MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.7 nTPM
HPA Brain:38.5 nTPM
GTEx:16.7 nTPM
FANTOM5:109.9 Scaled Tags Per Million
Pig:56.9 nTPM
Mouse:31.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.3
1870 Female, age 42, unknown 39.5
1833 Male, age 53, unknown 39.3
1830 Male, age 51, unknown 38.5
2828 Female, age 72, unknown 36.1
2219 Male, age 76, both hemispheres 34.8
1827 Male, age 72, unknown 33.2
2019 Male, age 18, unknown 31.5
2411 Female, age 72, unknown 31.1
2666 Male, age 74, left hemisphere 30.1
2586 Male, age 75, left hemisphere 28.6
Dorsal raphe nucleus
nTPM: 33.5
2750 Male, age 76, both hemispheres 39.0
2016 Female, age 72, unknown 35.7
1828 Male, age 53, unknown 32.4
2298 Female, age 72, unknown 31.1
2047 Male, age 72, unknown 29.1
Inferior colliculus
nTPM: 34.6
2849 Male, age 72, unknown 37.9
1848 Female, age 42, unknown 34.5
2097 Female, age 72, unknown 33.9
1890 Male, age 53, unknown 32.0
Median raphe nucleus
nTPM: 32.1
2220 Male, age 76, midline 32.1
Periaquaductal grey, anterior
nTPM: 28.7
1795 Male, age 51, unknown 30.6
2502 Female, age 75, unknown 28.0
1947 Male, age 18, unknown 27.6
Periaquaductal grey, dorsal
nTPM: 37.1
2850 Male, age 76, both hemispheres 43.8
1840 Male, age 53, unknown 37.0
1831 Male, age 72, unknown 36.2
2464 Female, age 72, unknown 31.4
Periaquaductal grey, lateral
nTPM: 36.0
2140 Male, age 76, both hemispheres 43.9
2053 Male, age 18, unknown 34.4
2272 Male, age 74, both hemispheres 29.7
Pretectal area
nTPM: 32.2
2316 Male, age 76, right hemisphere 39.9
2667 Female, age 75, unknown 39.0
2273 Male, age 74, both hemispheres 36.2
1815 Male, age 53, unknown 35.0
2825 Male, age 18, unknown 34.0
2224 Female, age 72, unknown 31.9
1817 Female, age 42, unknown 30.8
2407 Male, age 75, both hemispheres 30.8
1944 Female, age 72, unknown 25.6
1816 Male, age 51, unknown 25.5
2007 Male, age 72, unknown 25.2
Red nucleus
nTPM: 38.5
1865 Male, age 51, unknown 44.5
1821 Female, age 72, unknown 41.3
2503 Female, age 72, unknown 41.3
1904 Male, age 53, unknown 41.2
1954 Female, age 42, unknown 40.5
2823 Male, age 76, right hemisphere 39.5
2227 Male, age 72, unknown 39.3
2785 Male, age 18, unknown 37.9
2769 Male, age 72, unknown 35.7
2725 Female, age 75, unknown 35.5
2588 Male, age 74, left hemisphere 34.2
2584 Male, age 75, left hemisphere 31.1
Substantia nigra
nTPM: 33.2
2409 Female, age 72, unknown 40.5
2241 Male, age 72, unknown 39.6
2699 Male, age 18, unknown 39.4
2590 Female, age 75, unknown 36.1
2665 Male, age 74, both hemispheres 34.1
2583 Male, age 75, right hemisphere 29.4
1889 Female, age 72, unknown 29.3
1851 Male, age 51, unknown 28.8
1916 Female, age 42, unknown 28.1
1941 Male, age 53, unknown 26.5
Superior colliculus
nTPM: 33.3
1913 Female, age 42, unknown 43.6
1995 Male, age 72, unknown 39.1
2587 Male, age 74, left hemisphere 38.9
1839 Male, age 51, unknown 36.2
1895 Male, age 76, right hemisphere 35.5
1796 Male, age 53, unknown 31.0
2261 Male, age 18, unknown 30.1
2668 Female, age 75, unknown 26.9
2664 Male, age 75, both hemispheres 26.2
2087 Female, age 72, unknown 26.0
Ventral tegmental area
nTPM: 31.3
2223 Female, age 72, unknown 33.8
2021 Male, age 53, unknown 33.0
1915 Female, age 42, unknown 31.0
2410 Female, age 72, unknown 30.9
2218 Male, age 76, both hemispheres 30.2
1942 Male, age 51, unknown 28.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 139

Max nTPM: 30.0
Min nTPM: 8.1
Std nTPM: 4.8
Median nTPM: 16.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 30.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 29.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 28.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 26.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 26.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 25.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 24.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 24.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 24.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 24.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 109.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.9
FF:10158-103A5 76 years, female 109.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 56.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.6
Samples: 4

Max nTPM: 60.5
Min nTPM: 45.7
Sample A Female 55.3
Sample B Female 53.0
Sample C Male 45.7
Sample D Male 60.5
Midbrain
nTPM: 56.9
Samples: 4

Max nTPM: 78.4
Min nTPM: 43.6
Sample A Female 78.4
Sample B Female 60.9
Sample C Male 44.5
Sample D Male 43.6
Periaqueductal gray
nTPM: 51.2
Samples: 3

Max nTPM: 54.1
Min nTPM: 45.5
Sample B Female 53.9
Sample C Male 45.5
Sample D Male 54.1
Superior colliculi
nTPM: 50.6
Samples: 4

Max nTPM: 53.6
Min nTPM: 47.4
Sample A Female 48.7
Sample B Female 53.6
Sample C Male 47.4
Sample D Male 52.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.4
Samples: 4

Max nTPM: 34.2
Min nTPM: 28.4
Sample A Male 28.4
Sample B Male 32.0
Sample C Female 34.2
Sample D Female 31.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
72002105 Antisense, RP_050915_02_F12, Mouse strain C57BL/6J (56 days, male) 0.0

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