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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35A2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 1.63
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.00079
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
31%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
54%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
83.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
71.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
69.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
63.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
61.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
55.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
50.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
47.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
46.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
43.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
42.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
39.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
36.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
35.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
31.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC35A2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: 2.14
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
0.000010
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
39%
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
78%
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.8
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
74.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
257
Tumor
1.0
477
Tumor
0.9
351
Tumor
0.9
171
Tumor
0.9
473
Tumor
0.8
261
Tumor
0.8
487
Tumor
0.8
557
Tumor
0.7
211
Tumor
0.7
231
Tumor
0.7
391
Tumor
0.6
411
Tumor
0.6
221
Tumor
0.6
965
Tumor
0.6
267
Tumor
0.6
647
Tumor
0.6
471
Tumor
0.5
857
Tumor
0.5
695
Tumor
0.5
571
Tumor
0.5
527
Tumor
0.5
883
Tumor
0.5
617
Tumor
0.5
1027
Tumor
0.5
573
Tumor
0.5
1013
Tumor
0.5
951
Tumor
0.4
745
Tumor
0.4
861
Tumor
0.4
123
Tumor
0.4
921
Tumor
0.4
727
Tumor
0.4
913
Tumor
0.4
341
Tumor
0.4
963
Tumor
0.4
881
Tumor
0.4
481
Tumor
0.4
873
Tumor
0.4
227
Tumor
0.3
327
Tumor
0.3
1021
Tumor
0.3
525
Tumor
0.3
713
Tumor
0.3
567
Tumor
0.3
865
Tumor
0.3
697
Tumor
0.3
517
Tumor
0.3
523
Tumor
0.3
863
Tumor
0.3
635
Tumor
0.3
741
Tumor
0.3
416
Normal
0.3
533
Tumor
0.3
285
Tumor
0.3
851
Tumor
0.3
925
Tumor
0.3
445
Tumor
0.3
911
Tumor
0.3
286
Normal
0.2
112
Tumor
0.2
641
Tumor
0.2
311
Tumor
0.2
482
Normal
0.2
524
Normal
0.2
518
Normal
0.2
433
Tumor
0.2
217
Tumor
0.2
412
Normal
0.2
526
Normal
0.2
431
Tumor
0.2
957
Tumor
0.2
563
Tumor
0.2
817
Tumor
0.2
923
Tumor
0.2
385
Tumor
0.2
954
Normal
0.2
615
Tumor
0.2
685
Tumor
0.2
785
Tumor
0.2
858
Normal
0.2
364
Normal
0.2
515
Tumor
0.2
363
Tumor
0.2
977
Tumor
0.2
824
Normal
0.2
1016
Normal
0.2
777
Tumor
0.1
1045
Tumor
0.1
474
Normal
0.1
981
Tumor
0.1
1046
Normal
0.1
926
Normal
0.1
558
Normal
0.1
937
Tumor
0.1
435
Tumor
0.1
983
Tumor
0.1
415
Tumor
0.1
814
Normal
0.1
514
Normal
0.1
271
Tumor
0.1
922
Normal
0.1
353
Tumor
0.1
127
Tumor
0.1
462
Normal
0.1
393
Tumor
0.1
145
Tumor
0.1
572
Normal
0.1
328
Normal
0.1
918
Normal
0.1
778
Normal
0.1
982
Normal
0.1
722
Normal
0.1
915
Tumor
0.1
472
Normal
0.1
162
Normal
0.1
553
Tumor
0.1
427
Tumor
0.1
