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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ALG13 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ALG13 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.4
685
Tumor
1.0
857
Tumor
0.9
745
Tumor
0.8
131
Tumor
0.8
431
Tumor
0.7
863
Tumor
0.7
695
Tumor
0.7
517
Tumor
0.7
473
Tumor
0.6
911
Tumor
0.6
435
Tumor
0.5
721
Tumor
0.5
918
Normal
0.5
481
Tumor
0.5
977
Tumor
0.5
393
Tumor
0.5
924
Normal
0.5
171
Tumor
0.5
915
Tumor
0.4
715
Tumor
0.4
527
Tumor
0.4
411
Tumor
0.4
515
Tumor
0.4
571
Tumor
0.4
873
Tumor
0.4
1013
Tumor
0.4
445
Tumor
0.4
922
Normal
0.4
647
Tumor
0.4
497
Tumor
0.4
1021
Tumor
0.4
533
Tumor
0.4
867
Tumor
0.4
813
Tumor
0.4
785
Tumor
0.4
1032
Normal
0.4
425
Tumor
0.4
944
Normal
0.3
696
Normal
0.3
727
Tumor
0.3
957
Tumor
0.3
665
Tumor
0.3
493
Tumor
0.3
514
Normal
0.3
913
Tumor
0.3
523
Tumor
0.3
953
Tumor
0.3
147
Tumor
0.3
824
Normal
0.3
955
Tumor
0.3
1022
Normal
0.3
392
Normal
0.2
636
Normal
0.2
494
Normal
0.2
976
Normal
0.2
1014
Normal
0.2
777
Tumor
0.2
356
Normal
0.2
232
Normal
0.2
261
Tumor
0.2
686
Normal
0.2
627
Tumor
0.2
357
Tumor
0.2
448
Normal
0.2
616
Normal
0.2
866
Normal
0.2
755
Tumor
0.2
354
Normal
0.2
361
Tumor
0.2
258
Normal
0.2
713
Tumor
0.2
364
Normal
0.2
963
Tumor
0.2
818
Normal
0.2
923
Tumor
0.2
452
Normal
0.2
778
Normal
0.2
1046
Normal
0.2
618
Normal
0.2
716
Normal
0.2
1044
Normal
0.2
628
Normal
0.2
882
Normal
0.2
741
Tumor
0.2
538
Normal
0.2
257
Tumor
0.2
954
Normal
0.2
534
Normal
0.2
466
Normal
0.2
975
Tumor
0.1
426
Normal
0.1
127
Tumor
0.1
746
Normal
0.1
878
Normal
0.1
314
Normal
0.1
968
Normal
0.1
615
Tumor
0.1
1041
Tumor
0.1
816
Normal
0.1
484
Normal
0.1
332
Normal
0.1
912
Normal
0.1
222
Normal
0.1
231
Tumor
0.1
1028
Normal
0.1
455
Tumor
0.1
328
Normal
0.1
383
Tumor
0.1
272
Normal
0.1
568
Normal
0.1
635
Tumor
0.1
958
Normal
0.1
468
Normal
0.1
952
Normal
0.1
714
Normal
0.1
191
Tumor
0.1
916
Normal
0.1
663
Tumor
0.1
672
Normal
0.1
982
Normal
0.1
572
Normal
0.1
914
Normal
0.1
964
Normal
0.1
938
Normal
0.1
546
Normal
0.1
981
Tumor
0.1
412
Normal
0.1
724
Normal
0.1
1016
Normal
0.1
416
Normal
0.1
1042
Normal
0.1
228
Normal
0.1
723
Tumor
0.1
642
Normal
0.1
956
Normal
0.1
451
Tumor
0.1
554
Normal
0.1
698
Normal
0.1
278
Normal
0.1
864
Normal
0.1
786
Normal
0.1
376
Normal
0.1
564
Normal
0.1
268
Normal
0.1
722
Normal
0.0
926
Normal
0.0
861
Tumor
0.0
464
Normal
0.0
1026
Normal
0.0
526
Normal
0.0
984
Normal
0.0
465
Tumor
0.0
925
Tumor
0.0
966
Normal
0.0
488
Normal
0.0
456
Normal
0.0
557
Tumor
0.0
128
Normal
0.0
132
Normal
0.0
474
Normal
0.0
756
Normal
0.0
313
