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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
179.6
nTPM
FANTOM5:
234.7
Scaled Tags Per Million
Pig:
198.9
nTPM
Allen mouse:
7.3
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
179.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 85.4
2188
Female, age 91, both hemispheres
107.7
2301
Female, age 85, both hemispheres
99.7
2090
Male, age 80, both hemispheres
81.4
1984
Male, age 76, both hemispheres
52.8
Dorsal cochlear nucleus nTPM: 83.2
2187
Female, age 91, both hemispheres
115.0
2058
Male, age 76, both hemispheres
86.5
2802
Male, age 74, right hemisphere
75.0
2370
Male, age 61, both hemispheres
71.2
2378
Male, age 80, both hemispheres
68.4
Dorsal tegmental nucleus nTPM: 88.2
2326
Male, age 74, both hemispheres
100.3
2083
Male, age 80, both hemispheres
99.6
1936
Male, age 76, left hemisphere
80.8
2358
Male, age 61, both hemispheres
72.0
Dorsolateral tegmental area nTPM: 96.4
2751
Female, age 85, both hemispheres
135.6
2654
Male, age 80, both hemispheres
97.3
2141
Male, age 76, both hemispheres
94.9
2360
Male, age 74, both hemispheres
88.6
2337
Male, age 61, both hemispheres
65.6
Kolliker-Fuse nucleus nTPM: 82.4
2793
Female, age 91, left hemisphere
99.6
2163
Male, age 80, both hemispheres
73.8
2315
Male, age 76, right hemisphere
73.8
Lateral lemniscal nuclei nTPM: 101.7
2453
Male, age 74, right hemisphere
111.8
2746
Female, age 85, left hemisphere
103.5
2036
Male, age 80, both hemispheres
102.7
2169
Male, age 76, both hemispheres
98.1
2320
Female, age 91, left hemisphere
92.4
Lateral parabrachial nucleus nTPM: 91.8
2790
Male, age 61, both hemispheres
97.4
2013
Male, age 80, both hemispheres
93.6
2139
Female, age 85, right hemisphere
91.8
2792
Male, age 76, both hemispheres
84.4
Lateral vestibular nucleus nTPM: 73.5
2311
Male, age 80, both hemispheres
82.5
2184
Male, age 76, both hemispheres
64.6
Locus coeruleus nTPM: 179.6
2014
Male, age 55, unknown
232.3
1980
Male, age 76, both hemispheres
195.9
2123
Female, age 91, both hemispheres
195.1
2720
Male, age 74, both hemispheres
182.2
2162
Male, age 80, both hemispheres
152.6
2317
Female, age 72, unknown
151.1
2788
Male, age 74, unknown
147.8
Medial parabrachial nucleus nTPM: 102.2
2170
Female, age 91, both hemispheres
134.1
2463
Female, age 85, right hemisphere
106.3
2854
Male, age 80, both hemispheres
94.4
2786
Male, age 76, both hemispheres
88.2
2156
Male, age 61, both hemispheres
87.8
Medial periolivary nuclei nTPM: 103.9
2791
Male, age 74, right hemisphere
136.3
2063
Male, age 76, both hemispheres
114.1
2171
Female, age 85, both hemispheres
106.8
2081
Male, age 80, both hemispheres
82.2
2458
Female, age 91, both hemispheres
80.3
Motor facial nucleus nTPM: 102.3
2365
Male, age 74, right hemisphere
140.9
2062
Male, age 76, both hemispheres
114.8
2126
Male, age 61, both hemispheres
99.9
2697
Female, age 85, both hemispheres
92.4
2327
Male, age 80, both hemispheres
86.4
2795
Female, age 91, both hemispheres
79.5
Motor trigeminal nucleus nTPM: 92.4
2560
Male, age 74, both hemispheres
111.2
2079
Male, age 80, both hemispheres
92.2
2335
Male, age 61, both hemispheres
91.4
2309
Male, age 76, both hemispheres
86.2
2321
Female, age 91, both hemispheres
80.8
Nuclei of the trapezoid body nTPM: 107.2
2159
Male, age 61, both hemispheres
139.0
1983
Male, age 76, both hemispheres
121.3
2735
Female, age 85, both hemispheres
108.8
2166
Male, age 80, both hemispheres
84.7
2368
Female, age 91, both hemispheres
82.2
Nucleus raphe magnus nTPM: 114.6
2160
Male, age 61, both hemispheres
176.1
2455
Male, age 74, both hemispheres
139.4
