0.4
312
Normal
0.4
913
Tumor
0.4
955
Tumor
0.4
641
Tumor
0.4
423
Tumor
0.4
697
Tumor
0.4
813
Tumor
0.4
257
Tumor
0.4
545
Tumor
0.4
375
Tumor
0.3
231
Tumor
0.3
921
Tumor
0.3
361
Tumor
0.3
911
Tumor
0.3
777
Tumor
0.3
983
Tumor
0.3
571
Tumor
0.3
671
Tumor
0.3
445
Tumor
0.3
314
Normal
0.3
137
Tumor
0.3
135
Tumor
0.3
937
Tumor
0.3
433
Tumor
0.3
431
Tumor
0.3
953
Tumor
0.3
311
Tumor
0.3
861
Tumor
0.3
557
Tumor
0.3
721
Tumor
0.3
553
Tumor
0.3
741
Tumor
0.2
127
Tumor
0.2
411
Tumor
0.2
278
Normal
0.2
413
Tumor
0.2
478
Normal
0.2
125
Tumor
0.2
432
Normal
0.2
297
Tumor
0.2
537
Tumor
0.2
1045
Tumor
0.2
1021
Tumor
0.2
298
Normal
0.2
123
Tumor
0.2
481
Tumor
0.2
367
Tumor
0.2
514
Normal
0.2
341
Tumor
0.2
951
Tumor
0.2
483
Tumor
0.2
737
Tumor
0.2
446
Normal
0.2
271
Tumor
0.2
873
Tumor
0.2
727
Tumor
0.2
493
Tumor
0.2
444
Normal
0.2
436
Normal
0.2
518
Normal
0.2
327
Tumor
0.2
387
Tumor
0.2
223
Tumor
0.2
463
Tumor
0.1
526
Normal
0.1
535
Tumor
0.1
222
Normal
0.1
447
Tumor
0.1
427
Tumor
0.1
466
Normal
0.1
978
Normal
0.1
497
Tumor
0.1
957
Tumor
0.1
211
Tumor
0.1
558
Normal
0.1
455
Tumor
0.1
554
Normal
0.1
982
Normal
0.1
1043
Tumor
0.1
695
Tumor
0.1
428
Normal
0.1
724
Normal
0.1
516
Normal
0.1
414
Normal
0.1
533
Tumor
0.1
227
Tumor
0.1
424
Normal
0.1
648
Normal
0.1
213
Tumor
0.1
572
Normal
0.1
1015
Tumor
0.1
136
Normal
0.1
881
Tumor
0.1
465
Tumor
0.1
1014
Normal
0.1
814
Normal
0.1
915
Tumor
0.1
196
Normal
0.1
786
Normal
0.1
192
Normal
0.1
217
Tumor
0.1
395
Tumor
0.1
464
Normal
0.1
162
Normal
0.1
943
Tumor
0.1
357
Tumor
0.1
355
Tumor
0.1
1016
Normal
0.1
944
Normal
0.1
868
Normal
0.1
434
Normal
0.1
482
Normal
0.1
525
Tumor
0.1
332
Normal
0.1
484
Normal
0.1
391
Tumor
0.1
487
Tumor
0.1
858
Normal
0.1
981
Tumor
0.1
343
Tumor
0.0
467
Tumor
0.0
498
Normal
0.0
224
Normal
0.0
494
Normal
0.0
385
Tumor
0.0
574
Normal
0.0
642
Normal
0.0
1046
Normal
0.0
491
Tumor
0.0
524
Normal
0.0
283
Tumor
0.0
954
Normal
0.0
746
Normal
0.0
984
Normal
0.0
488
Normal
0.0
664
Normal
0.0
383
Tumor
0.0
564
Normal
0.0
195
Tumor
0.0
448
Normal
0.0
722
Normal
0.0
536
Normal
0.0
715
Tumor
0.0
884
Normal
0.0
132
Normal
0.0
392
Normal
0.0
145
Tumor
0.0
815
Tumor
0.0
185
Tumor
0.0
161
Tumor
0.0
422
Normal
0.0
187
Tumor
0.0
1042
Normal
0.0
473
Tumor
0.0