864
Normal
0.1
493
Tumor
0.1
756
Normal
0.1
142
Normal
0.1
723
Tumor
0.0
228
Normal
0.0
461
Tumor
0.0
823
Tumor
0.0
944
Normal
0.0
277
Tumor
0.0
815
Tumor
0.0
816
Normal
0.0
222
Normal
0.0
852
Normal
0.0
113
Tumor
0.0
213
Tumor
0.0
917
Tumor
0.0
877
Tumor
0.0
483
Tumor
0.0
187
Tumor
0.0
874
Normal
0.0
172
Normal
0.0
214
Normal
0.0
714
Normal
0.0
356
Normal
0.0
195
Tumor
0.0
313
Tumor
0.0
964
Normal
0.0
484
Normal
0.0
278
Normal
0.0
498
Normal
0.0
696
Normal
0.0
786
Normal
0.0
395
Tumor
0.0
698
Normal
0.0
148
Normal
0.0
1014
Normal
0.0
465
Tumor
0.0
813
Tumor
0.0
192
Normal
0.0
574
Normal
0.0
357
Tumor
0.0
298
Normal
0.0
916
Normal
0.0
131
Tumor
0.0
147
Tumor
0.0
976
Normal
0.0
955
Tumor
0.0
218
Normal
0.0
956
Normal
0.0
537
Tumor
0.0
938
Normal
-0.1
755
Tumor
-0.1
746
Normal
-0.1
686
Normal
-0.1
188
Normal
-0.1
186
Normal
-0.1
284
Normal
-0.1
968
Normal
-0.1
528
Normal
-0.1
516
Normal
-0.1
924
Normal
-0.1
721
Tumor
-0.1
196
Normal
-0.1
564
Normal
-0.1
1031
Tumor
-0.1
1015
Tumor
-0.1
332
Normal
-0.1
728
Normal
-0.1
262
Normal
-0.1
436
Normal
-0.1
355
Tumor
-0.1
191
Tumor
-0.1
975
Tumor
-0.1
212
Normal
-0.1
283
Tumor
-0.1
878
Normal
-0.1
488
Normal
-0.1
978
Normal
-0.1
466
Normal
-0.1
1026
Normal
-0.1
744
Normal
-0.1
628
Normal
-0.1
1025
Tumor
-0.1
953
Tumor
-0.1
866
Normal
-0.1
367
Tumor
-0.1
513
Tumor
-0.1
554
Normal
-0.1
135
Tumor
-0.1
535
Tumor
-0.1
862
Normal
-0.1
818
Normal
-0.1
494
Normal
-0.1
1044
Normal
-0.1
958
Normal
-0.1
491
Tumor
-0.1
943
Tumor
-0.1
867
Tumor
-0.1
882
Normal
-0.2
314
Normal
-0.2
966
Normal
-0.2
161
Tumor
-0.2
952
Normal
-0.2
642
Normal
-0.2
297
Tumor
-0.2
232
Normal
-0.2
224
Normal
-0.2
868
Normal
-0.2
451
Tumor
-0.2
984
Normal
-0.2
423
Tumor
-0.2
1032
Normal
-0.2
742
Normal
-0.2
618
Normal
-0.2
448
Normal
-0.2
443
Tumor
-0.2
884
Normal
-0.2
1043
Tumor
-0.2
914
Normal
-0.2
724
Normal
-0.2
536
Normal
-0.2
312
Normal
-0.2
568
Normal
-0.2
737
Tumor
-0.2
478
Normal
-0.3
627
Tumor
-0.3
343
Tumor
-0.3
128
Normal
-0.3
716
Normal
-0.3
492
Normal
-0.3
912
Normal
-0.3
738
Normal
-0.3
534
Normal
-0.3
422
Normal
-0.3
223
Tumor
-0.3
447
Tumor
-0.3
111
Normal
-0.3
137
Tumor
-0.3
456
Normal
-0.3
125
Tumor
-0.3
146
Normal
-0.3
185
Tumor
-0.3
126
Normal
-0.3
352
Normal
-0.3
464
Normal
-0.3
141
Tumor
-0.3
383
Tumor
-0.3
715
Tumor
-0.3
421
Tumor
-0.3
672
Normal
-0.3
463
Tumor
-0.3
648
Normal
-0.3
468
Normal
-0.3
545
Tumor
-0.3
426
Normal
-0.4
664
Normal
-0.4
662
Normal
-0.4
361
Tumor
-0.4
136
Normal
-0.4
967
Tumor
-0.4
272
Normal
-0.4
138
Normal
-0.4
331
Tumor
-0.4
616
Normal
-0.4
424
Normal
-0.4
663
Tumor
-0.4
396
Normal
-0.4
268
Normal
-0.4
354
Normal
-0.4
665
Tumor
-0.4
452
Normal
-0.4
1022
Normal
-0.4
1028
Normal
-0.4
546
Normal
-0.4
132
Normal
-0.4
414
Normal
-0.5
344
Normal
-0.5
434
Normal
-0.5
114
Normal
-0.5
384
Normal
-0.5
538
Normal
-0.5
365
Tumor
-0.5
376
Normal
-0.5
446
Normal
-0.5
636
Normal
-0.5
428
Normal
-0.5
497
Tumor
-0.5
666
Normal
-0.5
432
Normal
-0.5
258
Normal
-0.5
671
Tumor
-0.5
124
Normal
-0.6
386
Normal
-0.6
368
Normal
-0.6
366
Normal
-0.6
375
Tumor
-0.6
413
Tumor
-0.6
387
Tumor
-0.6
358
Normal
-0.6
444
Normal
-0.6
392
Normal
-0.6
455
Tumor
-0.7
394
Normal
-0.7
743
Tumor
-0.7
1041
Tumor
-0.7
362
Normal
-0.7
388
Normal
-0.7
342
Normal
-0.7
467
Tumor
-0.7
425
Tumor
-0.8
1042
Normal
-0.8
661
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.