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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FMR1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
62.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
50.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
47.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
42.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
39.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
36.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
30.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
26.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FMR1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
231
Samples
Sample
Description
TPM
DO45099
0 years, male, NA, stage:3, alive, 1590 days
60.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
59.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
55.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
54.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
43.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
43.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
41.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
39.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
37.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
35.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
34.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
32.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
31.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
313
Tumor
1.0
221
Tumor
0.9
977
Tumor
0.9
112
Tumor
0.9
1027
Tumor
0.8
1013
Tumor
0.8
431
Tumor
0.8
331
Tumor
0.7
527
Tumor
0.7
641
Tumor
0.7
647
Tumor
0.7
1031
Tumor
0.6
557
Tumor
0.6
425
Tumor
0.6
171
Tumor
0.6
553
Tumor
0.6
953
Tumor
0.6
343
Tumor
0.6
411
Tumor
0.6
137
Tumor
0.6
923
Tumor
0.6
471
Tumor
0.6
951
Tumor
0.6
477
Tumor
0.6
261
Tumor
0.6
737
Tumor
0.6
817
Tumor
0.6
231
Tumor
0.6
473
Tumor
0.6
285
Tumor
0.5
815
Tumor
0.5
863
Tumor
0.5
357
Tumor
0.5
533
Tumor
0.5
957
Tumor
0.5
857
Tumor
0.5
497
Tumor
0.5
873
Tumor
0.5
883
Tumor
0.5
125
Tumor
0.5
443
Tumor
0.4
483
Tumor
0.4
921
Tumor
0.4
1041
Tumor
0.4
1021
Tumor
0.4
487
Tumor
0.4
393
Tumor
0.4
1043
Tumor
0.4
481
Tumor
0.4
851
Tumor
0.4
537
Tumor
0.4
861
Tumor
0.4
375
Tumor
0.4
975
Tumor
0.4
433
Tumor
0.3
355
Tumor
0.3
685
Tumor
0.3
745
Tumor
0.3
813
Tumor
0.3
665
Tumor
0.3
865
Tumor
0.3
567
Tumor
0.3
721
Tumor
0.3
741
Tumor
0.3
445
Tumor
0.3
1025
Tumor
0.3
427
Tumor
0.3
777
Tumor
0.3
663
Tumor
0.3
383
Tumor
0.3
161
Tumor
0.2
465
Tumor
0.2
147
Tumor
0.2
135
Tumor
0.2
451
Tumor
0.2
271
Tumor
0.2
493
Tumor
0.2
127
Tumor
0.2
257
Tumor
0.2
341
Tumor
0.2
563
Tumor
0.2
814
Normal
0.2
715
Tumor
0.2
785
Tumor
0.2
421
Tumor
0.2
823
Tumor
0.2
695
Tumor
0.2
463
Tumor
0.1
363
Tumor
0.1
915
Tumor
0.1
627
Tumor
0.1
937
Tumor
0.1
523
Tumor
0.1
881
Tumor
0.1
1022
Normal
0.1
415
Tumor
0.1
467
Tumor
0.1
141
Tumor
0.1
954
Normal
0.1
963
Tumor
0.1
123
Tumor
0.1
131
Tumor
0.0
573
Tumor
0.0
367
Tumor
0.0
416
Normal
0.0
635
Tumor
0.0
211
Tumor
0.0
515
Tumor
0.0
423
Tumor
0.0
277
Tumor
0.0
538
Normal
0.0
867
Tumor
0.0
554
Normal
0.0
361
Tumor
0.0
327
Tumor
N/A
113
Tumor
0.0
965
Tumor
0.0
191
Tumor
0.0
461
Tumor
0.0
1028
Normal
0.0
435
Tumor
0.0
944
Normal
0.0
1042
Normal
0.0
981
Tumor
-0.1
943
Tumor
-0.1
525
