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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMD10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
158.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
97.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
85.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
71.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
68.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
54.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
52.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
49.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
48.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
48.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
46.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
46.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
46.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
45.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
45.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
45.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
44.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
42.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
41.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
39.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
39.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
39.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
39.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
35.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMD10 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
67.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
65.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
57.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
47.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
42.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
41.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
36.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
1.1
171
Tumor
1.0
1013
Tumor
1.0
231
Tumor
0.9
745
Tumor
0.8
663
Tumor
0.8
965
Tumor
0.8
481
Tumor
0.8
112
Tumor
0.8
497
Tumor
0.7
977
Tumor
0.7
123
Tumor
0.7
147
Tumor
0.7
313
Tumor
0.6
724
Normal
0.6
857
Tumor
0.6
393
Tumor
0.5
647
Tumor
0.5
685
Tumor
0.5
777
Tumor
0.5
433
Tumor
0.4
351
Tumor
0.4
665
Tumor
0.4
627
Tumor
0.4
913
Tumor
0.4
125
Tumor
0.4
285
Tumor
0.4
695
Tumor
0.4
445
Tumor
0.4
567
Tumor
0.4
411
Tumor
0.4
487
Tumor
0.3
983
Tumor
0.3
1027
Tumor
0.3
865
Tumor
0.3
473
Tumor
0.3
435
Tumor
0.3
277
Tumor
0.3
1015
Tumor
0.3
131
Tumor
0.3
523
Tumor
0.3
813
Tumor
0.3
921
Tumor
0.3
211
Tumor
0.3
617
Tumor
0.3
261
Tumor
0.2
715
Tumor
0.2
463
Tumor
0.2
737
Tumor
0.2
815
Tumor
0.2
741
Tumor
0.2
851
Tumor
0.2
1021
Tumor
0.2
431
Tumor
0.2
943
Tumor
0.2
341
Tumor
0.2
283
Tumor
0.2
425
Tumor
0.2
491
Tumor
0.2
545
Tumor
0.2
327
Tumor
0.2
873
Tumor
0.2
785
Tumor
0.2
824
Normal
0.1
557
Tumor
0.1
911
Tumor
0.1
957
Tumor
0.1
1043
Tumor
0.1
363
Tumor
0.1
861
Tumor
0.1
343
Tumor
0.1
951
Tumor
0.1
515
Tumor
0.1
518
Normal
0.1
1042
Normal
0.1
738
Normal
0.1
391
Tumor
0.1
186
Normal
0.1
516
Normal
0.1
877
Tumor
0.1
571
Tumor
0.1
697
Tumor
0.1
527
Tumor
0.1
436
Normal
0.1
257
Tumor
0.1
924
Normal
0.1
113
Tumor
0.1
918
Normal
0.1
192
Normal
0.1
514
Normal
0.1
312
Normal
0.1
161
Tumor
0.1
723
Tumor
0.0
671
Tumor
0.0
727
Tumor
0.0
926
Normal
0.0
513
Tumor
0.0
443
Tumor
0.0
818
Normal
0.0
482
Normal
0.0
517
Tumor
0.0
424
Normal
0.0
814
Normal
0.0
271
Tumor
0.0
1031
Tumor
0.0
917
Tumor
0.0
461
Tumor