Tumor
0.0
341
Tumor
0.0
424
Normal
0.0
262
Normal
0.0
516
Normal
0.0
862
Normal
0.0
492
Normal
0.0
852
Normal
0.0
697
Tumor
0.0
858
Normal
0.0
284
Normal
0.0
142
Normal
0.0
186
Normal
0.0
388
Normal
0.0
214
Normal
0.0
525
Tumor
0.0
462
Normal
0.0
213
Tumor
0.0
353
Tumor
0.0
874
Normal
0.0
433
Tumor
0.0
362
Normal
0.0
742
Normal
0.0
868
Normal
0.0
483
Tumor
0.0
358
Normal
0.0
148
Normal
0.0
423
Tumor
0.0
138
Normal
0.0
574
Normal
0.0
487
Tumor
0.0
414
Normal
0.0
196
Normal
0.0
422
Normal
0.0
965
Tumor
0.0
342
Normal
0.0
1043
Tumor
0.0
413
Tumor
0.0
815
Tumor
0.0
491
Tumor
0.0
327
Tumor
0.0
224
Normal
0.0
978
Normal
0.0
436
Normal
0.0
472
Normal
-0.1
744
Normal
-0.1
363
Tumor
-0.1
112
Tumor
-0.1
738
Normal
-0.1
172
Normal
-0.1
648
Normal
-0.1
814
Normal
-0.1
415
Tumor
-0.1
884
Normal
-0.1
563
Tumor
-0.1
136
Normal
-0.1
967
Tumor
-0.1
212
Normal
-0.1
498
Normal
-0.1
227
Tumor
-0.1
351
Tumor
-0.1
558
Normal
-0.1
355
Tumor
-0.1
467
Tumor
-0.1
396
Normal
-0.1
528
Normal
-0.1
524
Normal
-0.1
286
Normal
-0.1
446
Normal
-0.1
146
Normal
-0.1
368
Normal
-0.1
851
Tumor
-0.1
298
Normal
-0.1
185
Tumor
-0.1
218
Normal
-0.1
394
Normal
-0.1
482
Normal
-0.1
664
Normal
-0.1
427
Tumor
-0.1
111
Normal
-0.1
921
Tumor
-0.1
312
Normal
-0.1
513
Tumor
-0.1
518
Normal
-0.1
145
Tumor
-0.1
537
Tumor
-0.1
662
Normal
-0.2
478
Normal
-0.2
471
Tumor
-0.2
114
Normal
-0.2
217
Tumor
-0.2
195
Tumor
-0.2
1045
Tumor
-0.2
352
Normal
-0.2
366
Normal
-0.2
162
Normal
-0.2
536
Normal
-0.2
135
Tumor
-0.2
823
Tumor
-0.2
573
Tumor
-0.2
187
Tumor
-0.2
384
Normal
-0.2
917
Tumor
-0.2
124
Normal
-0.2
223
Tumor
-0.2
545
Tumor
-0.2
728
Normal
-0.2
461
Tumor
-0.2
477
Tumor
-0.2
192
Normal
-0.3
432
Normal
-0.3
428
Normal
-0.3
188
Normal
-0.3
387
Tumor
-0.3
365
Tumor
-0.3
443
Tumor
-0.3
386
Normal
-0.3
737
Tumor
-0.3
161
Tumor
-0.3
1015
Tumor
-0.3
447
Tumor
-0.3
126
Normal
-0.3
221
Tumor
-0.3
943
Tumor
-0.3
125
Tumor
-0.3
444
Normal
-0.3
344
Normal
-0.3
666
Normal
-0.3
535
Tumor
-0.3
865
Tumor
-0.3
267
Tumor
-0.3
343
Tumor
-0.4
375
Tumor
-0.4
881
Tumor
-0.4
137
Tumor
-0.4
463
Tumor
-0.4
385
Tumor
-0.4
553
Tumor
-0.4
277
Tumor
-0.4
817
Tumor
-0.4
743
Tumor
-0.4
434
Normal
-0.4
883
Tumor
-0.4
271
Tumor
-0.4
1031
Tumor
-0.4
297
Tumor
-0.4
421
Tumor
-0.4
951
Tumor
-0.4
123
Tumor
-0.5
937
Tumor
-0.5
311
Tumor
-0.5
141
Tumor
-0.5
567
Tumor
-0.5
331
Tumor
-0.6
391
Tumor
-0.6
983
Tumor
-0.6
617
Tumor
-0.6
877
Tumor
-0.7
283
Tumor
-0.7
671
Tumor
-0.7
641
Tumor
-0.7
211
Tumor
-0.7
1025
Tumor
-0.7
113
Tumor
-0.7
661
Tumor
-0.7
367
Tumor
-0.8
395
Tumor
-0.8
285
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