Tumor
-0.1
878
Normal
-0.1
924
Normal
-0.1
498
Normal
-0.1
227
Tumor
-0.1
455
Tumor
-0.1
267
Tumor
-0.1
1015
Tumor
-0.1
724
Normal
-0.1
686
Normal
-0.1
536
Normal
-0.1
364
Normal
-0.1
384
Normal
-0.1
284
Normal
-0.1
132
Normal
-0.1
328
Normal
-0.1
534
Normal
-0.1
478
Normal
-0.1
918
Normal
-0.1
546
Normal
-0.1
283
Tumor
-0.1
558
Normal
-0.1
615
Tumor
-0.1
491
Tumor
-0.1
524
Normal
-0.1
185
Tumor
-0.1
356
Normal
-0.1
955
Tumor
-0.1
714
Normal
-0.1
661
Tumor
-0.1
138
Normal
-0.1
351
Tumor
-0.1
447
Tumor
-0.1
716
Normal
-0.1
746
Normal
-0.1
958
Normal
-0.1
967
Tumor
-0.1
911
Tumor
-0.1
882
Normal
-0.1
145
Tumor
-0.1
412
Normal
-0.1
448
Normal
-0.1
513
Tumor
-0.1
1045
Tumor
-0.1
488
Normal
-0.1
365
Tumor
-0.1
1026
Normal
-0.1
142
Normal
-0.1
1014
Normal
-0.1
916
Normal
-0.1
474
Normal
-0.1
978
Normal
-0.1
913
Tumor
-0.1
1044
Normal
-0.1
572
Normal
-0.1
146
Normal
-0.1
314
Normal
-0.1
422
Normal
-0.1
224
Normal
-0.1
1046
Normal
-0.2
391
Tumor
-0.2
353
Tumor
-0.2
864
Normal
-0.2
528
Normal
-0.2
922
Normal
-0.2
1032
Normal
-0.2
984
Normal
-0.2
124
Normal
-0.2
696
Normal
-0.2
494
Normal
-0.2
354
Normal
-0.2
387
Tumor
-0.2
268
Normal
-0.2
914
Normal
-0.2
672
Normal
-0.2
648
Normal
-0.2
526
Normal
-0.2
1016
Normal
-0.2
966
Normal
-0.2
114
Normal
-0.2
722
Normal
-0.2
172
Normal
-0.2
286
Normal
-0.2
756
Normal
-0.2
217
Tumor
-0.2
232
Normal
-0.2
664
Normal
-0.2
925
Tumor
-0.2
662
Normal
-0.2
212
Normal
-0.2
938
Normal
-0.2
148
Normal
-0.2
568
Normal
-0.2
262
Normal
-0.2
352
Normal
-0.2
713
Tumor
-0.2
518
Normal
-0.2
628
Normal
-0.2
964
Normal
-0.2
136
Normal
-0.2
956
Normal
-0.2
926
Normal
-0.2
472
Normal
-0.2
462
Normal
-0.2
618
Normal
-0.2
484
Normal
-0.2
187
Tumor
-0.2
636
Normal
-0.2
912
Normal
-0.2
742
Normal
-0.2
395
Tumor
-0.2
868
Normal
-0.2
128
Normal
-0.2
982
Normal
-0.2
852
Normal
-0.2
186
Normal
-0.2
744
Normal
-0.2
545
Tumor
-0.2
376
Normal
-0.2
126
Normal
-0.2
482
Normal
-0.2
755
Tumor
-0.2
228
Normal
-0.2
884
Normal
-0.2
111
Normal
-0.2
162
Normal
-0.2
195
Tumor
-0.2
468
Normal
-0.2
738
Normal
-0.2
214
Normal
-0.2
976
Normal
-0.2
444
Normal
-0.2
698
Normal
-0.2
366
Normal
-0.2
874
Normal
-0.2
564
Normal
-0.2
983
Tumor
-0.2
218
Normal
-0.2
642
Normal
-0.2
434
Normal
-0.3
196
Normal
-0.3
258
Normal
-0.3
278
Normal
-0.3
666
Normal
-0.3
272
Normal
-0.3
818
Normal
-0.3
786
Normal
-0.3
727
Tumor
-0.3
436
Normal
-0.3
452
Normal
-0.3
824
Normal
-0.3
464
Normal
-0.3
671
Tumor
-0.3
362
Normal
-0.3
516
Normal
-0.3
778
Normal
-0.3
456
Normal
-0.3
223
Tumor
-0.3
297
Tumor
-0.3
396
Normal
-0.3
617
Tumor
-0.3
492
Normal
-0.3
188
Normal
-0.3
952
Normal
-0.3
514
Normal
-0.3
368
Normal
-0.3
358
Normal
-0.3
858
Normal
-0.3
816
Normal
-0.3
342
Normal
-0.3
571
Tumor
-0.3
426
Normal
-0.3
428
Normal
-0.3
392
Normal
-0.3
344
Normal
-0.3
517
Tumor
-0.3
616
Normal
-0.3
866
Normal
-0.3
298
Normal
-0.3
192
Normal
-0.3
862
Normal
-0.3
697
Tumor
-0.3
466
Normal
-0.4
968
Normal
-0.4
446
Normal
-0.4
424
Normal
-0.4
312
Normal
-0.4
386
Normal
-0.4
723
Tumor
-0.4
388
Normal
-0.4
728
Normal
-0.4
414
Normal
-0.4
574
Normal
-0.4
917
Tumor
-0.4
222
Normal
-0.4
332
Normal
-0.4
413
Tumor
-0.4
385
Tumor
-0.4
432
Normal
-0.5
394
Normal
-0.5
311
Tumor
-0.5
535
Tumor
-0.5
743
Tumor
-0.7
877
Tumor
-0.8
213
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