0.0
746
Normal
0.0
472
Normal
0.0
416
Normal
0.0
866
Normal
0.0
221
Tumor
0.0
223
Tumor
0.0
728
Normal
0.0
742
Normal
0.0
428
Normal
0.0
267
Tumor
0.0
944
Normal
0.0
884
Normal
0.0
1016
Normal
0.0
385
Tumor
0.0
188
Normal
0.0
661
Tumor
0.0
387
Tumor
0.0
111
Normal
0.0
451
Tumor
0.0
955
Tumor
0.0
148
Normal
0.0
422
Normal
0.0
162
Normal
0.0
415
Tumor
0.0
852
Normal
0.0
356
Normal
0.0
467
Tumor
0.0
1046
Normal
0.0
328
Normal
0.0
367
Tumor
0.0
298
Normal
0.0
464
Normal
0.0
882
Normal
0.0
456
Normal
0.0
146
Normal
0.0
648
Normal
0.0
573
Tumor
0.0
952
Normal
0.0
664
Normal
0.0
414
Normal
0.0
432
Normal
0.0
881
Tumor
0.0
698
Normal
0.0
135
Tumor
0.0
218
Normal
0.0
525
Tumor
0.0
978
Normal
0.0
127
Tumor
0.0
874
Normal
0.0
1026
Normal
0.0
137
Tumor
0.0
666
Normal
0.0
228
Normal
-0.1
966
Normal
-0.1
958
Normal
-0.1
1025
Tumor
-0.1
862
Normal
-0.1
466
Normal
-0.1
912
Normal
-0.1
721
Tumor
-0.1
956
Normal
-0.1
938
Normal
-0.1
922
Normal
-0.1
462
Normal
-0.1
286
Normal
-0.1
915
Tumor
-0.1
386
Normal
-0.1
212
Normal
-0.1
141
Tumor
-0.1
364
Normal
-0.1
816
Normal
-0.1
455
Tumor
-0.1
426
Normal
-0.1
145
Tumor
-0.1
126
Normal
-0.1
446
Normal
-0.1
546
Normal
-0.1
1022
Normal
-0.1
923
Tumor
-0.1
914
Normal
-0.1
756
Normal
-0.1
262
Normal
-0.1
786
Normal
-0.1
136
Normal
-0.1
365
Tumor
-0.1
981
Tumor
-0.1
713
Tumor
-0.1
615
Tumor
-0.1
968
Normal
-0.1
1044
Normal
-0.1
258
Normal
-0.1
412
Normal
-0.1
196
Normal
-0.1
217
Tumor
-0.1
222
Normal
-0.1
982
Normal
-0.1
916
Normal
-0.1
526
Normal
-0.1
964
Normal
-0.1
138
Normal
-0.1
484
Normal
-0.1
421
Tumor
-0.1
883
Tumor
-0.1
524
Normal
-0.1
1045
Tumor
-0.1
778
Normal
-0.1
716
Normal
-0.1
353
Tumor
-0.1
564
Normal
-0.1
984
Normal
-0.1
868
Normal
-0.1
493
Tumor
-0.1
963
Tumor
-0.1
314
Normal
-0.1
427
Tumor
-0.1
672
Normal
-0.1
817
Tumor
-0.1
696
Normal
-0.1
474
Normal
-0.1
534
Normal
-0.1
358
Normal
-0.1
662
Normal
-0.1
975
Tumor
-0.1
278
Normal
-0.1
568
Normal
-0.1
471
Tumor
-0.1
714
Normal
-0.1
635
Tumor
-0.2
448
Normal
-0.2
925
Tumor
-0.2
554
Normal
-0.2
132
Normal
-0.2
954
Normal
-0.2
858
Normal
-0.2
114
Normal
-0.2
494
Normal
-0.2
185
Tumor
-0.2
483
Tumor
-0.2
478
Normal
-0.2
878
Normal
-0.2
953
Tumor
-0.2
214
Normal
-0.2
361
Tumor
-0.2
272
Normal
-0.2
864
Normal
-0.2
618
Normal
-0.2
492
Normal
-0.2
213
Tumor
-0.2
744
Normal
-0.2
528
Normal
-0.2
1014
Normal
-0.2
354
Normal
-0.2
755
Tumor
-0.2
574
Normal
-0.2
722
Normal
-0.2
434
Normal
-0.2
355
Tumor
-0.2
563
Tumor
-0.2
444
Normal
-0.2
227
Tumor
-0.2
383
Tumor
-0.2
388
Normal
-0.2
477
Tumor
-0.2
468
Normal
-0.2
362
Normal
-0.2
172
Normal
-0.2
558
Normal
-0.2
937
Tumor
-0.2
224
Normal
-0.2
553
Tumor
-0.2
423
Tumor
-0.2
976
Normal
-0.2
232
Normal
-0.2
342
Normal
-0.2
187
Tumor
-0.2
297
Tumor
-0.2
395
Tumor
-0.2
686
Normal
-0.2
537
Tumor
-0.2
867
Tumor
-0.2
284
Normal
-0.2
616
Normal
-0.2
394
Normal
-0.2
967
Tumor
-0.2
195
Tumor
-0.2
642
Normal
-0.2
1028
Normal
-0.2
498
Normal
-0.2
447
Tumor
-0.3
375
Tumor
-0.3
452
Normal
-0.3
311
Tumor
-0.3
413
Tumor
-0.3
628
Normal
-0.3
268
Normal
-0.3
396
Normal
-0.3
384
Normal
-0.3
536
Normal
-0.3
572
Normal
-0.3
1032
Normal
-0.3
142
Normal
-0.3
823
Tumor
-0.3
488
Normal
-0.3
366
Normal
-0.3
332
Normal
-0.3
392
Normal
-0.3
538
Normal
-0.3
128
Normal
-0.3
641
Tumor
-0.3
352
Normal
-0.3
376
Normal
-0.3
191
Tumor
-0.3
533
Tumor
-0.3
331
Tumor
-0.4
1041
Tumor
-0.4
368
Normal
-0.4
535
Tumor
-0.4
465
Tumor
-0.4
344
Normal
-0.4
124
Normal
-0.4
636
Normal
-0.5
743
Tumor
-0.5
357
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
