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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGRMC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
219.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
935.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
923.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
830.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
779.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
685.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
664.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
651.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
645.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
627.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
609.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
601.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
594.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
556.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
548.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
538.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
524.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
499.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
493.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
490.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
483.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
481.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
477.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
468.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
445.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
438.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
437.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
432.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
429.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
429.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
428.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
423.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
421.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
418.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
417.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
409.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
406.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
406.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
405.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
403.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
400.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
398.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
397.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
391.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
388.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
387.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
387.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
384.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
381.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
371.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
370.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
369.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
368.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
367.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
365.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
363.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
358.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
357.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
353.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
352.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
350.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
349.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
349.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
343.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
342.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
338.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
336.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
336.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
330.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
329.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
328.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
327.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
326.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
316.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
315.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
308.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
308.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
306.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
304.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
304.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
303.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
295.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
292.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
290.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
290.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
289.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
287.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
287.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
286.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
286.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
284.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
282.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
281.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
279.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
274.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
273.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
272.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
271.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
270.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
270.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
269.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
269.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
267.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
267.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
267.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
266.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
266.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
262.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
260.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
259.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
257.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
257.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
256.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
256.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
256.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
256.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
256.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
255.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
254.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
254.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
251.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
250.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
249.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
248.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
245.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
244.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
244.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
241.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
240.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
239.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
239.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
239.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
237.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
237.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
236.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
233.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
232.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
231.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
227.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
227.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
227.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
225.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
221.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
218.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
217.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
215.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
215.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
214.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
213.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
213.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
210.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
208.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
207.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
207.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
206.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
205.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
205.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
204.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
202.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
201.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
199.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
197.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
197.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
197.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
195.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
195.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
193.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
192.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
191.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
190.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
190.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
190.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
187.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
186.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
186.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
185.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
185.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
185.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
184.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
182.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
182.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
182.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
180.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
180.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
180.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
180.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
179.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
178.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
178.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
178.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
175.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
175.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
173.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
173.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
172.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
171.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
171.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
170.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
169.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
169.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
167.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
165.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
165.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
164.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
164.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
164.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
161.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
157.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
157.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
157.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
156.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
156.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
155.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
154.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
153.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
152.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
151.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
151.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
150.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
