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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
F9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
70.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
452.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
424.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
418.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
404.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
399.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
360.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
332.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
318.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
316.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
311.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
275.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
266.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
253.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
251.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
250.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
241.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
241.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
241.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
239.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
232.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
231.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
224.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
216.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
209.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
201.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
195.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
191.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
190.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
188.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
186.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
185.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
185.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
183.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
181.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
181.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
178.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
176.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
176.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
174.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
172.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
170.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
166.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
162.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
160.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
160.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
159.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
158.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
158.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
157.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
156.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
152.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
151.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
149.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
144.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
143.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
140.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
136.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
136.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
133.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
133.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
130.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
129.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
129.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
123.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
117.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
117.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
116.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
116.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
114.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
114.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
111.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
109.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
108.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
108.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
108.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
107.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
107.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
106.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
106.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
105.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
104.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
101.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
101.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
101.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
100.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
100.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
98.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
98.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
98.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
98.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
97.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
97.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
95.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
95.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
93.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
93.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
92.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
92.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
92.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
91.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
91.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
91.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
91.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
90.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
88.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
88.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
88.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
87.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
85.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
85.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
85.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
84.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
83.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
83.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
83.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
82.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
82.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
81.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
80.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
79.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
79.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
78.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
78.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
78.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
77.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
76.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
75.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
75.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
74.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
73.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
72.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
72.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
71.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
71.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