2172
Female, age 85, both hemispheres
103.2
2328
Male, age 80, both hemispheres
91.1
2051
Male, age 76, both hemispheres
90.4
2459
Female, age 91, both hemispheres
87.3
Paramedian reticular nucleus nTPM: 128.9
2313
Male, age 61, both hemispheres
167.9
2057
Male, age 80, both hemispheres
127.5
2050
Female, age 85, both hemispheres
123.8
2052
Male, age 76, both hemispheres
96.3
Pedunculopontine tegmental nucleus nTPM: 109.9
2334
Male, age 80, both hemispheres
132.0
1921
Female, age 85, both hemispheres
115.7
2338
Male, age 61, both hemispheres
82.1
Pontine nuclei nTPM: 123.6
2727
Male, age 61, right hemisphere
170.8
2454
Male, age 74, left hemisphere
169.7
2109
Female, age 72, unknown
140.1
1863
Male, age 55, unknown
118.8
2319
Female, age 91, both hemispheres
107.9
2787
Female, age 85, both hemispheres
106.1
1968
Male, age 76, left hemisphere
105.1
2115
Male, age 80, left hemisphere
69.9
Pontine raphe nucleus nTPM: 111.6
2853
Male, age 76, midline
112.3
2122
Female, age 85, midline
110.9
Posteroventral cochlear nucleus nTPM: 93.2
2752
Female, age 85, both hemispheres
111.2
2135
Female, age 91, both hemispheres
108.2
2070
Male, age 76, both hemispheres
101.5
2341
Male, age 80, both hemispheres
78.3
2371
Male, age 61, both hemispheres
66.7
Principal sensory trigeminal nucleus nTPM: 102.9
2158
Male, age 61, both hemispheres
140.4
2367
Female, age 91, left hemisphere
106.1
2008
Male, age 80, left hemisphere
104.7
2324
Male, age 76, both hemispheres
60.6
Reticular pontine nucleus, caudal nTPM: 100.0
2559
Male, age 74, both hemispheres
128.0
2092
Male, age 76, both hemispheres
98.0
2457
Female, age 91, both hemispheres
90.7
2332
Male, age 80, right hemisphere
83.3
Reticular pontine nucleus, oral nTPM: 109.8
2361
Male, age 74, both hemispheres
133.4
2012
Female, age 85, both hemispheres
120.3
1939
Male, age 80, both hemispheres
104.5
2167
Male, age 76, both hemispheres
95.4
2366
Female, age 91, both hemispheres
95.4
Reticulotegmental nucleus nTPM: 94.1
2325
Male, age 76, both hemispheres
101.7
2452
Male, age 74, both hemispheres
100.2
2322
Female, age 91, both hemispheres
89.5
2333
Male, age 80, both hemispheres
85.1
Spinal trigeminal nucleus, oral nTPM: 80.5
1978
Male, age 76, both hemispheres
87.7
2737
Female, age 85, both hemispheres
84.2
2164
Male, age 80, both hemispheres
69.5
Subcoeruleus area nTPM: 108.3
2369
Female, age 85, left hemisphere
135.1
2323
Female, age 91, left hemisphere
125.8
1958
Male, age 80, both hemispheres
109.1
2451
Male, age 74, both hemispheres
86.9
2089
Male, age 76, left hemisphere
84.4
Superior olive nTPM: 107.8
2364
Male, age 74, right hemisphere
150.9
1875
Female, age 85, both hemispheres
123.2
2020
Male, age 76, both hemispheres
103.7
2329
Male, age 80, right hemisphere
85.0
2561
Female, age 91, both hemispheres
76.3
Ventral periolivary nuclei nTPM: 95.2
2023
Male, age 76, both hemispheres
114.7
2165
Male, age 80, both hemispheres
105.4
2130
Female, age 85, both hemispheres
90.0
2794
Female, age 91, left hemisphere
70.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 102.0
2449
Male, age 74, both hemispheres
127.6
2359
Male, age 61, both hemispheres
122.6
1959
Male, age 76, both hemispheres
98.7
2840
Female, age 85, both hemispheres
97.7
2161
Male, age 80, both hemispheres
85.0
2456
Female, age 91, both hemispheres
80.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
198.9
Pig sample
Sample description
nTPM
Pons nTPM: 199.0
Samples: 4
Max nTPM: 244.0
Min nTPM: 141.4
Sample A
Female
199.9
Sample B
Female
210.5
Sample C
Male
244.0
Sample D
Male
141.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
