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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.6
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.8
978
Normal
1.5
966
Normal
1.3
536
Normal
1.3
434
Normal
1.0
721
Tumor
0.9
535
Tumor
0.8
814
Normal
0.8
211
Tumor
0.8
724
Normal
0.8
467
Tumor
0.7
362
Normal
0.7
686
Normal
0.7
478
Normal
0.6
383
Tumor
0.6
456
Normal
0.6
528
Normal
0.6
217
Tumor
0.6
861
Tumor
0.6
124
Normal
0.6
262
Normal
0.6
1016
Normal
0.6
662
Normal
0.6
628
Normal
0.6
138
Normal
0.6
492
Normal
0.6
952
Normal
0.5
563
Tumor
0.5
136
Normal
0.5
984
Normal
0.5
367
Tumor
0.5
954
Normal
0.5
368
Normal
0.5
574
Normal
0.5
716
Normal
0.5
498
Normal
0.5
1044
Normal
0.5
384
Normal
0.5
213
Tumor
0.5
283
Tumor
0.5
554
Normal
0.5
916
Normal
0.5
546
Normal
0.5
446
Normal
0.5
968
Normal
0.5
666
Normal
0.5
482
Normal
0.5
468
Normal
0.5
375
Tumor
0.5
956
Normal
0.4
145
Tumor
0.4
268
Normal
0.4
564
Normal
0.4
1022
Normal
0.4
452
Normal
0.4
212
Normal
0.4
664
Normal
0.4
195
Tumor
0.4
1042
Normal
0.4
462
Normal
0.4
1028
Normal
0.4
573
Tumor
0.4
722
Normal
0.4
636
Normal
0.4
396
Normal
0.4
964
Normal
0.4
538
Normal
0.4
526
Normal
0.4
642
Normal
0.4
385
Tumor
0.4
698
Normal
0.4
696
Normal
0.4
366
Normal
0.4
672
Normal
0.4
391
Tumor
0.4
1032
Normal
0.4
188
Normal
0.4
114
Normal
0.4
618
Normal
0.4
976
Normal
0.3
917
Tumor
0.3
388
Normal
0.3
938
Normal
0.3
851
Tumor
0.3
426
Normal
0.3
224
Normal
0.3
146
Normal
0.3
823
Tumor
0.3
214
Normal
0.3
272
Normal
0.3
192
Normal
0.3
424
Normal
0.3
432
Normal
0.3
874
Normal
0.3
864
Normal
0.3
132
Normal
0.3
778
Normal
0.3
926
Normal
0.3
376
Normal
0.3
414
Normal
0.3
742
Normal
0.3
394
Normal
0.3
494
Normal
0.3
852
Normal
0.3
1031
Tumor
0.3
728
Normal
0.3
858
Normal
0.3
1015
Tumor
0.3
815
Tumor
0.3
558
Normal
0.3
218
Normal
0.3
616
Normal
0.3
466
Normal
0.3
286
Normal
0.3
258
Normal
0.3
474
Normal
0.3
557
Tumor
0.3
714
Normal
0.3
1046
Normal
0.2
356
Normal
0.2
386
Normal
0.2
671
Tumor
0.2
868
Normal
0.2
944
Normal
0.2
568
Normal
0.2
943
Tumor
0.2
148
Normal
0.2
1014
Normal
0.2
137
Tumor
0.2
428
Normal
0.2
713
Tumor
0.2
1043
Tumor
0.2
472
Normal
0.2
232
Normal
0.2
284
Normal
0.2
488
Normal
0.2
481
Tumor
0.2
196
Normal
0.2
416
Normal
0.2
172
Normal
0.2
866
Normal
0.2
534
Normal
0.2
867
Tumor
0.2
982
Normal
0.2
744
Normal
0.2
413
Tumor
0.2
455
Tumor
0.2
142