70.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
70.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
69.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
68.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
68.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
66.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
66.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
66.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
66.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
65.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
65.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
64.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
63.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
63.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
63.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
62.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
59.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
57.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
57.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
57.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
56.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
55.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
55.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
55.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
54.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
54.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
54.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
51.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
51.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
51.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
51.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
49.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
49.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
47.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
46.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
46.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
45.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
43.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
42.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
41.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
41.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
41.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
40.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
40.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
40.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
39.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
39.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
37.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
36.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
36.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
36.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
36.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
28.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
F9 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
83.7
Number of samples
231
Samples
Sample
Description
TPM
DO48760
0 years, female, NA, stage:2, alive, 690 days
392.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
380.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
341.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
327.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
327.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
326.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
325.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
307.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
287.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
278.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
273.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
260.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
249.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
247.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
240.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
238.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
233.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
230.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
224.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
214.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
214.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
212.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
207.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
201.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
197.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
196.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
191.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
190.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
184.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
181.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
181.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
175.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
172.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
169.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
167.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
162.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
160.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
160.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
156.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
152.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
151.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
150.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
150.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
147.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
147.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
144.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
141.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
136.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
136.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
135.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
134.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
134.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
133.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
132.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
129.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
128.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
126.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
125.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
124.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
120.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
120.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
117.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
115.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
115.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
110.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
110.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
108.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
106.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
105.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
104.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
104.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
104.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
104.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
101.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
100.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
99.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
97.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
97.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
97.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
97.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
96.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
95.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