150.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
149.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
147.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
146.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
146.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
146.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
146.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
146.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
145.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
145.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
144.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
144.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
143.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
143.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
143.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
141.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
141.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
140.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
139.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
139.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
138.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
138.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
137.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
137.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
137.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
136.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
136.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
135.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
135.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
133.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
130.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
130.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
130.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
129.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
129.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
128.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
127.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
127.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
127.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
126.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
126.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
126.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
126.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
125.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
124.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
124.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
123.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
123.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
121.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
121.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
120.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
120.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
120.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
119.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
119.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
119.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
118.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
116.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
116.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
115.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
114.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
113.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
112.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
112.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
109.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
109.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
109.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
107.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
107.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
105.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
104.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
103.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
103.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
102.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
102.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
100.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
100.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
98.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
98.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
97.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
96.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
95.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
95.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
94.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
94.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
93.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
93.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
92.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
92.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
92.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
90.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
90.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
90.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
89.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
88.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
88.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
86.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
85.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
85.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
84.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
81.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
80.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
79.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
77.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
77.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
76.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
73.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
73.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
72.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
72.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
69.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
67.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
65.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
65.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
65.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
64.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
62.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
61.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
60.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
58.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
54.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
51.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
51.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
51.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
49.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
48.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
42.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
42.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
40.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
27.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGRMC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
221.5
Number of samples
231
Samples
Sample
Description
TPM
DO45099
0 years, male, NA, stage:3, alive, 1590 days
788.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
770.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
749.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
691.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
688.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
670.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
635.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
592.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
577.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
570.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
564.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
544.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
491.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
482.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
479.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
449.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
442.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
441.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
439.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
432.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
428.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
425.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
417.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
413.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
408.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
389.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
388.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
381.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
380.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
374.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
373.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
368.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
360.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
354.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
353.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
345.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
343.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
342.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
336.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
336.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
335.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
334.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
331.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
331.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
330.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
327.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
327.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
327.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
324.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
323.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
323.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
314.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
313.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
306.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
304.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
297.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
297.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
297.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
295.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
295.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
283.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
283.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
282.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
281.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
281.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
281.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
280.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
276.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
276.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
275.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
274.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
274.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
272.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
265.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
264.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
262.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
257.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
255.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
253.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
249.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
249.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
245.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
244.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
241.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
239.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
239.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
237.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
237.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
235.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
