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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAPA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
107.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
94.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
66.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
65.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
62.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
61.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
59.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
55.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
55.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
53.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
53.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
44.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
42.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
38.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
26.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAPA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
231
Samples
Sample
Description
TPM
DO48751
0 years, male, NA, stage:2, dead, 480 days
60.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
43.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
41.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
40.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
39.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
37.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
1.1
865
Tumor
0.8
525
Tumor
0.8
477
Tumor
0.7
557
Tumor
0.6
1013
Tumor
0.6
553
Tumor
0.6
857
Tumor
0.6
533
Tumor
0.6
697
Tumor
0.5
925
Tumor
0.5
967
Tumor
0.5
517
Tumor
0.4
1021
Tumor
0.4
977
Tumor
0.4
954
Normal
0.4
921
Tumor
0.4
1041
Tumor
0.4
955
Tumor
0.3
915
Tumor
0.3
537
Tumor
0.3
715
Tumor
0.3
135
Tumor
0.3
363
Tumor
0.3
427
Tumor
0.3
421
Tumor
0.3
741
Tumor
0.3
695
Tumor
0.3
445
Tumor
0.3
963
Tumor
0.3
951
Tumor
0.3
161
Tumor
0.3
713
Tumor
0.3
524
Normal
0.3
938
Normal
0.3
123
Tumor
0.2
448
Normal
0.2
882
Normal
0.2
641
Tumor
0.2
488
Normal
0.2
451
Tumor
0.2
471
Tumor
0.2
878
Normal
0.2
534
Normal
0.2
412
Normal
0.2
923
Tumor
0.2
497
Tumor
0.2
984
Normal
0.2
462
Normal
0.2
484
Normal
0.2
1043
Tumor
0.2
518
Normal
0.2
567
Tumor
0.2
538
Normal
0.2
786
Normal
0.2
867
Tumor
0.2
1014
Normal
0.2
866
Normal
0.2
491
Tumor
0.2
546
Normal
0.2
851
Tumor
0.2
982
Normal
0.2
922
Normal
0.2
648
Normal
0.2
861
Tumor
0.2
944
Normal
0.2
284
Normal
0.2
698
Normal
0.2
1028
Normal
0.2
983
Tumor
0.2
685
Tumor
0.2
723
Tumor
0.2
824
Normal
0.2
523
Tumor
0.2
937
Tumor
0.2
956
Normal
0.1
916
Normal
0.1
535
Tumor
0.1
356
Normal
0.1
257
Tumor
0.1
375
Tumor
0.1
526
Normal
0.1
514
Normal
0.1
212
Normal
0.1
636
Normal
0.1
686
Normal
0.1
494
Normal
0.1
478
Normal
0.1
1026
Normal
0.1
966
Normal
0.1
968
Normal
0.1
918
Normal
0.1
286
Normal
0.1
1032
Normal
0.1
727
Tumor
0.1
952
Normal
0.1
472
Normal
0.1
267
Tumor
0.1
452
Normal
0.1
1044
Normal
0.1
746
Normal
0.1
493
Tumor
0.1
482
Normal
0.1
283
Tumor
0.1
883
Tumor
0.1
744
Normal
0.1
912
Normal
0.1
852
Normal
0.1
443
Tumor
0.1
975
Tumor
0.1
978
Normal
0.1
816
Normal
0.1
1027
Tumor
0.1
342
Normal
0.1
528
Normal
0.1
957
Tumor
0.1
742
Normal
0.1
714
Normal
0.1
1046
Normal