Normal
0.2
958
Normal
0.2
126
Normal
0.2
491
Tumor
0.1
447
Tumor
0.1
222
Normal
0.1
464
Normal
0.1
186
Normal
0.1
738
Normal
0.1
924
Normal
0.1
261
Tumor
0.1
392
Normal
0.1
111
Normal
0.1
786
Normal
0.1
328
Normal
0.1
862
Normal
0.1
162
Normal
0.1
365
Tumor
0.1
648
Normal
0.1
451
Tumor
0.1
955
Tumor
0.1
1026
Normal
0.1
187
Tumor
0.1
135
Tumor
0.1
387
Tumor
0.1
395
Tumor
0.1
493
Tumor
0.0
444
Normal
0.0
963
Tumor
0.0
617
Tumor
0.0
231
Tumor
0.0
171
Tumor
0.0
228
Normal
0.0
463
Tumor
0.0
191
Tumor
0.0
665
Tumor
0.0
448
Normal
0.0
983
Tumor
0.0
723
Tumor
0.0
818
Normal
0.0
185
Tumor
0.0
813
Tumor
0.0
756
Normal
0.0
141
Tumor
0.0
125
Tumor
0.0
824
Normal
0.0
537
Tumor
0.0
857
Tumor
0.0
685
Tumor
0.0
918
Normal
-0.1
484
Normal
-0.1
364
Normal
-0.1
443
Tumor
-0.1
483
Tumor
-0.1
461
Tumor
-0.1
161
Tumor
-0.1
128
Normal
-0.1
271
Tumor
-0.1
421
Tumor
-0.1
953
Tumor
-0.1
113
Tumor
-0.1
816
Normal
-0.1
422
Normal
-0.1
221
Tumor
-0.1
922
Normal
-0.1
361
Tumor
-0.1
412
Normal
-0.1
615
Tumor
-0.1
975
Tumor
-0.1
925
Tumor
-0.1
571
Tumor
-0.1
915
Tumor
-0.2
863
Tumor
-0.2
436
Normal
-0.2
746
Normal
-0.2
445
Tumor
-0.2
435
Tumor
-0.2
697
Tumor
-0.2
127
Tumor
-0.2
627
Tumor
-0.2
553
Tumor
-0.2
425
Tumor
-0.2
873
Tumor
-0.2
223
Tumor
-0.2
415
Tumor
-0.2
363
Tumor
-0.2
1045
Tumor
-0.3
431
Tumor
-0.3
977
Tumor
-0.3
817
Tumor
-0.3
663
Tumor
-0.3
327
Tumor
-0.3
641
Tumor
-0.3
227
Tumor
-0.3
967
Tumor
-0.3
516
Normal
-0.3
727
Tumor
-0.4
937
Tumor
-0.4
1027
Tumor
-0.4
647
Tumor
-0.4
147
Tumor
-0.4
465
Tumor
-0.4
715
Tumor
-0.4
572
Normal
-0.4
471
Tumor
-0.4
423
Tumor
-0.4
923
Tumor
-0.4
267
Tumor
-0.5
285
Tumor
-0.5
951
Tumor
-0.5
112
Tumor
-0.5
427
Tumor
-0.5
865
Tumor
-0.5
257
Tumor
-0.5
497
Tumor
-0.5
487
Tumor
-0.5
411
Tumor
-0.6
131
Tumor
-0.6
518
Normal
-0.6
1025
Tumor
-0.6
473
Tumor
-0.6
393
Tumor
-0.6
1041
Tumor
-0.6
527
Tumor
-0.6
1021
Tumor
-0.6
533
Tumor
-0.6
635
Tumor
-0.7
433
Tumor
-0.7
517
Tumor
-0.7
981
Tumor
-0.7
355
Tumor
-0.7
741
Tumor
-0.7
477
Tumor
-0.7
965
Tumor
-0.8
545
Tumor
-0.8
515
Tumor
-0.8
755
Tumor
-0.8
514
Normal
-0.9
567
Tumor
-0.9
957
Tumor
-0.9
737
Tumor
-0.9
695
Tumor
-0.9
513
Tumor
-0.9
785
Tumor
-1.0
123
Tumor
-1.0
1013
Tumor
-1.0
524
Normal
-1.1
743
Tumor
-1.1
525
Tumor
-1.2
523
Tumor
-1.2
921
Tumor
-1.2
777
Tumor
-1.4
745
Tumor
-1.5
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