698
Normal
0.0
914
Normal
0.0
394
Normal
0.0
472
Normal
0.0
714
Normal
0.0
534
Normal
0.0
148
Normal
0.0
468
Normal
0.0
967
Tumor
0.0
142
Normal
-0.1
882
Normal
-0.1
965
Tumor
-0.1
874
Normal
-0.1
546
Normal
-0.1
426
Normal
-0.1
926
Normal
-0.1
938
Normal
-0.1
141
Tumor
-0.1
661
Tumor
-0.1
963
Tumor
-0.1
1028
Normal
-0.1
912
Normal
-0.1
1032
Normal
-0.1
352
Normal
-0.1
328
Normal
-0.1
742
Normal
-0.1
952
Normal
-0.1
421
Tumor
-0.1
474
Normal
-0.1
356
Normal
-0.1
686
Normal
-0.1
284
Normal
-0.1
817
Tumor
-0.1
738
Normal
-0.1
756
Normal
-0.1
191
Tumor
-0.1
172
Normal
-0.1
396
Normal
-0.1
568
Normal
-0.1
376
Normal
-0.1
1025
Tumor
-0.1
452
Normal
-0.1
918
Normal
-0.1
563
Tumor
-0.1
212
Normal
-0.1
917
Tumor
-0.1
864
Normal
-0.1
353
Tumor
-0.1
138
Normal
-0.1
567
Tumor
-0.1
131
Tumor
-0.1
964
Normal
-0.1
272
Normal
-0.1
618
Normal
-0.1
866
Normal
-0.1
456
Normal
-0.1
824
Normal
-0.1
128
Normal
-0.1
728
Normal
-0.1
662
Normal
-0.1
716
Normal
-0.1
528
Normal
-0.1
368
Normal
-0.1
366
Normal
-0.1
1044
Normal
-0.1
435
Tumor
-0.1
386
Normal
-0.1
976
Normal
-0.1
816
Normal
-0.1
146
Normal
-0.1
262
Normal
-0.1
778
Normal
-0.1
342
Normal
-0.1
232
Normal
-0.1
1022
Normal
-0.2
358
Normal
-0.2
883
Tumor
-0.2
538
Normal
-0.2
186
Normal
-0.2
461
Tumor
-0.2
188
Normal
-0.2
636
Normal
-0.2
916
Normal
-0.2
113
Tumor
-0.2
218
Normal
-0.2
462
Normal
-0.2
1031
Tumor
-0.2
852
Normal
-0.2
968
Normal
-0.2
666
Normal
-0.2
696
Normal
-0.2
818
Normal
-0.2
477
Tumor
-0.2
214
Normal
-0.2
922
Normal
-0.2
286
Normal
-0.2
492
Normal
-0.2
388
Normal
-0.2
124
Normal
-0.2
362
Normal
-0.2
258
Normal
-0.2
268
Normal
-0.2
126
Normal
-0.2
878
Normal
-0.2
958
Normal
-0.2
416
Normal
-0.2
867
Tumor
-0.2
862
Normal
-0.2
744
Normal
-0.3
344
Normal
-0.3
451
Tumor
-0.3
425
Tumor
-0.3
354
Normal
-0.3
1026
Normal
-0.3
956
Normal
-0.3
628
Normal
-0.3
114
Normal
-0.3
975
Tumor
-0.3
966
Normal
-0.3
877
Tumor
-0.3
723
Tumor
-0.3
615
Tumor
-0.3
616
Normal
-0.3
713
Tumor
-0.3
672
Normal
-0.3
743
Tumor
-0.3
228
Normal
-0.3
412
Normal
-0.3
384
Normal
-0.3
364
Normal
-0.3
517
Tumor
-0.3
415
Tumor
-0.4
924
Normal
-0.4
112
Tumor
-0.4
111
Normal
-0.4
617
Tumor
-0.5
363
Tumor
-0.6
823
Tumor
-0.6
471
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