94.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
91.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
91.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
87.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
87.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
82.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
82.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
81.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
81.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
79.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
78.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
74.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
73.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
73.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
73.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
72.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
70.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
70.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
69.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
69.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
69.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
68.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
68.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
68.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
67.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
66.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
64.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
63.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
63.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
63.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
63.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
63.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
62.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
61.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
61.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
60.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
60.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
58.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
56.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
54.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
52.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
50.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
50.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
48.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
47.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
46.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
46.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
46.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
44.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
44.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
42.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
35.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
857
Tumor
1.2
937
Tumor
1.1
615
Tumor
0.9
137
Tumor
0.9
1025
Tumor
0.8
627
Tumor
0.8
1045
Tumor
0.7
755
Tumor
0.7
863
Tumor
0.7
223
Tumor
0.7
192
Normal
0.6
538
Normal
0.6
327
Tumor
0.6
344
Normal
0.6
744
Normal
0.6
911
Tumor
0.6
392
Normal
0.5
981
Tumor
0.5
368
Normal
0.5
878
Normal
0.5
745
Tumor
0.5
874
Normal
0.5
218
Normal
0.5
785
Tumor
0.5
915
Tumor
0.5
777
Tumor
0.4
635
Tumor
0.4
746
Normal
0.4
913
Tumor
0.4
461
Tumor
0.4
952
Normal
0.4
465
Tumor
0.4
342
Normal
0.4
452
Normal
0.4
261
Tumor
0.3
474
Normal
0.3
816
Normal
0.3
554
Normal
0.3
448
Normal
0.3
394
Normal
0.3
142
Normal
0.3
1015
Tumor
0.3
636
Normal
0.3
982
Normal
0.3
492
Normal
0.3
111
Normal
0.3
376
Normal
0.3
737
Tumor
0.3
185
Tumor
0.3
882
Normal
0.3
914
Normal
0.3
393
Tumor
0.3
924
Normal
0.3
124
Normal
0.3
778
Normal
0.3
464
Normal
0.2
574
Normal
0.2
222
Normal
0.2
396
Normal
0.2
1016
Normal
0.2
1026
Normal
0.2
513
Tumor
0.2
436
Normal
0.2
172
Normal
0.2
195
Tumor
0.2
148
Normal
0.2
618
Normal
0.2
146
Normal
0.2
471
Tumor
0.2
445
Tumor
0.2
1031
Tumor
0.2
884
Normal
0.2
141
Tumor
0.2
423
Tumor
0.2
113
Tumor
0.2
186
Normal
0.2
518
Normal
0.2
466
Normal
0.2
162
Normal
0.2
456
Normal
0.2
877
Tumor
0.2
384
Normal
0.2
873
Tumor
0.2
852
Normal
0.2
527
Tumor
0.2
526
Normal
0.2
742
Normal
0.2
517
Tumor
0.2
353
Tumor
0.2
468
Normal
0.2
642
Normal
0.2
365
Tumor
0.1
362
Normal
0.1
672
Normal
0.1
912
Normal
0.1
648
Normal
0.1
864
Normal
0.1
824
Normal
0.1
536
Normal
0.1
568
Normal
0.1
446
Normal
0.1
666
Normal
0.1
462
Normal
0.1
472
Normal
0.1
412
Normal
0.1
455
Tumor
0.1
925
Tumor
0.1
1028
Normal
0.1
523
Tumor
0.1
738
Normal
0.1
114
Normal
0.1
386
Normal
0.1
426
Normal
0.1
664
Normal
0.1
867
Tumor
0.1
515
Tumor
0.1
136
Normal
0.1
138
Normal
0.1
862
Normal
0.1
976
Normal
0.1
866
Normal
0.1
916
Normal
0.1
881
Tumor
0.1
977
Tumor
0.1
498
Normal
0.1
918
Normal
0.1
868
Normal
0.1
414
Normal
0.1
572
Normal
0.1
366
Normal
0.1
422
Normal
0.1
421
Tumor
0.1
696
Normal
0.0
938
Normal
0.0
228
Normal
0.0
922
Normal
0.0
188
Normal
0.0
662
Normal
0.0
516
Normal
0.0
968
Normal
0.0
262
Normal
0.0
217
Tumor
0.0
553
Tumor
0.0
232
Normal
0.0
132
Normal
0.0
258
Normal
0.0
268
Normal
0.0
488
Normal
0.0
278
Normal
0.0
728
Normal
0.0
128
Normal
0.0
698
Normal
0.0
484
Normal
0.0
481
Tumor
0.0
861
Tumor
0.0
921
Tumor
0.0
546
Normal
0.0
328
Normal
0.0
432
Normal
0.0
984
Normal
0.0
818
Normal
0.0
391
Tumor
0.0
741
Tumor
0.0
713
Tumor
0.0
388
Normal
0.0
126
Normal
0.0
271
Tumor
0.0
823
Tumor
0.0
424
Normal
0.0
1022
Normal
0.0
858
Normal
0.0
212
Normal
0.0
628
Normal
0.0
196
Normal
0.0
955
Tumor
0.0
352
Normal
0.0
1041
Tumor
0.0
786
Normal
0.0
286
Normal
0.0
564
Normal
0.0
411
Tumor
0.0
361
Tumor
0.0
358
Normal
-0.1
716
Normal
-0.1
1046
Normal
-0.1
298
Normal
-0.1
221
Tumor
-0.1
756
Normal
-0.1
956
Normal
-0.1
1014
Normal
-0.1
616
Normal
-0.1
954
Normal
-0.1
272
Normal
-0.1
428
Normal
-0.1
284
Normal
-0.1
224
Normal
-0.1
312
Normal
-0.1
966
Normal
-0.1
528
Normal
-0.1
975
Tumor
-0.1
558
Normal
-0.1
467
Tumor
-0.1
473
Tumor
-0.1
354
Normal
-0.1
444
Normal
-0.1
434
Normal
-0.1
714
Normal
-0.1
665
Tumor
-0.1
563
Tumor
-0.1
435
Tumor
-0.1
478
Normal
-0.1
131
Tumor
-0.1
145
Tumor
-0.1
524
Normal
-0.1
617
Tumor
-0.1
214
Normal
-0.1
494
Normal
-0.1
514
Normal
-0.1
534
Normal
-0.1
364
Normal
-0.2
964
Normal
-0.2
926
Normal
-0.2
723
Tumor
-0.2
813
Tumor
-0.2
482
Normal
-0.2
356
Normal
-0.2
533
Tumor
-0.2
944
Normal
-0.2
433
Tumor
-0.2
1043
Tumor
-0.2
341
Tumor
-0.2
416
Normal
-0.2
671
Tumor
-0.2
161
Tumor
-0.2
1044
Normal
-0.2
332
Normal
-0.2
447
Tumor
-0.2
187
Tumor
-0.2
487
Tumor
-0.2
491
Tumor
-0.2
231
Tumor
-0.2
363
Tumor
-0.3
545
Tumor
-0.3
727
Tumor
-0.3
958
Normal
-0.3
963
Tumor
-0.3
525
Tumor
-0.3
1013
Tumor
-0.3
686
Normal
-0.3
277
Tumor
-0.3
483
Tumor
-0.3
715
Tumor
-0.3
451
Tumor
-0.3
743
Tumor
-0.3
477
Tumor
-0.3
883
Tumor
-0.3
285
Tumor
-0.3
1032
Normal
-0.3
171
Tumor
-0.3
314
Normal
-0.3
851
Tumor
-0.3
387
Tumor
-0.3
267
Tumor
-0.3
1042
Normal
-0.4
127
Tumor
-0.4
415
Tumor
-0.4
463
Tumor
-0.4
331
Tumor
-0.4
297
Tumor
-0.4
817
Tumor
-0.4
814
Normal
-0.4
191
Tumor
-0.4
123
Tumor
-0.4
722
Normal
-0.4
978
Normal
-0.4
383
Tumor
-0.4
965
Tumor
-0.4
647
Tumor
-0.4
697
Tumor
-0.4
953
Tumor
-0.5
112
Tumor
-0.5
695
Tumor
-0.5
431
Tumor
-0.5
1021
Tumor
-0.5
357
Tumor
-0.5
257
Tumor
-0.5
685
Tumor
-0.6
557
Tumor
-0.6
227
Tumor
-0.6
367
Tumor
-0.6
147
Tumor
-0.6
443
Tumor
-0.6
721
Tumor
-0.6
493
Tumor
-0.6
917
Tumor
-0.6
724
Normal
-0.6
1027
Tumor
-0.6
943
Tumor
-0.6
571
Tumor
-0.7
923
Tumor
-0.7
283
Tumor
-0.7
641
Tumor
-0.7
343
Tumor
-0.7
425
Tumor
-0.7
355
Tumor
-0.8
313
Tumor
-0.8
537
Tumor
-0.8
497
Tumor
-0.9
413
Tumor
-0.9
957
Tumor
-0.9
427
Tumor
-0.9
375
Tumor
-0.9
395
Tumor
-0.9
967
Tumor
-1.0
125
Tumor
-1.0
213
Tumor
-1.0
311
Tumor
-1.1
135
Tumor
-1.1
865
Tumor
-1.1
983
Tumor
-1.2
567
Tumor
-1.2
211
Tumor
-1.2
573
Tumor
-1.3
535
Tumor
-1.3
951
Tumor
-1.3
663
Tumor
-1.3
815
Tumor
-1.3
385
Tumor
-1.3
351
Tumor
-1.5
661
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.