233.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
229.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
228.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
228.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
224.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
219.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
219.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
219.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
218.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
217.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
217.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
217.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
216.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
216.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
216.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
215.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
215.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
212.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
211.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
210.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
205.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
204.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
201.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
192.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
191.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
191.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
190.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
188.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
184.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
182.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
180.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
178.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
178.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
178.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
178.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
177.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
177.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
176.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
173.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
173.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
171.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
169.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
169.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
154.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
154.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
153.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
153.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
151.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
147.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
145.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
142.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
141.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
139.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
139.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
138.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
136.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
136.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
135.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
135.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
135.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
133.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
132.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
132.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
130.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
128.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
126.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
126.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
124.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
123.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
121.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
120.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
115.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
115.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
114.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
114.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
114.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
113.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
113.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
111.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
111.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
111.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
109.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
109.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
108.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
107.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
107.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
105.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
105.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
103.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
101.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
101.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
100.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
99.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
97.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
97.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
95.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
95.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
94.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
94.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
91.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
89.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
87.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
86.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
85.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
85.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
84.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
84.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
84.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
80.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
79.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
78.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
76.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
76.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
75.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
71.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
68.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
67.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
67.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
66.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
64.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
63.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
61.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
61.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
59.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
59.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
58.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
58.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
58.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
56.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
55.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
53.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
52.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
48.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
48.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
45.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
41.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
40.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
857
Tumor
1.6
261
Tumor
1.3
1027
Tumor
1.3
481
Tumor
1.2
445
Tumor
1.1
863
Tumor
1.0
647
Tumor
1.0
527
Tumor
0.9
695
Tumor
0.9
1013
Tumor
0.9
616
Normal
0.8
433
Tumor
0.8
435
Tumor
0.8
411
Tumor
0.8
698
Normal
0.8
342
Normal
0.7
723
Tumor
0.7
955
Tumor
0.7
571
Tumor
0.7
954
Normal
0.7
341
Tumor
0.7
627
Tumor
0.7
298
Normal
0.7
1014
Normal
0.6
426
Normal
0.6
1022
Normal
0.6
745
Tumor
0.6
484
Normal
0.6
1032
Normal
0.6
744
Normal
0.6
714
Normal
0.6
727
Tumor
0.6
882
Normal
0.6
648
Normal
0.5
862
Normal
0.5
1045
Tumor
0.5
534
Normal
0.5
878
Normal
0.5
922
Normal
0.5
866
Normal
0.5
755
Tumor
0.5
785
Tumor
0.5
466
Normal
0.5
488
Normal
0.5
1043
Tumor
0.5
721
Tumor
0.5
1046
Normal
0.5
728
Normal
0.5
314
Normal
0.5
172
Normal
0.5
746
Normal
0.5
376
Normal
0.5
132
Normal
0.5
423
Tumor
0.5
977
Tumor
0.5
128
Normal
0.4
112
Tumor
0.4
742
Normal
0.4
618
Normal
0.4
968
Normal
0.4
938
Normal
0.4
1028
Normal
0.4
412
Normal
0.4
873
Tumor
0.4
436
Normal
0.4
918
Normal
0.4
636
Normal
0.4
738
Normal
0.4
926
Normal
0.4
1044
Normal
0.4
356
Normal
0.4
944
Normal
0.4
422
Normal
0.4
722
Normal
0.4
924
Normal
0.4
615
Tumor
0.4
818
Normal
0.4
554
Normal
0.4
526
Normal
0.4
642
Normal
0.4
964
Normal
0.4
114
Normal
0.4
546
Normal
0.4
196
Normal
0.4
716
Normal
0.4
432
Normal
0.4
431
Tumor
0.4
482
Normal
0.4
976
Normal
0.4
473
Tumor
0.3
1026
Normal
0.3
388
Normal
0.3
686
Normal
0.3
147
Tumor
0.3
572
Normal
0.3
148
Normal
0.3
568
Normal
0.3
448
Normal
0.3
362
Normal
0.3
514
Normal
0.3
778
Normal
0.3
171
Tumor
0.3
358
Normal
0.3
228
Normal
0.3
816
Normal
0.3
696
Normal
0.3
258
Normal
0.3
384
Normal
0.3
332
Normal
0.3
212
Normal
0.3
864
Normal
0.3
162
Normal
0.3
111
Normal
0.3
956
Normal
0.3
824
Normal
0.3
424
Normal
0.3
516
Normal
0.3
414
Normal
0.3
354
Normal
0.3
462
Normal
0.3
392
Normal
0.3
756
Normal
0.3
952
Normal
0.3
468
Normal
0.3
672
Normal
0.3
868
Normal
0.3
357
Tumor
0.3
464
Normal
0.3
966
Normal
0.3
741
Tumor
0.3
786
Normal
0.3
446
Normal
0.3
494
Normal
0.3
515
Tumor
0.3
1042
Normal
0.3
478
Normal
0.2
328
Normal
0.2
394
Normal
0.2
214
Normal
0.2
452
Normal
0.2
137
Tumor
0.2
874
Normal
0.2
472
Normal
0.2
127
Tumor
0.2
666
Normal
0.2
284
Normal
0.2
232
Normal
0.2
777
Tumor
0.2
186
Normal
0.2
982
Normal
0.2
528
Normal
0.2
456
Normal
0.2
664
Normal
0.2
1016
Normal
0.2
278
Normal
0.2
852
Normal
0.2
662
Normal
0.2
564
Normal
0.2
916
Normal
0.2
161
Tumor
0.2
218
Normal
0.2
518
Normal
0.2
498
Normal
0.2
628
Normal
0.2
858
Normal
0.2
884
Normal
0.2
142
Normal
0.2
344
Normal
0.2
474
Normal
0.2
492
Normal
0.2
958
Normal
0.1
364
Normal
0.1
222
Normal
0.1
262
Normal
0.1
912
Normal
0.1
352
Normal
0.1
415
Tumor
0.1
268
Normal
0.1
558
Normal
0.1
963
Tumor
0.1
327
Tumor
0.1
483
Tumor
0.1
366
Normal
0.1
368
Normal
0.1
914
Normal
0.1
635
Tumor
0.1
867
Tumor
0.1
272
Normal
0.1
444
Normal
0.1
538
Normal
0.1
428
Normal
0.1
416
Normal
0.1
984
Normal
0.1
138
Normal
0.0
685
Tumor
0.0
257
Tumor
0.0
136
Normal
0.0
524
Normal
0.0
978
Normal
0.0
915
Tumor
0.0
477
Tumor
0.0
396
Normal
0.0
312
Normal
0.0
1041
Tumor
0.0
434
Normal
0.0
523
Tumor
0.0
286
Normal
0.0
617
Tumor
0.0
813
Tumor
0.0
277
Tumor
0.0
465
Tumor
0.0
231
Tumor
0.0
126
Normal
0.0
353
Tumor
0.0
146
Normal
0.0
224
Normal
0.0
421
Tumor
-0.1
386
Normal
-0.1
188
Normal
-0.1
361
Tumor
-0.1
574
Normal
-0.1
124
Normal
-0.1
113
Tumor
-0.1
185
Tumor
-0.1
911
Tumor
-0.1
393
Tumor
-0.1
861
Tumor
-0.1
493
Tumor
-0.1
313
Tumor
-0.1
921
Tumor
-0.1
713
Tumor
-0.2
715
Tumor
-0.2
187
Tumor
-0.2
355
Tumor
-0.2
443
Tumor
-0.2
553
Tumor
-0.2
536
Normal
-0.2
981
Tumor
-0.2
814
Normal
-0.2
365
Tumor
-0.2
195
Tumor
-0.2
533
Tumor
-0.2
913
Tumor
-0.2
663
Tumor
-0.3
513
Tumor
-0.3
487
Tumor
-0.3
737
Tumor
-0.3
491
Tumor
-0.3
557
Tumor
-0.3
451
Tumor
-0.3
563
Tumor
-0.3
463
Tumor
-0.3
953
Tumor
-0.3
1021
Tumor
-0.3
363
Tumor
-0.3
141
Tumor
-0.3
192
Normal
-0.4
937
Tumor
-0.4
497
Tumor
-0.4
883
Tumor
-0.4
641
Tumor
-0.4
217
Tumor
-0.4
851
Tumor
-0.4
461
Tumor
-0.4
923
Tumor
-0.4
823
Tumor
-0.4
383
Tumor
-0.4
125
Tumor
-0.5
697
Tumor
-0.5
145
Tumor
-0.5
375
Tumor
-0.5
267
Tumor
-0.5
471
Tumor
-0.5
455
Tumor
-0.5
351
Tumor
-0.5
191
Tumor
-0.6
865
Tumor
-0.6
227
Tumor
-0.6
297
Tumor
-0.6
1025
Tumor
-0.6
925
Tumor
-0.6
881
Tumor
-0.6
447
Tumor
-0.6
123
Tumor
-0.7
943
Tumor
-0.7
1015
Tumor
-0.7
213
Tumor
-0.7
665
Tumor
-0.7
271
Tumor
-0.7
387
Tumor
-0.7
917
Tumor
-0.8
467
Tumor
-0.8
343
Tumor
-0.8
517
Tumor
-0.8
391
Tumor
-0.9
877
Tumor
-0.9
951
Tumor
-0.9
283
Tumor
-0.9
1031
Tumor
-0.9
425
Tumor
-0.9
567
Tumor
-0.9
525
Tumor
-1.0
537
Tumor
-1.0
131
Tumor
-1.0
983
Tumor
-1.0
724
Normal
-1.0
815
Tumor
-1.0
957
Tumor
-1.0
975
Tumor
-1.0
967
Tumor
-1.1
221
Tumor
-1.1
367
Tumor
-1.1
671
Tumor
-1.1
965
Tumor
-1.1
427
Tumor
-1.1
135
Tumor
-1.2
413
Tumor
-1.2
285
Tumor
-1.2
311
Tumor
-1.3
545
Tumor
-1.3
573
Tumor
-1.3
331
Tumor
-1.3
817
Tumor
-1.4
743
Tumor
-1.4
223
Tumor
-1.5
661
Tumor
-1.5
535
Tumor
-1.5
395
Tumor
-1.6
211
Tumor
-1.6
385
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.