0.1
481
Tumor
0.1
228
Normal
0.1
815
Tumor
0.1
474
Normal
0.1
926
Normal
0.1
864
Normal
0.1
778
Normal
0.1
858
Normal
0.1
314
Normal
0.1
616
Normal
0.1
527
Tumor
0.1
1022
Normal
0.1
628
Normal
0.1
862
Normal
0.1
341
Tumor
0.1
422
Normal
0.1
716
Normal
0.1
818
Normal
0.1
415
Tumor
0.1
953
Tumor
0.1
367
Tumor
0.1
728
Normal
0.1
911
Tumor
0.1
411
Tumor
0.1
113
Tumor
0.1
1042
Normal
0.1
868
Normal
0.1
222
Normal
0.1
492
Normal
0.1
1031
Tumor
0.1
516
Normal
0.1
368
Normal
0.1
435
Tumor
0.1
756
Normal
0.1
981
Tumor
0.1
364
Normal
0.1
721
Tumor
0.1
414
Normal
0.0
924
Normal
0.0
328
Normal
0.0
376
Normal
0.0
618
Normal
0.0
884
Normal
0.0
958
Normal
0.0
738
Normal
0.0
554
Normal
0.0
513
Tumor
0.0
466
Normal
0.0
817
Tumor
0.0
498
Normal
0.0
874
Normal
0.0
536
Normal
0.0
148
Normal
0.0
473
Tumor
0.0
224
Normal
0.0
976
Normal
0.0
171
Tumor
0.0
426
Normal
0.0
1016
Normal
0.0
416
Normal
0.0
383
Tumor
0.0
258
Normal
0.0
696
Normal
0.0
914
Normal
0.0
162
Normal
0.0
877
Tumor
0.0
1045
Tumor
0.0
964
Normal
0.0
722
Normal
0.0
231
Tumor
0.0
943
Tumor
0.0
172
Normal
0.0
352
Normal
0.0
131
Tumor
0.0
431
Tumor
0.0
436
Normal
0.0
114
Normal
0.0
464
Normal
0.0
571
Tumor
0.0
361
Tumor
0.0
635
Tumor
0.0
388
Normal
0.0
142
Normal
0.0
132
Normal
0.0
344
Normal
0.0
298
Normal
0.0
413
Tumor
0.0
136
Normal
0.0
515
Tumor
0.0
278
Normal
0.0
191
Tumor
0.0
232
Normal
0.0
483
Tumor
0.0
214
Normal
0.0
446
Normal
0.0
444
Normal
0.0
358
Normal
0.0
564
Normal
0.0
468
Normal
0.0
965
Tumor
0.0
128
Normal
-0.1
396
Normal
-0.1
392
Normal
-0.1
424
Normal
-0.1
572
Normal
-0.1
354
Normal
-0.1
138
Normal
-0.1
355
Tumor
-0.1
785
Tumor
-0.1
196
Normal
-0.1
145
Tumor
-0.1
384
Normal
-0.1
262
Normal
-0.1
662
Normal
-0.1
873
Tumor
-0.1
112
Tumor
-0.1
563
Tumor
-0.1
823
Tumor
-0.1
186
Normal
-0.1
362
Normal
-0.1
664
Normal
-0.1
268
Normal
-0.1
558
Normal
-0.1
111
Normal
-0.1
666
Normal
-0.1
147
Tumor
-0.1
395
Tumor
-0.1
724
Normal
-0.1
642
Normal
-0.1
272
Normal
-0.1
917
Tumor
-0.1
261
Tumor
-0.1
423
Tumor
-0.1
277
Tumor
-0.1
332
Normal
-0.1
627
Tumor
-0.1
188
Normal
-0.1
447
Tumor
-0.1
394
Normal
-0.1
312
Normal
-0.1
568
Normal
-0.1
271
Tumor
-0.1
813
Tumor
-0.1
432
Normal
-0.1
755
Tumor
-0.1
573
Tumor
-0.1
428
Normal
-0.1
615
Tumor
-0.1
456
Normal
-0.1
647
Tumor
-0.1
313
Tumor
-0.1
218
Normal
-0.1
327
Tumor
-0.1
881
Tumor
-0.1
366
Normal
-0.1
285
Tumor
-0.1
574
Normal
-0.1
227
Tumor
-0.1
126
Normal
-0.2
195
Tumor
-0.2
124
Normal
-0.2
814
Normal
-0.2
487
Tumor
-0.2
213
Tumor
-0.2
434
Normal
-0.2
1015
Tumor
-0.2
125
Tumor
-0.2
743
Tumor
-0.2
223
Tumor
-0.2
365
Tumor
-0.2
211
Tumor
-0.2
146
Normal
-0.2
672
Normal
-0.2
913
Tumor
-0.2
455
Tumor
-0.2
386
Normal
-0.2
127
Tumor
-0.2
433
Tumor
-0.2
387
Tumor
-0.2
357
Tumor
-0.2
221
Tumor
-0.3
311
Tumor
-0.3
467
Tumor
-0.3
863
Tumor
-0.3
297
Tumor
-0.3
185
Tumor
-0.3
665
Tumor
-0.3
217
Tumor
-0.3
463
Tumor
-0.3
465
Tumor
-0.3
745
Tumor
-0.3
661
Tumor
-0.3
331
Tumor
-0.3
545
Tumor
-0.3
137
Tumor
-0.3
385
Tumor
-0.3
353
Tumor
-0.3
663
Tumor
-0.3
343
Tumor
-0.3
737
Tumor
-0.3
192
Normal
-0.3
187
Tumor
-0.4
425
Tumor
-0.4
777
Tumor
-0.4
617
Tumor
-0.4
391
Tumor
-0.4
351
Tumor
-0.4
461
Tumor
-0.4
393
Tumor
-0.4
671
Tumor
-0.6
141
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.